genome.fa.s179.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  60  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12057631--12057751	15	8.5	15	71	17	96	54	3	1	40	1.27
12057733--12057781	23	2.1	23	88	0	71	61	0	2	36	1.08
12057863--12057935	9	8.6	9	70	22	59	49	0	0	50	1.00
12057860--12057900	16	2.7	15	88	7	64	48	0	0	51	1.00
12057863--12057934	25	2.9	24	89	8	108	50	0	0	50	1.00
12057861--12057918	15	4.2	15	73	24	56	50	0	0	50	1.00
12057969--12058026	31	1.9	31	89	6	93	50	0	0	50	1.00
12064952--12064983	14	2.3	14	94	0	55	37	0	0	62	0.95
12065938--12065989	22	2.5	22	93	6	90	50	0	0	50	1.00
12079816--12079893	19	3.8	19	70	15	57	46	3	5	44	1.43
12082161--12082220	29	2.1	29	96	0	111	40	10	23	26	1.86
12093052--12093101	20	2.5	20	87	12	77	54	0	0	46	1.00
12093918--12093958	20	2.0	20	85	0	55	48	0	4	46	1.23
12096962--12096997	2	18.0	2	100	0	72	50	0	0	50	1.00
12102154--12102196	22	2.0	21	82	8	52	67	2	0	30	1.03
12102250--12102389	67	2.1	68	93	1	237	33	5	7	54	1.50
12102265--12102426	67	2.4	66	81	6	166	39	3	7	49	1.49
12102624--12102741	60	1.9	60	83	10	150	40	6	5	47	1.52
12103149--12103353	62	3.3	66	82	10	252	44	6	5	43	1.53
12103244--12103378	62	2.2	63	81	6	159	49	6	5	38	1.51
12103571--12103618	18	2.6	19	78	21	57	58	0	2	39	1.10
12103561--12103610	24	2.2	24	86	10	70	62	0	2	36	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12104046--12104185	31	4.5	32	71	13	89	55	0	0	42	1.10
12104973--12105058	33	2.7	32	80	10	86	52	0	2	45	1.13
12108636--12108669	17	2.0	17	94	0	59	35	5	8	50	1.58
12113750--12113779	2	15.0	2	100	0	60	50	0	0	50	1.00
12120421--12120468	21	2.2	21	85	3	60	31	12	8	47	1.71
12124453--12124506	25	2.2	25	93	3	92	29	9	3	57	1.47
12134354--12134414	20	3.1	20	66	4	52	36	3	8	52	1.48
12134697--12134743	22	2.1	22	92	0	76	53	17	10	19	1.72
12135375--12135437	22	2.9	23	79	11	62	47	7	1	42	1.42
12135451--12135519	11	6.5	11	75	9	54	53	4	2	39	1.36
12135973--12136004	15	2.0	17	88	11	50	37	0	3	59	1.13
12154805--12154847	21	2.0	22	90	4	70	34	6	0	58	1.25
12155349--12155408	18	3.2	18	77	13	50	40	3	1	55	1.27
12155358--12155418	20	3.2	19	86	11	88	39	4	3	52	1.39
12155396--12155449	25	2.1	26	89	3	83	42	3	3	50	1.38
12155392--12155455	25	2.4	27	82	12	78	43	3	3	50	1.33
12155403--12155463	25	2.4	25	78	5	70	39	4	4	50	1.45
12155485--12155531	24	2.0	24	91	0	76	40	2	2	55	1.24
12156559--12156598	20	2.0	20	85	5	53	67	5	2	25	1.23
12166456--12166500	3	15.0	3	100	0	90	33	0	0	66	0.92
12166680--12166729	9	5.9	8	77	13	55	82	0	0	18	0.68
12166697--12166729	13	2.5	13	100	0	66	84	0	0	15	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12167427--12167451	3	8.3	3	100	0	50	68	0	0	32	0.90
12169309--12169568	130	2.0	130	91	0	421	34	16	15	33	1.90
12169604--12169636	17	1.9	17	93	0	57	72	0	6	21	1.05
12170447--12170756	41	7.3	41	79	8	264	26	9	18	45	1.80
12170645--12170777	41	3.2	42	84	7	146	25	8	20	45	1.78
12171257--12171283	5	5.4	5	100	0	54	40	40	18	0	1.51
12175537--12175611	21	3.6	21	71	18	66	45	2	1	50	1.24
12175546--12175584	19	2.0	20	85	5	53	46	2	2	48	1.29
12175577--12175623	21	2.3	21	88	3	69	40	6	0	53	1.27
12176086--12176234	44	3.6	43	75	15	152	38	2	4	55	1.30
12176118--12176205	25	3.8	25	74	21	100	37	2	3	56	1.28
12176130--12176174	18	2.4	19	85	7	56	35	2	4	57	1.31
12176162--12176213	14	3.9	14	75	14	65	44	1	1	51	1.23
12176734--12176781	22	2.0	25	84	11	66	47	2	0	50	1.12
12179487--12179517	12	2.6	12	94	0	53	35	51	12	0	1.40
12182060--12182163	52	2.0	52	90	3	165	50	8	15	25	1.73
