genome.fa.s179.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  49  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9533409--9533437	10	2.9	10	100	0	58	31	0	0	68	0.89
9538263--9538296	16	2.1	16	94	0	59	73	0	0	26	0.83
9539103--9539174	35	2.1	35	82	12	89	33	1	0	65	1.02
9542963--9542993	2	15.5	2	100	0	62	51	0	0	48	1.00
9544559--9544586	14	2.0	14	100	0	56	57	14	7	21	1.61
9546178--9546216	2	19.5	2	100	0	78	51	0	0	48	1.00
9546282--9546326	16	2.6	17	82	6	56	73	11	4	11	1.23
9547404--9547460	27	2.1	27	96	0	105	24	14	24	36	1.92
9552983--9553007	13	1.9	13	100	0	50	32	4	0	64	1.12
9554915--9554947	13	2.4	14	85	10	50	0	21	0	78	0.75
9554918--9554954	17	2.1	18	90	5	58	0	21	0	78	0.75
9554927--9554978	18	3.0	18	76	15	56	7	17	0	75	1.03
9555402--9555481	39	2.1	39	100	0	160	37	18	10	33	1.84
9557085--9557109	13	1.9	13	100	0	50	24	0	16	60	1.36
9558709--9558782	27	2.7	27	78	0	85	36	14	6	41	1.73
9559070--9559108	12	3.4	12	82	13	55	41	0	7	51	1.31
9564974--9565020	14	3.5	14	80	11	62	17	0	4	78	0.90
9565414--9565454	19	2.1	20	86	4	57	43	21	9	24	1.83
9566019--9566049	9	3.4	9	90	0	53	61	0	6	32	1.21
9566057--9566146	26	3.5	26	78	6	92	33	23	21	22	1.97
9566063--9566156	26	3.6	26	80	0	89	34	23	22	20	1.97
9566350--9567124	119	6.5	119	77	3	644	44	13	21	20	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9566350--9567124	238	3.3	236	77	5	716	44	13	21	20	1.85
9566350--9567124	357	2.2	357	78	2	786	44	13	21	20	1.85
9567308--9567394	41	2.1	42	82	6	106	35	17	8	39	1.79
9567964--9568001	17	2.2	18	90	4	60	5	2	7	84	0.86
9577689--9577747	24	2.5	24	97	0	109	49	11	20	18	1.79
9578333--9578378	22	2.1	22	92	4	76	17	4	8	69	1.31
9578449--9578496	18	2.6	19	81	12	57	77	4	4	14	1.08
9578456--9578497	19	2.2	19	83	8	50	78	4	2	14	1.01
9584245--9584282	19	2.1	18	90	5	58	47	2	0	50	1.15
9587233--9587271	19	2.1	18	90	4	60	48	2	0	48	1.15
9587564--9587647	29	3.1	27	75	16	66	45	4	1	48	1.31
9587611--9587644	16	2.1	16	88	0	50	44	5	0	50	1.26
9588461--9588494	13	2.6	13	90	0	50	50	0	11	38	1.39
9590546--9590604	15	3.6	17	73	15	61	62	1	1	33	1.15
9590547--9590596	3	17.0	3	82	12	59	64	2	0	34	1.05
9590715--9590763	18	2.8	18	77	20	59	67	2	2	28	1.13
9590721--9590763	11	3.8	11	81	6	50	67	2	2	27	1.15
9590967--9591162	29	6.7	29	69	7	110	46	30	2	20	1.64
9591007--9591175	87	1.9	87	90	0	266	49	28	1	20	1.59
9591007--9591203	87	2.3	87	87	1	261	49	28	2	19	1.60
9591155--9591217	14	4.6	14	84	2	83	53	26	1	17	1.52
9591070--9591217	29	5.2	28	73	12	90	52	27	1	19	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9591155--9591239	41	2.0	43	86	4	120	51	25	4	17	1.65
9591155--9591271	14	8.4	14	69	10	71	51	26	5	17	1.66
9591225--9591287	28	2.3	27	86	8	90	52	28	4	14	1.62
9602036--9602119	14	6.2	14	70	23	56	50	3	0	46	1.19
9603049--9603147	31	3.2	31	86	0	135	45	9	9	36	1.68
9607225--9607412	91	2.0	94	93	4	328	24	15	21	38	1.92
9613607--9613650	22	2.0	22	95	0	79	43	13	11	31	1.80
9617094--9617128	18	1.9	18	88	0	52	37	25	14	22	1.92
9617505--9617548	22	2.0	22	95	0	79	43	13	11	31	1.80
9623778--9623816	19	2.0	20	90	5	62	43	0	0	56	0.99
9629960--9629998	12	3.3	12	85	7	53	12	0	5	82	0.83
9630295--9630326	1	32.0	1	100	0	64	100	0	0	0	0.00
9630867--9630893	2	13.5	2	100	0	54	48	0	0	51	1.00
9633617--9633675	17	3.8	16	73	17	52	49	0	0	50	1.00
9644183--9644227	21	2.2	21	84	4	65	17	0	2	80	0.82
