genome.fa.s179.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  72  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14481067--14481104	19	2.0	20	89	5	60	42	5	5	47	1.48
14493676--14493702	2	13.5	2	100	0	54	51	0	0	48	1.00
14501484--14501510	2	13.5	2	100	0	54	48	0	0	51	1.00
14502673--14502711	3	13.0	3	100	0	78	66	0	0	33	0.92
14502714--14502747	3	11.0	3	93	6	59	32	2	0	64	1.08
14502852--14502883	3	10.7	3	93	0	55	0	28	0	71	0.86
14502853--14503011	82	1.9	82	93	2	275	37	11	9	40	1.75
14503596--14503634	3	13.0	3	100	0	78	66	0	0	33	0.92
14503637--14503677	3	13.7	3	100	0	82	34	0	0	65	0.93
14503870--14503916	3	15.7	3	90	0	76	2	29	0	68	1.02
14504444--14504480	3	12.3	3	100	0	74	32	0	0	67	0.91
14505677--14506213	254	2.1	251	84	5	677	36	13	12	37	1.83
14505677--14506238	255	2.2	253	83	5	656	36	14	11	37	1.83
14506675--14506877	62	3.3	62	77	10	168	34	13	11	39	1.82
14506762--14506907	62	2.3	63	83	4	170	32	17	9	41	1.81
14505931--14507159	668	1.8	668	81	5	1507	34	13	12	38	1.83
14507039--14507473	62	6.9	62	69	13	212	33	12	12	41	1.81
14507291--14507473	63	2.9	63	75	3	165	32	11	13	42	1.79
14508295--14508337	20	2.2	20	91	0	68	44	4	0	51	1.22
14508772--14508825	20	2.7	21	78	18	62	35	0	1	62	1.06
14510707--14510752	22	2.1	21	84	4	56	60	0	2	36	1.09
14513473--14513498	12	2.2	12	100	0	52	42	7	15	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14515056--14515097	13	2.9	14	82	17	50	35	4	0	59	1.19
14515046--14515136	16	5.5	16	72	22	73	36	3	0	60	1.13
14515170--14515215	23	2.0	24	82	4	58	47	8	4	39	1.54
14534356--14534409	20	2.9	19	82	15	60	38	1	3	55	1.28
14534357--14534400	20	2.2	20	88	8	63	34	2	4	59	1.30
14534369--14534408	18	2.1	20	90	9	66	35	0	2	62	1.09
14535456--14535500	19	2.2	22	84	11	60	46	8	0	44	1.34
14537443--14537490	19	2.5	19	83	6	53	68	4	6	20	1.28
14537708--14537751	20	2.1	21	84	12	56	29	0	0	70	0.88
14542337--14542371	8	4.4	8	96	0	52	57	0	0	42	0.99
14542341--14542373	2	16.5	2	93	0	57	54	0	0	45	0.99
14543241--14543294	27	2.0	27	85	3	74	62	0	3	33	1.12
14543408--14543442	18	1.9	18	100	0	70	60	0	0	40	0.97
14549191--14549251	23	2.8	22	80	9	63	49	0	0	50	1.00
14549204--14549251	22	2.2	22	82	17	57	50	0	0	50	1.00
14549584--14549652	26	2.8	25	69	20	63	42	0	1	56	1.08
14569034--14569085	25	2.1	25	92	0	86	38	5	9	46	1.61
14569441--14569489	19	2.4	21	83	16	68	55	12	2	30	1.48
14573108--14573150	5	9.0	5	80	19	56	37	0	0	62	0.95
14573112--14573151	11	3.5	11	87	12	62	35	0	0	65	0.93
14573108--14573159	25	2.1	25	89	7	79	38	0	0	61	0.96
14581100--14581180	32	2.6	32	78	5	85	48	2	1	48	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14581740--14581770	15	2.1	15	93	0	53	45	3	6	45	1.45
14584551--14584580	2	15.0	2	100	0	60	50	0	0	50	1.00
14585611--14585651	15	2.6	16	81	18	50	29	7	2	60	1.36
14602085--14602227	52	2.8	52	84	4	173	45	6	18	29	1.74
14607037--14607080	20	2.1	21	91	4	72	47	0	0	52	1.00
14607098--14607141	9	4.7	9	86	8	61	63	0	0	36	0.95
14607099--14607141	19	2.3	19	95	0	77	65	0	0	34	0.93
14608068--14608175	50	2.1	51	84	6	139	29	5	3	61	1.36
14611709--14611788	33	2.4	32	81	12	90	47	1	6	45	1.36
14611702--14611788	17	5.1	17	72	10	61	47	1	5	45	1.34
14611819--14611948	69	1.9	69	82	6	167	43	3	3	48	1.39
14611803--14611948	35	4.3	33	76	11	98	43	3	4	47	1.41
14611814--14611948	34	4.0	32	80	8	144	42	3	3	49	1.38
14612136--14612191	14	3.9	14	71	17	51	58	8	1	30	1.39
14613163--14613200	14	2.8	14	84	4	51	36	0	0	63	0.95
14617845--14617870	5	5.2	5	100	0	52	80	0	0	19	0.71