12193413--12193480	21	3.3	21	93	2	111	42	5	0	51	1.26
12194072--12194098	6	4.5	6	100	0	54	33	37	29	0	1.58
12194271--12194322	3	17.3	3	100	0	104	34	0	0	65	0.93
12194531--12194573	3	14.3	3	100	0	86	67	0	0	32	0.91
12195384--12195425	21	2.0	21	90	0	66	38	33	0	28	1.58
12200819--12200869	24	2.1	26	78	14	63	21	11	15	50	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12205158--12205220	7	8.9	7	75	16	58	69	0	1	28	0.97
12205152--12205224	27	2.9	24	84	11	85	68	0	1	30	0.98
12206251--12206315	18	3.6	18	93	4	105	41	1	4	52	1.31
12206375--12206408	17	2.0	17	88	0	50	52	0	0	47	1.00
12206379--12206405	14	1.9	14	100	0	54	55	0	0	44	0.99
12207381--12207471	31	3.0	29	70	16	78	45	7	9	37	1.66
12207509--12207548	19	2.1	19	90	0	62	55	17	0	27	1.43
12207612--12207645	17	2.0	17	88	0	50	58	0	0	41	0.98
12208650--12208692	20	2.1	21	87	12	63	72	2	0	25	0.97
12223647--12223673	10	2.7	10	100	0	54	7	0	0	92	0.38
12224099--12224151	25	2.1	25	86	6	72	54	0	3	41	1.18
12224133--12224173	20	2.2	19	86	8	57	68	4	0	26	1.10
12224254--12224295	18	2.5	17	88	7	59	64	0	2	33	1.07
12224874--12224905	3	10.7	3	100	0	64	68	0	0	31	0.90
12227942--12227984	14	3.0	15	83	10	54	48	2	0	48	1.14
12228780--12228913	44	3.0	44	96	0	250	41	1	12	44	1.52
12229308--12229357	24	2.1	24	92	0	82	20	18	2	60	1.46
12231299--12231344	22	2.1	22	95	0	83	56	6	8	28	1.54
12235609--12235638	11	2.9	10	90	9	51	40	0	0	60	0.97
12237105--12237224	60	2.0	60	91	0	195	25	26	20	27	1.99
12240149--12240199	27	1.9	26	80	11	59	54	1	0	43	1.11
12240299--12240352	25	2.2	24	80	3	63	44	0	1	53	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12241587--12241628	17	2.5	17	92	0	66	47	0	0	52	1.00
12245514--12245675	80	2.0	80	91	0	261	27	8	42	20	1.82
12245707--12245761	24	2.3	24	84	9	69	9	3	5	81	0.95
12253768--12253806	21	1.9	19	90	10	60	66	0	7	25	1.18
12258501--12258525	2	12.5	2	100	0	50	52	0	0	48	1.00
12258525--12258563	2	19.5	2	100	0	78	51	0	48	0	1.00
12258766--12259265	252	2.0	254	95	3	898	29	17	18	34	1.94
12266867--12266902	19	1.9	19	88	5	56	36	0	0	63	0.94
12267079--12267133	17	3.2	17	77	15	60	30	1	1	65	1.13
12268287--12268335	3	16.3	3	86	0	71	40	0	0	59	0.98
12271736--12271821	28	3.1	28	98	0	163	29	10	4	55	1.53
12275034--12275074	20	2.0	21	86	9	59	75	2	14	7	1.12
12275125--12275236	58	1.9	59	91	8	185	33	9	7	49	1.63
12275271--12275300	11	2.6	11	94	5	51	80	0	3	16	0.85
12275318--12275362	4	12.5	4	95	4	55	73	0	0	26	0.84
12276113--12276137	13	1.9	13	100	0	50	72	4	0	24	1.02
12276151--12276312	8	21.7	7	67	18	55	61	1	4	32	1.25
12276087--12276262	78	2.3	77	76	9	187	62	1	4	31	1.25
12276092--12276290	17	11.6	17	66	21	71	61	1	4	33	1.24
12276180--12276290	24	4.8	24	83	8	108	58	0	3	36	1.22
12276095--12276290	54	3.5	55	76	12	154	61	1	4	33	1.24
12276204--12276290	41	2.1	41	79	10	97	59	0	4	35	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12276477--12276506	13	2.3	13	94	0	51	3	3	0	93	0.42
12276525--12276700	42	4.1	43	80	9	200	40	19	14	25	1.89
12277722--12277754	7	4.7	7	92	0	57	12	9	0	78	0.95
12277720--12277773	16	3.5	15	82	14	65	12	5	0	81	0.85
12277721--12277755	14	2.4	15	95	4	63	11	8	0	80	0.92
12277717--12277772	7	7.7	7	79	13	51	12	5	0	82	0.83
12277719--12277775	17	3.6	16	83	13	73	14	5	0	80	0.87
12288154--12288195	19	2.1	21	87	12	63	73	2	16	7	1.15
12288249--12288428	59	3.0	60	93	4	303	32	7	8	51	1.61
12288446--12288476	11	2.7	12	90	10	55	83	0	0	16	0.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77