genome.fa.s179.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  41  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8097200--8097264	12	5.3	12	73	10	60	49	0	1	49	1.10
8100113--8100161	25	2.0	25	84	11	66	53	4	8	34	1.50
8100680--8100747	34	2.0	34	91	0	109	48	8	2	39	1.49
8106854--8106951	49	2.0	49	91	0	160	32	15	6	45	1.70
8108949--8108987	14	2.7	14	88	4	51	17	0	2	79	0.84
8108962--8108987	7	3.7	7	100	0	52	15	0	0	84	0.62
8110204--8110288	33	2.6	33	82	0	107	30	14	7	48	1.70
8110479--8110556	33	2.5	31	77	6	77	25	15	8	50	1.73
8110479--8110572	32	3.0	31	74	11	84	25	17	9	47	1.77
8110968--8111080	12	9.5	11	71	19	68	22	4	2	70	1.17
8110995--8111034	21	1.9	21	89	0	62	27	2	0	70	1.01
8111000--8111073	6	12.7	6	75	13	57	24	4	1	70	1.13
8110979--8111080	20	4.9	21	74	9	66	22	4	1	70	1.16
8111000--8111070	36	2.0	35	89	8	108	22	4	1	71	1.11
8111002--8111093	47	2.0	47	81	16	111	23	6	2	67	1.25
8113986--8114012	14	1.9	14	100	0	54	14	7	0	77	0.97
8114271--8114308	18	2.2	18	95	4	69	23	10	5	60	1.50
8115576--8115616	20	2.0	20	90	0	64	34	4	14	46	1.66
8120163--8120217	25	2.2	25	90	3	85	36	5	9	49	1.58
8120579--8120658	41	2.0	41	85	5	108	31	17	16	35	1.92
8134090--8134146	24	2.3	26	78	9	64	28	1	7	63	1.30
8134148--8134195	21	2.3	21	89	3	71	27	2	10	60	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8134122--8134226	49	2.1	49	81	6	115	30	2	6	60	1.37
8134191--8134242	19	2.7	20	76	5	54	28	1	3	65	1.21
8140630--8140658	3	9.7	3	100	0	58	34	0	65	0	0.93
8146651--8146677	14	1.9	14	100	0	54	51	7	3	37	1.48
8154909--8154945	16	2.4	16	86	8	51	0	2	24	72	0.97
8155485--8155596	31	3.6	31	75	7	111	48	5	4	41	1.46
8157571--8157598	4	7.0	4	100	0	56	75	0	25	0	0.81
8159783--8159819	15	2.5	14	87	12	56	2	27	0	70	1.01
8163152--8163183	2	16.0	2	93	0	55	46	0	3	50	1.17
8171000--8171038	12	3.2	12	85	3	51	41	0	5	53	1.23
8171654--8171682	13	2.2	13	100	0	58	72	6	6	13	1.26
8176504--8176684	64	2.9	62	90	4	276	31	11	6	50	1.64
8176699--8176731	10	3.3	10	87	12	50	81	0	0	18	0.68
8176699--8176736	19	2.0	19	85	10	51	78	0	2	18	0.86
8177140--8177183	20	2.2	20	92	4	72	25	20	27	27	1.99
8177235--8177305	31	2.3	31	85	4	99	25	23	21	29	1.99
8178072--8178109	9	4.2	9	87	9	51	0	0	10	89	0.49
8178080--8178106	10	2.7	10	100	0	54	0	0	7	92	0.38
8178116--8178933	41	20.1	41	88	6	1102	37	21	17	23	1.94
8180517--8180550	17	2.0	17	88	0	50	2	17	5	73	1.16
8184012--8184361	179	2.0	180	90	4	555	34	13	6	45	1.70
8184012--8184335	120	2.7	119	94	3	564	34	14	6	44	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8184014--8184352	59	5.7	59	86	7	472	34	14	6	45	1.69
8184383--8184415	10	3.3	10	87	12	50	81	0	0	18	0.68
8184383--8184420	19	2.0	19	85	10	51	78	0	2	18	0.86
8184988--8185041	25	2.2	25	83	6	65	37	18	5	38	1.74
8185405--8185444	15	2.5	17	77	22	50	75	2	5	17	1.10
8185439--8185553	28	3.9	29	70	21	69	63	6	0	29	1.20
8190028--8190071	22	2.0	22	91	8	72	31	9	13	45	1.75
8190654--8190694	19	2.2	19	83	12	50	65	4	14	14	1.42
8199357--8199395	13	2.7	14	84	15	53	66	0	25	7	1.18
8200904--8201066	22	7.6	22	75	10	81	52	3	5	38	1.43
8201009--8201066	11	5.3	11	77	8	64	55	0	3	41	1.17
8200914--8201076	83	2.0	83	81	4	195	51	3	6	39	1.42
8201009--8201172	65	2.5	66	73	11	147	50	7	4	37	1.50
8201108--8201172	22	3.0	21	80	8	76	49	12	3	35	1.56
8201237--8201332	22	4.3	23	75	17	62	53	3	9	34	1.49
8201565--8201658	11	8.5	11	71	0	62	51	5	3	40	1.41
