genome.fa.s179.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  56  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11125476--11125514	19	2.1	18	90	4	60	20	0	7	71	1.10
11125460--11125562	42	2.5	40	75	18	95	25	0	4	69	1.07
11125494--11125539	12	3.8	12	81	13	51	21	0	6	71	1.08
11125501--11125540	14	3.1	13	89	7	55	20	0	7	72	1.08
11127002--11127042	15	2.9	15	85	7	50	21	0	2	75	0.92
11127159--11127191	17	1.9	17	100	0	66	66	0	3	30	1.06
11127414--11127571	29	5.4	29	75	14	121	50	29	0	19	1.53
11127551--11127606	22	2.5	22	88	0	85	51	26	0	21	1.48
11127532--11127622	22	4.1	22	78	5	69	52	23	0	24	1.47
11128790--11128872	3	27.7	3	100	0	166	32	0	0	67	0.91
11129394--11129434	22	2.0	22	85	9	59	36	0	12	51	1.40
11129444--11129491	21	2.3	21	88	0	69	41	8	2	47	1.45
11130708--11130772	14	5.0	12	77	22	53	9	1	12	76	1.07
11130712--11130758	14	3.4	14	82	5	60	8	2	12	76	1.09
11130707--11130770	23	2.8	22	72	9	56	9	1	12	76	1.08
11131194--11131227	12	2.9	12	86	4	52	79	0	0	20	0.73
11133266--11133478	118	1.9	111	85	6	291	25	4	6	62	1.39
11133702--11133726	2	12.5	2	100	0	50	52	0	0	48	1.00
11136396--11136423	2	14.0	2	100	0	56	50	0	0	50	1.00
11138942--11139144	102	2.0	102	88	3	302	31	20	26	22	1.98
11139185--11139211	13	2.1	13	100	0	54	22	33	22	22	1.97
11139053--11139343	145	2.0	145	89	1	440	30	20	23	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11139673--11139736	23	2.7	23	80	11	67	39	1	4	54	1.31
11140135--11140176	15	2.9	14	80	20	50	57	0	2	40	1.12
11140910--11140980	26	2.7	26	80	12	65	50	5	2	40	1.40
11143114--11143164	23	2.2	23	82	10	59	47	3	1	47	1.32
11144216--11144255	20	2.0	21	85	5	55	47	0	2	50	1.14
11150554--11150584	16	1.9	16	100	0	62	38	12	19	29	1.89
11153415--11153487	6	12.0	6	85	8	85	65	5	1	27	1.22
11153446--11153487	3	14.0	3	100	0	84	66	0	0	33	0.92
11153415--11153487	9	8.0	9	85	7	85	65	5	1	27	1.22
11156136--11156202	27	2.3	30	82	12	86	47	2	0	49	1.16
11156644--11156679	18	2.1	18	89	5	56	38	0	0	61	0.96
11156681--11156760	32	2.5	31	76	15	81	36	5	7	51	1.52
11159484--11159528	3	15.0	3	100	0	90	33	0	0	66	0.92
11159971--11160672	102	6.8	102	71	8	458	44	12	20	22	1.86
11160830--11160894	33	1.9	34	84	3	87	46	12	24	16	1.82
11160586--11161051	171	2.7	171	84	6	588	47	11	18	22	1.81
11160999--11161066	34	2.0	34	91	0	109	48	14	22	14	1.80
11160999--11161093	34	2.7	34	81	6	91	46	15	22	15	1.84
11164256--11164309	25	2.2	25	86	6	74	37	5	18	38	1.74
11164318--11164390	32	2.3	32	92	0	128	26	20	24	28	1.99
11164451--11164488	20	1.9	20	88	0	58	39	26	10	23	1.87
11164878--11165279	57	6.8	59	85	7	505	42	8	14	33	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11166743--11166784	9	4.7	9	91	5	59	21	0	9	69	1.17
11166743--11166796	19	2.9	19	83	10	67	24	0	9	66	1.20
11167277--11167349	32	2.3	32	88	2	112	24	19	26	30	1.98
11167409--11167446	20	1.9	20	94	0	67	31	26	18	23	1.97
11167845--11168304	116	3.9	118	93	3	673	43	8	14	33	1.76
11167839--11168304	57	7.9	59	84	8	585	43	8	14	33	1.76
11167842--11168304	59	7.8	59	85	7	618	42	8	14	33	1.76
11178889--11179114	110	2.1	110	92	0	371	36	10	8	44	1.69
11180366--11180410	17	2.6	17	89	3	63	26	0	2	71	0.98
11180416--11180442	3	9.0	3	100	0	54	33	0	0	66	0.92
11180952--11180981	2	15.0	2	100	0	60	0	50	0	50	1.00
11182885--11182926	11	3.8	11	93	0	75	21	0	28	50	1.49
11182884--11182926	22	2.0	22	100	0	86	23	0	27	48	1.51
11182946--11183093	52	2.8	52	80	8	167	45	7	18	28	1.77
11183968--11183998	11	2.8	11	95	0	53	22	0	25	51	1.48
