genome.fa.s179.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  39  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7762788--7762853	15	4.2	16	80	3	73	22	0	24	53	1.47
7762780--7762853	31	2.4	31	84	4	96	24	0	24	51	1.49
7762856--7762895	15	2.7	15	88	7	55	17	0	32	50	1.47
7762868--7762907	15	2.7	15	88	0	53	22	0	25	52	1.47
7764440--7764488	14	3.3	15	75	18	57	8	0	24	67	1.18
7764440--7764497	31	1.9	29	86	6	80	10	0	22	67	1.21
7764472--7764534	25	2.4	26	87	10	85	7	0	28	63	1.22
7766053--7766150	49	2.0	49	86	4	135	42	13	9	34	1.76
7766598--7766660	33	1.9	33	96	0	117	33	3	14	49	1.59
7767332--7767370	15	2.6	15	87	0	60	23	0	7	69	1.14
7772952--7773185	62	3.8	61	76	15	207	31	13	13	41	1.82
7772805--7773060	138	1.8	139	82	8	326	33	13	14	38	1.85
7772952--7773178	63	3.7	61	76	9	180	32	13	13	40	1.83
7773691--7773875	64	3.0	61	75	7	165	34	15	10	39	1.82
7776023--7776090	23	3.0	23	78	4	66	55	0	2	41	1.15
7776041--7776101	16	3.8	16	77	10	61	57	1	3	37	1.25
7777674--7777719	18	2.6	18	86	3	58	65	0	13	21	1.26
7780212--7780253	19	2.3	18	91	4	66	9	4	2	83	0.88
7780936--7780990	22	2.4	23	82	14	78	25	5	9	60	1.49
7783583--7783631	23	2.2	21	82	7	53	34	20	4	40	1.71
7791543--7792100	238	2.3	236	80	5	647	19	21	14	44	1.86
7791553--7792100	119	4.6	119	78	5	518	19	21	14	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7792567--7792621	3	18.7	3	92	3	67	32	7	0	60	1.24
7792625--7792678	22	2.6	21	77	8	56	5	14	5	74	1.19
7797400--7797453	25	2.2	25	89	0	81	57	12	11	18	1.64
7802260--7802637	207	1.8	207	90	0	612	41	16	25	16	1.89
7802913--7803454	145	3.7	143	78	8	497	38	14	15	31	1.87
7819199--7819263	29	2.2	29	88	2	94	43	20	26	10	1.84
7824019--7824145	30	4.3	30	75	7	100	43	3	1	51	1.27
7824019--7824148	29	4.4	29	75	8	104	43	3	1	52	1.26
7824171--7824241	19	3.3	22	66	30	55	53	4	2	39	1.35
7824207--7824283	30	2.7	28	84	9	95	59	5	1	33	1.28
7824207--7824283	28	2.7	27	84	13	93	59	5	1	33	1.28
7824262--7824300	18	2.3	17	86	8	53	64	0	0	35	0.94
7825972--7826058	23	3.7	23	70	6	75	54	3	4	37	1.38
7826474--7826515	20	2.1	20	86	0	57	40	16	9	33	1.81
7826501--7826538	20	1.9	20	88	0	58	52	13	5	28	1.61
7829925--7829989	29	2.2	30	84	10	82	61	6	3	29	1.35
7830493--7830572	40	2.0	41	82	7	101	30	2	8	58	1.41
7830570--7830652	29	2.9	29	77	13	93	38	2	4	54	1.35
7831310--7831367	20	2.8	21	84	2	73	46	5	1	46	1.35
7833083--7833136	21	2.6	19	81	16	63	18	0	29	51	1.46
7833668--7833720	18	2.8	19	76	21	58	71	3	0	24	1.02
7833979--7834033	28	2.0	28	85	0	74	18	18	21	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7834753--7834797	23	2.0	23	86	0	63	28	2	2	66	1.15
7834766--7834797	16	2.0	16	93	0	55	25	3	0	71	1.00
7835206--7835282	34	2.3	34	93	0	127	50	12	20	15	1.77
7835355--7835674	133	2.4	135	88	1	455	44	13	19	22	1.86
7835355--7835708	134	2.6	133	85	4	444	44	12	20	22	1.86
7835688--7835979	135	2.2	135	81	3	327	45	13	19	21	1.84
7848546--7848599	21	2.6	21	81	16	67	14	0	29	55	1.40
7849436--7849498	28	2.2	28	83	5	74	19	17	20	42	1.89
7850241--7850285	23	2.0	23	86	0	63	28	2	2	66	1.15
7850254--7850285	16	2.0	16	93	0	55	25	3	0	71	1.00
7850288--7850326	12	3.2	12	88	0	60	43	2	0	53	1.14
7854477--7854515	20	2.0	20	85	10	53	25	2	5	66	1.25
7854757--7854812	20	2.8	19	77	17	60	50	3	1	44	1.29
7854899--7854956	25	2.2	27	82	14	68	63	1	6	27	1.29
7855240--7855282	9	4.8	9	80	8	52	44	2	4	48	1.36
7855250--7855288	17	2.3	17	86	8	53	43	2	7	46	1.46