9645447--9645490	17	2.4	19	85	11	65	75	0	0	25	0.81
9660832--9660910	38	2.1	38	100	0	158	24	22	22	30	1.99
9668060--9668101	3	14.0	3	100	0	84	66	0	0	33	0.92
9671703--9671761	29	2.0	29	90	6	93	37	10	10	42	1.73
9676133--9676169	12	3.0	13	88	7	51	43	0	0	56	0.99
9677336--9677365	15	1.9	16	93	6	53	53	0	0	46	1.00
9687523--9687734	105	2.0	105	98	0	406	38	17	15	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9689405--9689450	21	2.3	20	81	7	58	15	6	0	78	0.95
9689409--9689450	10	4.1	10	82	11	50	14	7	0	78	0.95
9693516--9693566	25	2.0	25	84	3	66	23	19	13	43	1.87
9697066--9697099	14	2.3	15	90	5	52	55	0	5	38	1.24
9697264--9697348	43	1.9	46	80	7	104	52	2	0	44	1.13
9698180--9698226	20	2.3	20	85	7	60	48	0	0	51	1.00
9698177--9698206	12	2.4	12	94	5	51	46	0	0	53	1.00
9702929--9702983	24	2.3	24	96	0	101	7	30	23	38	1.82
9703232--9703270	2	19.5	2	100	0	78	51	0	48	0	1.00
9710562--9710588	2	13.5	2	100	0	54	48	0	0	51	1.00
9712714--9712750	2	20.0	2	84	15	53	48	0	0	51	1.00
9712717--9712748	16	2.0	16	100	0	64	50	0	0	50	1.00
9713430--9713464	17	2.0	18	88	5	54	45	2	0	51	1.16
9714975--9715035	31	2.0	31	100	0	122	59	11	9	19	1.60
9715269--9715358	45	2.0	45	88	0	135	25	25	15	33	1.95
9720664--9720688	2	12.5	2	100	0	50	52	0	0	48	1.00
9722898--9722922	7	3.6	7	100	0	50	12	0	12	76	1.04
9728051--9728097	24	2.0	24	100	0	94	29	12	21	36	1.91
9728232--9728278	3	15.7	3	100	0	94	34	0	0	65	0.93
9730082--9730119	19	2.0	19	85	10	51	63	7	0	28	1.23
9730718--9730808	33	2.8	33	96	3	166	35	19	36	8	1.83
9732786--9732862	15	5.1	15	73	21	63	49	0	2	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9732808--9732869	29	2.1	29	82	11	74	46	1	3	48	1.28
9734350--9734396	2	24.5	2	78	8	53	44	0	0	55	0.99
9735402--9735443	21	2.0	21	81	9	50	35	0	2	61	1.09
9736128--9736180	24	2.4	21	78	9	61	41	0	0	58	0.98
9740527--9740566	18	2.3	17	87	8	62	70	0	0	30	0.88
9740527--9740566	16	2.4	16	88	12	55	70	0	0	30	0.88
9741245--9741306	26	2.4	26	86	2	81	43	3	3	50	1.34
9741379--9741408	15	2.0	15	100	0	60	40	0	0	60	0.97
9741362--9741406	8	5.9	8	82	7	58	42	0	0	57	0.98
9741362--9741414	23	2.3	23	93	3	90	39	0	0	60	0.97
9741352--9741415	12	5.2	12	70	20	51	37	1	0	60	1.06
9742603--9742639	18	2.0	18	89	5	56	35	0	2	62	1.10
9742972--9743054	31	2.6	31	79	7	96	50	1	2	45	1.22
9743104--9743143	19	2.2	19	91	8	66	30	0	0	70	0.88
9743104--9743163	19	3.3	18	84	9	59	33	1	0	65	1.03
9743752--9743804	26	2.2	23	78	15	54	54	5	9	30	1.55
9743904--9743972	29	2.4	29	73	9	68	55	7	11	26	1.61
9744054--9744106	27	2.0	27	85	10	74	58	3	1	35	1.27
9746653--9746683	16	1.9	16	93	0	53	48	6	6	38	1.55
9756830--9756873	14	3.2	13	78	12	52	56	0	2	40	1.11
9763131--9763158	13	2.2	13	100	0	56	21	7	10	60	1.53
9768035--9768065	13	2.3	14	94	5	55	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9768084--9768117	17	2.1	17	88	5	52	55	0	0	44	0.99
9768370--9768413	10	4.1	10	85	11	52	31	9	2	56	1.43
9768642--9768689	15	3.3	14	88	5	51	35	2	2	60	1.20
9768654--9768695	14	2.9	15	86	13	61	35	0	0	64	0.94
9768727--9768778	23	2.3	23	86	6	70	51	1	0	46	1.12
9770821--9770910	28	3.2	28	76	9	76	55	2	0	42	1.12
9771279--9771306	14	2.0	14	100	0	56	64	0	0	35	0.94
9771329--9771378	22	2.3	21	83	6	64	58	2	8	32	1.39
9771472--9771631	18	8.7	18	71	19	107	53	1	2	42	1.25
9771515--9771648	13	10.5	12	71	20	87	53	2	2	41	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77