11184024--11184149	52	2.4	53	81	2	139	49	8	15	26	1.73
11184054--11184178	52	2.4	51	77	9	126	43	8	19	28	1.81
11184735--11184836	50	2.1	48	83	7	125	35	7	33	23	1.84
11185110--11185253	52	2.8	52	81	2	155	43	9	20	27	1.82
11187645--11187717	30	2.5	29	77	4	76	20	2	26	50	1.61
11187715--11187748	16	2.1	16	88	0	50	17	0	35	47	1.48
11187769--11187852	15	5.3	15	76	9	78	17	1	30	50	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11187699--11187812	61	1.9	60	85	8	160	20	0	35	44	1.52
11187770--11187852	32	2.6	31	83	9	105	18	1	31	49	1.55
11188111--11188152	3	14.0	3	100	0	84	33	0	0	66	0.92
11189905--11190150	131	1.9	130	89	2	325	27	20	23	27	1.99
11190454--11190499	23	1.9	23	86	8	65	39	2	0	58	1.10
11190454--11190517	23	2.7	23	76	11	58	39	3	1	56	1.25
11193017--11193153	29	4.7	30	73	13	108	40	2	2	54	1.28
11193019--11193154	59	2.3	60	78	15	142	41	3	2	52	1.31
11193551--11193579	13	2.1	14	93	6	51	41	0	0	58	0.98
11205053--11205079	2	13.5	2	100	0	54	48	0	0	51	1.00
11205161--11205206	22	2.1	22	88	8	67	52	0	34	13	1.40
11207424--11207463	21	2.0	21	85	5	55	25	2	5	67	1.23
11208773--11208810	6	6.3	6	100	0	76	68	15	15	0	1.22
11208926--11209488	47	11.6	49	79	6	538	38	21	11	28	1.88
11230004--11230056	20	2.5	20	79	14	54	32	3	1	62	1.24
11230021--11230063	20	2.1	21	87	12	63	32	2	2	62	1.20
11232917--11232950	17	2.0	17	94	0	59	26	0	0	73	0.83
11234181--11234213	8	4.2	8	84	7	50	9	3	0	87	0.63
11234883--11234926	7	6.1	7	84	10	54	4	0	11	84	0.77
11236185--11236277	49	1.9	48	91	2	150	43	8	9	38	1.68
11241397--11241441	2	22.5	2	100	0	90	0	48	0	51	1.00
11247238--11247263	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11247853--11247915	24	2.7	23	75	7	63	46	4	1	47	1.33
11251694--11251718	13	1.9	13	100	0	50	64	0	0	36	0.94
11252697--11252734	18	2.1	18	85	9	51	55	0	10	34	1.34
11252731--11252790	29	2.0	31	87	9	88	61	5	1	31	1.27
11253225--11253286	24	2.7	23	80	9	72	45	3	1	50	1.27
11256765--11257082	119	2.6	118	80	9	322	33	7	8	51	1.59
11257131--11257183	21	2.5	22	87	6	74	73	3	1	20	1.08
11257508--11257566	24	2.4	25	86	8	77	32	3	13	50	1.58
11257923--11257970	21	2.3	21	96	0	87	12	31	33	22	1.91
11258857--11258883	14	1.9	14	100	0	54	66	0	3	29	1.09
11260395--11260438	12	3.5	12	82	17	54	72	0	22	4	1.02
11262432--11262467	17	2.0	19	89	10	58	50	0	5	44	1.25
11266803--11266838	7	5.1	7	100	0	72	13	72	13	0	1.13
11267001--11267250	71	3.5	71	89	4	366	26	24	22	26	2.00
11267001--11267250	69	3.6	69	82	10	310	26	24	22	26	2.00
11267226--11267308	41	2.0	41	90	4	132	14	24	25	36	1.93
11267157--11267606	113	4.0	113	91	5	727	22	24	23	30	1.99
11267341--11267421	39	2.0	43	88	9	125	17	22	24	35	1.95
11267452--11267534	41	2.0	41	95	0	148	15	22	25	36	1.94
11267493--11267627	72	1.9	72	98	0	261	23	25	22	27	2.00
11267652--11267722	2	37.0	2	75	13	60	4	47	4	43	1.42
11272476--11272505	12	2.5	12	94	0	51	23	20	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11273083--11273155	20	3.6	20	76	8	67	35	0	0	64	0.94
11273090--11273152	14	4.5	15	71	16	55	34	0	0	65	0.93
11273814--11273874	25	2.4	25	86	0	86	31	8	37	22	1.84
11274211--11274329	52	2.3	52	86	0	157	47	6	18	27	1.74
11276757--11276800	20	2.3	18	82	17	54	43	2	0	54	1.12
11276825--11276865	15	2.7	15	85	14	57	48	4	0	46	1.23
11277011--11277053	20	2.1	21	86	4	61	60	0	4	34	1.17
11279620--11279663	18	2.4	18	85	7	54	54	0	6	38	1.27
11281054--11281103	13	4.1	12	82	7	57	70	2	24	4	1.15
11281746--11281791	24	2.0	24	91	8	78	36	0	0	63	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77