7855332--7855370	16	2.4	16	83	8	53	20	2	2	74	1.06
7855406--7855454	25	1.9	26	87	4	73	22	2	6	69	1.21
7855463--7855530	31	2.2	32	82	12	88	33	0	5	60	1.21
7856310--7856346	17	2.1	17	90	10	56	54	0	0	45	1.00
7863345--7863457	62	1.9	61	83	10	153	38	9	4	46	1.57
7868484--7868514	2	15.5	2	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7869893--7869927	18	1.9	18	88	11	54	14	0	11	74	1.08
7870517--7870583	14	4.5	15	77	11	57	71	2	0	25	1.00
7870537--7870578	20	2.1	20	86	8	59	76	4	0	19	0.96
7874864--7874897	17	2.0	17	94	0	59	73	5	5	14	1.21
7875772--7876291	40	13.6	39	71	12	256	29	11	17	42	1.84
7875744--7876041	73	4.1	73	83	0	373	29	13	16	40	1.86
7875744--7876029	146	2.0	146	87	1	412	29	13	16	40	1.86
7875991--7876291	40	7.6	39	80	6	275	28	10	17	42	1.83
7876528--7876583	3	18.7	3	100	0	112	33	0	0	66	0.92
7877955--7877997	3	14.3	3	100	0	86	67	0	0	32	0.91
7878115--7878177	20	3.2	20	77	11	67	73	4	0	22	1.02
7878124--7878173	21	2.2	21	86	10	64	74	6	0	20	1.03
7879286--7880114	206	4.0	206	81	6	1055	32	19	14	33	1.92
7879626--7879774	74	2.0	74	98	0	289	28	21	14	34	1.93
7879978--7880251	135	2.0	135	92	0	449	28	23	15	32	1.95
7880113--7880663	208	2.7	206	95	0	967	31	19	15	33	1.93
7883010--7883064	27	2.0	27	100	0	110	43	7	7	41	1.60
7883016--7883074	27	2.2	27	87	6	84	47	6	5	40	1.52
7883772--7884055	154	1.8	153	88	3	437	42	5	4	47	1.47
7884385--7884666	153	1.8	154	89	2	442	41	4	4	48	1.46
7887197--7887276	22	3.8	22	73	18	62	46	5	6	42	1.51
7887348--7887450	22	4.8	22	69	8	61	54	5	4	34	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7887442--7887496	21	2.5	22	79	5	67	56	3	9	30	1.48
7887446--7887519	11	6.9	11	70	4	53	56	2	6	33	1.40
7887804--7888369	22	25.7	22	71	9	249	48	6	8	35	1.61
7888427--7888478	22	2.4	22	86	0	77	46	5	1	46	1.38
7888439--7888555	22	5.3	22	72	10	87	43	5	10	40	1.63
7888794--7888845	22	2.4	22	80	0	59	48	5	7	38	1.56
7889094--7889176	22	3.8	22	82	3	78	46	8	4	39	1.55
7889390--7889425	11	3.4	11	84	7	56	58	2	0	38	1.13
7889436--7889535	46	2.2	46	83	7	123	48	5	9	38	1.57
7889454--7889545	24	4.0	23	79	10	80	45	6	7	40	1.58
7898331--7898376	21	2.2	20	84	3	56	52	0	0	47	1.00
7898398--7898466	23	3.0	22	81	12	77	62	1	1	34	1.13
7898745--7898802	19	2.9	22	80	12	63	36	0	0	63	0.94
7901322--7901368	16	2.8	16	81	15	51	29	0	4	65	1.11
7901338--7901379	16	2.5	17	84	3	50	33	0	4	61	1.17
7901322--7901377	18	3.2	17	80	10	60	30	0	5	64	1.16
7905400--7905431	3	10.7	3	100	0	64	68	0	0	31	0.90
7906628--7906867	65	3.7	65	81	0	273	46	12	19	22	1.82
7908380--7908436	22	2.5	22	78	15	62	77	1	10	10	1.07
7909550--7909782	67	3.5	66	72	10	193	22	15	12	48	1.79
7909605--7909913	68	4.6	66	76	7	244	24	15	12	46	1.80
7909493--7909839	135	2.6	136	86	3	443	23	16	12	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7909831--7910323	102	4.8	102	84	1	605	24	18	11	45	1.82
7909827--7910323	204	2.4	203	86	0	679	24	18	11	45	1.83
7910239--7910391	68	2.2	68	89	0	216	26	18	9	45	1.79
7910307--7910454	33	4.4	33	71	11	111	27	19	9	43	1.81
7910295--7910516	102	2.2	102	88	4	340	23	20	12	43	1.85
7910126--7910495	170	2.2	169	87	0	524	24	18	11	45	1.83
7910881--7910929	12	4.1	12	86	0	62	57	0	2	40	1.10
7910882--7910970	24	4.1	21	74	18	67	60	1	1	37	1.11
7912062--7912113	22	2.3	22	83	9	61	38	1	5	53	1.36
7912185--7912229	3	16.0	3	82	13	60	68	0	0	31	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77