14617543--14618096	185	3.1	177	75	8	530	44	6	5	43	1.53
14618437--14619063	180	3.5	179	79	6	569	44	6	6	41	1.57
14627847--14627884	2	19.0	2	94	0	67	47	0	2	50	1.15
14628732--14628767	12	2.8	12	91	8	54	50	0	0	50	1.00
14632068--14632206	69	2.0	69	98	0	269	14	21	26	37	1.92
14632730--14632777	15	3.2	15	82	11	71	62	12	25	0	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14634734--14634758	9	2.8	9	100	0	50	0	8	0	92	0.40
14635625--14635659	15	2.3	15	90	5	52	2	82	0	14	0.77
14637289--14637335	3	15.0	3	79	16	51	2	34	2	61	1.20
14637287--14637344	26	2.3	26	85	8	77	1	29	3	65	1.19
14653851--14653904	23	2.3	23	71	9	56	29	1	9	59	1.39
14653930--14653971	11	3.6	11	81	12	57	69	0	0	30	0.89
14653925--14653963	16	2.7	15	88	11	55	69	0	0	30	0.89
14653978--14654031	23	2.3	24	81	9	67	57	0	0	42	0.98
14655020--14655087	22	3.2	22	74	16	70	25	7	5	61	1.45
14659520--14659566	23	2.0	23	95	0	85	48	19	10	21	1.78
14667453--14667789	171	2.0	171	96	0	620	37	13	21	27	1.91
14677068--14677117	17	2.7	18	78	21	59	16	10	18	56	1.67
14677068--14677118	20	2.7	19	83	16	63	15	9	17	56	1.65
14679168--14679211	22	2.0	22	95	0	79	43	13	11	31	1.80
14681666--14681724	25	2.4	25	88	5	86	42	18	23	15	1.88
14681875--14681918	22	2.0	22	95	0	79	43	13	11	31	1.80
14683969--14684010	20	2.1	20	86	0	57	40	2	2	54	1.26
14696019--14696047	10	2.7	11	89	10	51	89	0	10	0	0.48
14696022--14696047	10	2.6	10	100	0	52	92	0	7	0	0.39
14708053--14708091	17	2.3	17	86	0	51	56	0	0	43	0.99
14708213--14708279	32	2.1	32	82	0	80	40	1	4	53	1.30
14708333--14708410	23	3.2	25	78	15	74	38	1	0	60	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14708343--14708416	25	3.0	23	79	13	76	37	1	1	59	1.14
14708575--14708601	2	13.5	2	100	0	54	51	0	0	48	1.00
14712813--14712854	21	2.0	21	81	9	50	54	2	0	42	1.13
14712938--14713008	33	2.2	33	94	0	124	32	14	9	43	1.78
14719472--14719501	16	1.9	16	93	6	53	66	0	0	33	0.92
14722995--14723037	10	4.4	10	80	16	54	30	0	0	69	0.88
14722994--14723027	11	3.1	11	87	12	52	29	0	0	70	0.87
14733278--14733303	2	13.0	2	100	0	52	50	0	0	50	1.00
14738953--14738986	2	17.0	2	100	0	68	0	50	0	50	1.00
14741292--14741330	19	2.0	21	85	10	55	33	0	0	66	0.92
14741310--14741380	30	2.3	30	78	2	79	40	0	1	57	1.07
14741347--14741399	23	2.5	22	90	9	83	49	0	0	50	1.00
14744091--14744175	42	2.0	42	95	0	152	40	8	12	38	1.74
14745948--14746006	25	2.4	25	97	0	109	28	22	33	15	1.94
14746451--14746481	4	7.8	4	92	0	53	0	29	22	48	1.51
14747233--14747311	12	6.9	11	84	12	90	26	0	31	41	1.56
14747233--14747310	24	3.4	24	87	5	117	26	0	32	41	1.56
14747233--14747310	36	2.3	34	91	6	122	26	0	32	41	1.56
14747868--14747907	21	1.9	21	89	0	62	10	2	67	20	1.31
14747948--14747977	9	3.3	9	90	0	51	20	13	43	23	1.86
14747924--14747977	18	2.8	18	76	15	54	24	12	42	20	1.87
14757914--14757939	12	2.2	12	100	0	52	42	26	15	15	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14776438--14776494	25	2.3	25	90	0	87	21	12	12	54	1.69
14778728--14778771	13	3.4	13	81	12	54	61	2	0	36	1.09
14778742--14778785	18	2.4	18	84	3	61	70	0	0	29	0.88
14782573--14782660	43	2.0	43	88	0	131	32	18	19	29	1.95
14783601--14783651	13	3.8	13	76	5	57	43	31	0	25	1.55
14783606--14783729	7	18.4	7	70	20	61	48	26	0	25	1.52
14783603--14783682	27	3.0	27	87	7	101	47	26	0	26	1.52
14783639--14783708	13	5.2	13	77	8	52	48	27	0	24	1.51
14783645--14783715	20	3.5	20	79	7	72	47	25	0	26	1.52
14783663--14783721	20	3.0	20	78	12	59	45	28	0	25	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77