genome.fa.s179.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  50  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9771472--9771647	94	1.9	89	83	12	223	53	1	2	42	1.25
9771483--9771648	76	2.2	78	84	12	211	53	1	3	42	1.27
9772487--9772567	21	3.5	21	69	26	56	34	0	1	64	1.02
9772534--9772570	13	3.0	13	88	7	51	27	0	0	72	0.84
9785780--9785817	2	19.5	2	83	5	51	52	0	2	44	1.14
9786904--9786997	43	2.2	43	84	3	118	28	7	5	58	1.47
9787614--9787643	4	7.8	4	92	7	53	76	0	0	23	0.78
9788453--9788500	8	6.0	8	87	0	69	12	2	2	83	0.83
9788708--9789252	44	12.5	44	71	10	291	43	13	14	28	1.83
9788708--9789174	86	5.4	85	75	10	315	42	13	14	29	1.84
9791961--9791985	12	2.1	12	100	0	50	76	0	0	24	0.80
9791972--9792011	20	2.0	21	85	5	55	55	2	0	42	1.13
9792275--9792304	14	2.1	15	93	6	53	40	0	0	60	0.97
9795891--9795928	18	2.1	18	90	0	58	31	0	0	68	0.90
9798082--9798132	17	2.7	19	76	14	52	56	3	0	39	1.18
9800281--9800312	2	16.5	2	93	6	57	50	0	0	50	1.00
9800325--9800376	25	2.0	26	85	14	72	50	1	0	48	1.12
9800281--9800464	77	2.5	71	79	14	180	47	1	0	50	1.15
9800438--9800486	23	2.2	21	86	13	64	30	0	0	69	0.89
9800438--9800486	21	2.2	23	86	13	68	30	0	0	69	0.89
9807756--9808175	221	1.9	221	80	2	486	38	10	14	36	1.81
9812419--9812470	27	2.0	27	85	11	72	42	7	3	46	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9813068--9813111	20	2.2	20	88	8	63	2	25	0	72	0.96
9813719--9813964	131	1.9	132	82	4	318	42	5	19	32	1.74
9817122--9817339	120	1.8	120	83	5	289	28	13	27	30	1.94
9818911--9818961	21	2.5	21	96	3	95	49	0	0	50	1.00
9818946--9818985	16	2.7	14	88	7	53	55	0	0	45	0.99
9818951--9818987	8	4.6	8	86	0	56	56	0	0	43	0.99
9818948--9818995	14	3.3	14	80	11	51	60	0	0	39	0.97
9819863--9819927	30	2.3	29	84	7	80	50	6	0	43	1.27
9821520--9821587	8	8.8	8	74	18	54	66	0	2	30	1.07
9822241--9822275	2	17.5	2	93	0	61	48	0	2	48	1.16
9825575--9825844	134	2.0	134	100	0	540	37	11	9	40	1.75
9825709--9826186	162	2.9	165	90	4	748	37	11	12	38	1.80
9834129--9834172	18	2.4	18	96	0	79	13	40	18	27	1.88
9840500--9840543	2	22.5	2	90	4	72	54	45	0	0	0.99
9840549--9840582	10	3.4	10	92	8	52	50	0	5	44	1.26
9840543--9840576	2	17.0	2	88	11	52	50	0	2	47	1.16
9844134--9844202	22	3.3	22	64	15	65	37	13	8	40	1.75
9844130--9844221	40	2.3	40	100	0	184	34	16	10	38	1.84
9844717--9845266	282	1.9	284	87	3	804	38	13	12	35	1.82
9845437--9845756	121	2.7	121	79	7	328	39	13	13	34	1.83
9849714--9849836	60	2.0	60	93	0	210	11	20	21	47	1.81
9853331--9853373	18	2.4	18	84	11	61	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9858836--9858883	18	2.9	18	76	11	50	29	6	6	58	1.47
9859058--9859101	13	3.4	13	81	12	63	56	0	0	43	0.99
9859037--9859125	23	3.7	23	80	12	81	53	3	2	40	1.30
9859627--9859677	22	2.4	22	83	12	70	62	5	0	31	1.19
9860015--9860052	20	1.9	20	89	10	60	47	7	5	39	1.55
9866632--9866682	22	2.3	23	80	19	63	49	0	0	50	1.00
9869501--9869525	7	3.6	7	100	0	50	28	0	0	72	0.86
9876410--9876434	12	2.1	12	100	0	50	32	28	0	40	1.57
9878244--9878275	2	16.0	2	100	0	64	50	0	0	50	1.00
9881972--9882020	2	24.5	2	100	0	98	48	0	0	51	1.00
9901576--9901789	119	1.8	117	83	6	288	43	7	3	45	1.48
9914310--9914367	18	3.2	18	78	9	73	0	39	1	58	1.08
9914436--9914499	27	2.4	27	89	0	101	4	31	3	60	1.32
9914552--9914594	17	2.5	17	84	3	50	0	32	2	65	1.06
9914543--9914756	90	2.5	81	78	16	241	4	32	4	58	1.38
9914565--9914748	90	2.0	91	87	3	262	5	32	3	58	1.39
9914646--9914679	11	2.8	12	91	8	52	0	29	0	70	0.87
