genome.fa.s179.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  42  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8332000--8332039	12	3.2	12	89	3	53	70	7	7	15	1.33
8332071--8332692	57	10.7	56	85	7	762	34	12	7	45	1.71
8332716--8332893	16	11.4	15	68	20	66	75	4	3	16	1.10
8332734--8332863	17	7.2	18	68	17	56	75	4	3	16	1.10
8332717--8332865	27	5.5	26	71	20	92	75	4	3	16	1.09
8332718--8332801	17	4.6	17	77	14	62	77	2	4	15	1.04
8332809--8332862	8	6.9	8	78	18	51	75	7	0	16	1.01
8332832--8332890	23	2.8	20	77	12	55	77	6	1	13	1.03
8333196--8333240	19	2.4	19	88	0	63	26	20	26	26	1.99
8333296--8333363	31	2.2	31	83	0	82	29	19	19	32	1.96
8333705--8333749	22	2.1	22	83	4	56	66	0	8	24	1.20
8333714--8333828	23	5.0	22	67	19	58	67	1	5	25	1.21
8333775--8333822	14	3.4	13	78	18	51	79	2	2	16	0.93
8333775--8333818	23	1.9	23	90	9	72	79	2	2	15	0.93
8333871--8333905	11	3.1	12	88	12	56	80	0	0	20	0.72
8333873--8333907	6	5.8	6	90	10	54	80	0	0	20	0.72
8334071--8334125	9	5.7	9	81	14	65	1	0	12	85	0.68
8334172--8334587	39	10.3	41	91	4	586	37	21	18	22	1.94
8334135--8334587	83	5.6	82	89	5	610	37	22	17	22	1.94
8334172--8334587	119	3.4	120	94	3	653	37	21	18	22	1.94
8335798--8335865	16	4.4	15	78	12	75	4	7	1	86	0.74
8335805--8335885	23	3.5	24	80	11	69	6	11	1	81	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8335798--8335865	1	68.0	1	73	0	55	4	7	1	86	0.74
8339679--8339704	13	2.0	13	100	0	52	76	7	0	15	0.99
8339750--8340315	57	9.7	56	84	8	704	34	13	8	44	1.73
8339750--8340315	177	3.2	174	90	5	867	34	13	8	44	1.73
8340349--8340383	10	3.5	10	85	14	54	77	0	0	22	0.78
8340343--8340382	20	2.0	21	95	5	73	75	0	2	22	0.93
8340342--8340487	27	5.4	26	68	20	79	75	4	3	17	1.10
8340364--8340424	17	3.5	17	80	6	61	77	3	4	14	1.07
8341419--8341466	14	3.4	13	78	18	51	79	2	2	16	0.93
8341419--8341462	23	1.9	23	90	9	72	79	2	2	15	0.93
8341513--8341542	6	4.8	6	95	4	51	80	0	0	20	0.72
8342609--8342690	11	7.4	11	78	15	73	14	4	1	79	0.96
8342608--8342690	6	13.7	6	75	15	73	14	4	1	79	0.95
8342610--8342683	28	2.6	28	83	12	98	14	4	1	79	0.94
8342616--8342690	17	4.5	16	78	15	73	14	4	1	80	0.93
8342620--8342690	34	2.1	33	82	10	81	14	4	1	80	0.93
8342707--8343413	60	11.8	59	80	11	723	45	7	12	33	1.70
8342716--8343413	120	5.8	119	91	4	1011	45	7	12	33	1.70
8343450--8343478	6	4.8	6	100	0	58	17	0	13	68	1.20
8351784--8351851	9	7.7	9	81	3	84	77	0	11	10	0.98
8352912--8353190	34	7.8	34	69	27	131	23	14	23	38	1.91
8352888--8353215	37	9.0	37	71	22	198	24	14	22	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8355837--8355904	27	2.5	27	82	0	91	77	0	11	10	0.98
8355837--8355904	19	3.8	18	79	13	77	77	0	11	10	0.98
8355855--8355907	8	6.2	8	83	12	70	71	0	15	13	1.14
8356906--8357408	41	12.0	41	91	2	774	23	16	23	36	1.94
8357419--8357493	1	75.0	1	75	0	69	88	9	1	1	0.65
8357420--8357493	9	7.9	9	82	11	87	87	9	1	1	0.65
8357430--8357493	25	2.7	24	81	15	87	87	10	1	0	0.61
8357677--8357827	23	7.0	21	70	23	59	27	2	5	64	1.29
8357689--8357827	16	9.1	16	68	17	66	28	2	5	63	1.30
8357686--8357827	3	47.0	3	67	24	50	28	2	4	63	1.29
8357784--8357827	17	2.6	17	88	0	61	31	4	2	61	1.28
8357795--8357827	11	2.8	12	90	9	59	33	6	0	60	1.21
8358235--8358284	26	2.0	24	88	7	73	36	6	16	42	1.72
8358840--8358914	11	7.2	11	77	10	61	14	5	1	78	0.99
8358839--8358924	6	13.7	6	71	21	61	15	5	1	77	1.01
8358845--8358914	31	2.3	31	87	9	99	14	5	1	78	1.00