8201424--8201642	22	9.8	22	71	5	109	47	8	5	39	1.56
8201536--8201648	44	2.5	44	78	1	127	49	8	2	38	1.48
8202137--8202213	21	3.6	21	82	7	75	46	6	7	38	1.59
8202278--8202373	22	4.4	22	78	5	86	48	2	9	39	1.47
8202278--8202375	44	2.2	44	81	3	108	48	3	9	38	1.50
8202384--8202429	22	2.1	22	88	8	67	43	2	13	41	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8203109--8203170	21	3.0	21	78	0	70	41	8	12	37	1.73
8204780--8204873	11	8.5	11	71	0	62	51	5	3	40	1.41
8204751--8204857	22	4.9	22	80	2	108	49	8	2	39	1.48
8204751--8204863	44	2.5	44	78	1	127	49	8	2	38	1.48
8205156--8205442	44	6.5	43	71	9	161	47	5	9	38	1.58
8205136--8205462	22	14.8	21	67	16	99	47	5	8	38	1.57
8205500--8205595	22	4.4	22	76	5	77	50	2	8	39	1.44
8205606--8205651	22	2.1	22	88	8	67	43	2	13	41	1.55
8205708--8205759	22	2.4	22	100	0	104	48	9	3	38	1.54
8205768--8205921	22	7.0	22	70	4	85	40	6	9	42	1.63
8206352--8206413	21	3.0	21	78	0	70	41	8	12	37	1.73
8213676--8213765	29	3.2	27	67	11	81	46	10	5	37	1.61
8213670--8213785	58	2.0	57	98	1	223	43	10	4	42	1.58
8222871--8222948	28	2.7	28	92	7	122	23	3	25	47	1.68
8222935--8223007	13	5.7	13	68	14	53	19	6	28	45	1.76
8222880--8223007	28	4.8	26	81	6	100	21	5	26	46	1.72
8223826--8223874	22	2.2	22	96	0	89	51	20	20	8	1.73
8226560--8226762	63	3.3	62	74	12	182	30	17	13	38	1.89
8226643--8226785	63	2.3	62	85	4	180	31	18	11	37	1.87
8227532--8227571	21	1.9	21	84	0	53	52	0	2	45	1.14
8230008--8230060	6	8.8	6	93	0	70	50	7	1	39	1.41
8230008--8230060	18	2.9	18	91	0	79	50	7	1	39	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8233887--8233920	6	5.7	6	92	0	50	88	8	0	2	0.62
8234276--8234311	16	2.3	15	90	4	54	69	0	2	27	1.02
8239315--8239352	19	1.9	20	89	10	60	71	0	13	15	1.16
8239315--8239357	20	2.0	21	86	8	61	69	0	13	16	1.19
8240474--8240511	17	2.4	16	91	8	60	76	0	0	23	0.79
8241538--8241570	15	2.2	15	89	10	50	87	9	3	0	0.63
8241804--8241861	28	2.2	25	76	11	53	74	0	3	22	0.97
8242340--8242373	2	17.0	2	100	0	68	50	0	0	50	1.00
8244315--8244437	42	2.9	40	78	7	120	44	8	8	39	1.64
8244365--8244451	21	4.2	20	84	8	102	45	9	8	36	1.66
8248191--8248247	26	2.3	25	80	11	64	40	1	1	56	1.20
8248195--8248253	13	4.7	13	76	14	52	37	1	1	59	1.18
8248208--8248252	11	3.8	11	83	13	54	37	2	0	60	1.09
8257721--8257767	12	3.8	13	75	18	55	38	2	0	59	1.09
8257723--8257766	11	3.7	11	82	11	52	38	2	0	59	1.10
8258196--8258229	16	2.1	16	88	0	50	82	0	17	0	0.67
8258491--8258526	6	6.0	6	100	0	72	33	50	0	16	1.46
8278014--8278056	3	14.3	3	100	0	86	67	0	0	32	0.91
8286946--8286986	16	2.6	15	85	11	55	34	0	0	65	0.93
8289070--8289100	16	1.9	16	93	0	53	25	32	0	41	1.56
8289167--8289206	11	3.7	11	93	3	64	0	2	10	87	0.63
8297915--8297957	22	2.0	21	86	4	59	48	11	0	39	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8298069--8298109	21	1.9	21	90	5	64	36	0	2	60	1.10
8298066--8298123	22	2.7	21	81	7	55	41	0	1	56	1.09
8305382--8305408	13	2.1	13	100	0	54	14	14	7	62	1.51
8306315--8306352	20	1.9	20	94	0	67	44	5	0	50	1.24
8314276--8314303	3	9.3	3	100	0	56	32	0	0	67	0.91
8331351--8331389	21	1.9	21	89	5	62	20	30	25	23	1.98
8331421--8331489	9	7.4	9	75	18	61	21	1	2	73	1.04
8331456--8331489	16	2.1	16	89	10	52	26	0	2	70	1.01
8331421--8331578	12	12.3	13	67	19	50	25	1	5	67	1.23
8331998--8332023	13	2.0	13	100	0	52	76	7	0	15	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77