9921700--9921731	16	2.0	16	100	0	64	37	0	25	37	1.56
9929948--9929981	15	2.2	16	89	5	52	64	14	2	17	1.40
9931749--9931780	15	2.1	15	94	0	55	62	9	6	21	1.47
9931740--9931805	28	2.4	27	75	12	71	50	12	7	30	1.67
9931884--9931947	20	3.2	19	75	20	60	50	4	4	40	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9932071--9932110	21	1.9	21	85	10	55	55	15	0	30	1.41
9935891--9935955	9	8.5	8	75	16	50	23	1	1	73	1.00
9935894--9935958	17	3.8	17	76	15	64	21	1	1	75	0.97
9935914--9935959	12	3.9	12	82	2	58	21	0	2	76	0.90
9937074--9937127	9	5.7	9	76	10	54	79	0	3	16	0.87
9937301--9937462	49	3.3	51	82	5	163	46	16	9	27	1.79
9937325--9937567	97	2.5	98	82	7	278	40	19	10	28	1.85
9937325--9937567	48	5.0	48	83	7	249	40	19	10	28	1.85
9949843--9949889	22	2.1	22	84	0	58	68	0	2	29	1.02
9950822--9950874	8	6.6	8	85	10	56	75	0	1	22	0.90
9959382--9959423	11	3.8	11	87	0	66	19	0	30	50	1.48
9959381--9959423	22	2.0	22	95	0	77	20	0	30	48	1.50
9959467--9959603	52	2.6	52	84	2	166	41	5	24	27	1.78
9959743--9959808	34	2.0	32	85	8	89	36	18	30	15	1.91
9963494--9963532	16	2.4	16	82	4	51	48	0	2	48	1.15
9963519--9963609	29	3.2	28	80	9	80	50	1	2	46	1.20
9964597--9964627	16	1.9	16	93	0	53	64	6	9	19	1.45
9967391--9967445	27	2.0	27	100	0	110	14	14	25	45	1.83
9971266--9971305	20	1.9	22	85	10	57	35	0	0	65	0.93
9971321--9971372	22	2.5	22	93	6	90	50	0	0	50	1.00
9976411--9976457	22	2.1	22	84	7	60	44	0	2	53	1.12
9979974--9980046	37	1.9	38	86	8	105	38	0	9	52	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9980137--9980190	28	2.0	27	82	17	67	46	0	1	51	1.11
9980177--9980210	13	2.6	13	90	0	50	50	0	0	50	1.00
9991413--9991448	18	2.0	18	94	0	63	63	0	5	30	1.17
10000395--10000473	16	4.6	16	69	17	59	50	1	2	45	1.23
10006608--10006659	24	2.1	25	82	3	61	38	1	13	46	1.54
10008825--10008876	27	1.9	27	84	0	68	59	0	5	34	1.21
10008832--10008894	21	3.0	22	77	9	69	61	0	3	34	1.12
10008837--10008899	27	2.3	27	81	5	74	61	0	3	34	1.12
10008977--10009065	16	5.1	17	73	17	58	59	1	2	37	1.17
10009595--10009636	17	2.5	17	88	0	57	14	35	28	21	1.92
10016986--10017059	28	2.6	28	93	0	130	39	8	16	36	1.78
10031078--10031108	7	4.4	7	100	0	62	45	16	12	25	1.83
10031063--10031108	21	2.2	21	84	7	58	45	17	8	28	1.78
10031569--10031649	28	2.9	28	83	3	110	34	8	20	35	1.84
10031569--10031647	27	2.9	28	84	3	106	35	8	20	35	1.84
10034732--10034765	16	2.1	16	88	0	50	38	0	17	44	1.49
10034810--10034861	25	2.1	24	85	3	68	26	1	21	50	1.59
10042913--10042987	23	3.3	23	98	1	143	40	12	8	40	1.72
10043501--10043545	19	2.4	19	88	3	65	2	4	8	84	0.84
10043930--10044272	175	2.0	173	87	3	501	47	11	18	22	1.81
10043930--10044316	173	2.2	174	85	5	507	46	12	19	21	1.82
10044161--10044585	206	2.0	208	79	7	445	46	11	20	21	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10044493--10045006	108	4.7	109	85	4	644	47	13	18	20	1.82
10044666--10044938	38	7.4	37	67	12	123	49	12	17	20	1.79
10044493--10045005	220	2.4	216	83	6	640	47	13	18	20	1.82
10047465--10047508	24	2.0	21	86	13	61	59	0	0	40	0.98
10047472--10047535	27	2.3	28	84	10	78	67	1	0	31	1.00
10048988--10049028	14	2.9	14	96	3	73	51	34	0	14	1.43
10055447--10055476	15	2.0	15	100	0	60	40	13	13	33	1.83
10056743--10056819	40	1.9	40	83	0	100	40	15	14	29	1.87
10057082--10057125	22	2.0	22	90	0	70	22	22	25	29	1.99
10057086--10057454	109	3.4	109	90	0	558	22	22	19	35	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77