8358834--8358914	10	8.4	9	73	17	65	14	6	1	77	1.02
8358858--8358924	26	2.5	26	83	11	75	14	5	1	77	1.03
8358880--8358929	16	3.0	17	82	8	50	18	6	0	76	0.99
8358948--8359216	61	4.5	61	84	10	340	49	6	11	32	1.65
8359115--8359322	105	2.0	105	92	1	346	49	6	11	33	1.64
8359229--8359575	60	5.8	59	84	7	448	45	6	12	35	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8359221--8359575	120	2.9	120	91	1	568	45	7	12	34	1.69
8359244--8359575	180	1.8	179	87	6	501	45	6	12	34	1.70
8359612--8359640	6	4.8	6	100	0	58	17	0	13	68	1.20
8362014--8362130	62	1.9	62	82	3	146	36	12	11	38	1.81
8362258--8362404	63	2.3	63	77	6	154	35	14	10	40	1.80
8366073--8366184	32	3.5	32	72	13	79	58	3	0	37	1.15
8366124--8366170	14	3.4	14	77	11	60	53	8	0	38	1.32
8366117--8366170	28	2.0	27	96	3	99	55	7	0	37	1.28
8366220--8366269	21	2.5	20	87	9	75	30	14	4	52	1.59
8366226--8366273	21	2.3	21	92	0	78	31	12	4	52	1.58
8366109--8366432	159	2.0	159	100	0	648	46	10	4	38	1.58
8366283--8366329	14	3.4	14	77	11	60	53	8	0	38	1.32
8366276--8366329	28	2.0	27	96	3	99	55	7	0	37	1.28
8366379--8366434	21	2.8	20	86	10	78	30	12	3	53	1.55
8366385--8366434	21	2.4	21	93	0	82	30	12	4	54	1.55
8367163--8367606	218	2.0	218	99	0	870	28	22	18	31	1.97
8370805--8370851	14	3.4	14	77	11	60	53	8	0	38	1.32
8370797--8370851	28	2.0	27	96	3	101	54	7	0	38	1.28
8372521--8372546	12	2.2	12	100	0	52	65	0	7	26	1.20
8372734--8372786	25	2.1	24	82	10	61	50	1	1	45	1.23
8374130--8374182	27	2.0	27	88	0	79	60	0	0	39	0.97
8377787--8377821	18	1.9	18	88	0	52	34	8	2	54	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8378103--8378204	51	2.0	51	96	0	186	36	15	22	25	1.94
8378800--8378952	43	3.6	42	75	11	118	44	13	8	33	1.74
8381865--8381897	16	2.1	16	88	11	50	51	6	3	39	1.42
8382308--8382341	12	2.8	12	90	4	50	29	0	2	67	1.05
8382764--8382814	26	1.9	27	88	4	77	29	0	3	66	1.09
8382917--8382942	10	2.6	10	100	0	52	76	7	0	15	0.99
8383882--8383924	20	2.2	20	91	4	70	16	4	6	72	1.24
8384113--8384404	49	6.0	48	83	8	317	37	21	13	27	1.91
8384111--8384404	47	6.1	47	83	7	360	37	21	13	27	1.91
8384111--8384404	98	3.1	96	86	5	416	37	21	13	27	1.91
8384369--8384439	35	2.0	35	91	0	115	40	15	14	29	1.86
8384322--8384475	82	1.9	82	90	0	245	39	19	12	28	1.88
8384404--8384777	47	7.6	47	83	8	426	37	21	13	27	1.91
8384404--8384777	96	3.8	95	81	8	455	37	21	13	27	1.91
8384597--8384712	57	2.0	57	98	0	223	36	21	16	25	1.94
8384718--8384957	118	2.0	118	94	0	417	31	20	7	40	1.81
8391332--8391767	144	2.9	152	84	9	544	33	19	13	33	1.91
8391333--8391778	146	2.9	157	84	8	459	33	19	13	34	1.90
8392560--8392631	30	2.5	29	71	10	67	58	1	8	31	1.36
8395159--8395230	23	3.1	23	72	9	65	36	1	1	61	1.14
8395658--8395745	15	5.6	16	85	6	117	25	0	26	48	1.51
8395658--8395747	31	2.8	33	86	8	134	25	0	25	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8397332--8397365	17	2.1	17	94	5	61	50	0	0	50	1.00
8397567--8397637	36	2.0	36	88	0	106	50	11	19	18	1.76
8397713--8397831	37	3.2	37	85	0	157	44	18	21	15	1.86
8397904--8398016	34	3.3	34	81	9	131	47	13	21	17	1.81
8397963--8398328	173	2.1	172	82	5	445	48	13	17	21	1.80
8403156--8403190	16	2.2	16	89	0	52	65	2	22	8	1.34
8411012--8411099	15	5.6	16	85	6	108	26	0	26	47	1.52
8410997--8411102	31	3.4	31	83	5	126	25	0	26	48	1.52
8410991--8411103	15	7.3	15	72	15	88	24	0	28	46	1.53
8411512--8411580	37	1.9	35	82	8	86	71	2	1	24	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77