genome.fa.s179.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  65  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12988633--12988701	27	2.4	29	81	11	90	17	4	0	78	0.91
12991431--12991469	20	2.0	20	90	10	62	30	2	0	66	1.05
13000386--13000443	21	2.8	20	76	10	62	6	13	3	75	1.13
13000708--13000747	20	2.0	21	90	5	64	22	12	22	42	1.87
13001262--13001307	19	2.4	19	86	10	67	13	2	2	82	0.85
13001399--13001456	22	2.6	22	87	12	84	77	3	8	10	1.10
13001399--13001466	22	3.0	22	81	8	75	75	4	8	11	1.18
13001491--13001531	22	1.9	21	85	14	57	60	2	0	36	1.10
13012851--13012900	25	2.0	25	84	0	64	30	34	10	26	1.89
13013149--13013189	6	6.7	6	83	5	55	17	0	0	82	0.66
13013146--13013183	13	3.0	13	85	14	53	18	0	0	81	0.69
13013149--13013190	19	2.2	20	91	4	68	16	0	0	83	0.65
13013166--13013235	20	3.3	20	78	13	61	8	10	1	80	0.98
13014027--13014063	5	7.8	5	85	11	51	13	0	0	86	0.57
13014141--13014171	16	1.9	16	93	0	53	87	0	3	9	0.66
13015135--13015177	2	21.5	2	100	0	86	51	0	48	0	1.00
13018910--13018959	25	2.0	25	100	0	100	44	16	4	36	1.66
13020488--13020546	18	3.3	19	79	15	63	23	33	13	28	1.93
13029491--13029547	25	2.2	25	81	9	60	54	5	0	40	1.23
13032484--13032623	34	4.0	34	80	7	140	45	3	4	47	1.40
13032531--13032597	19	3.8	18	69	16	59	47	2	4	44	1.38
13032484--13032623	68	2.0	71	80	6	162	45	3	4	47	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13032583--13032710	34	3.8	33	76	13	125	43	3	3	48	1.39
13032572--13032710	68	2.0	68	79	5	147	45	3	4	46	1.40
13034258--13034369	30	3.8	30	76	8	122	55	2	2	39	1.28
13036038--13036085	24	2.0	24	91	0	78	31	6	33	29	1.82
13043321--13043345	13	1.9	13	100	0	50	12	0	0	88	0.53
13048053--13048082	13	2.3	13	94	0	51	26	3	40	30	1.72
13057155--13057375	50	4.4	50	73	10	155	31	11	18	39	1.86
13057242--13057375	51	2.7	50	80	4	144	31	11	16	41	1.83
13057099--13057375	101	2.7	100	78	8	283	31	10	18	39	1.85
13059959--13060027	27	2.7	25	87	10	104	59	0	2	37	1.12
13082258--13082284	2	13.5	2	100	0	54	51	0	0	48	1.00
13085021--13085073	20	2.6	21	76	5	56	39	1	0	58	1.09
13085386--13085415	15	2.1	15	93	6	53	70	0	0	30	0.88
13086099--13086335	117	2.0	118	89	4	363	35	17	15	31	1.91
13091615--13091644	15	2.0	15	93	0	51	46	3	6	43	1.46
13092665--13092899	115	2.0	117	88	2	348	36	17	14	32	1.89
13096536--13096721	100	1.9	98	82	5	223	43	10	8	37	1.69
13096997--13097028	12	2.7	12	100	0	64	21	15	28	34	1.94
13101782--13101811	7	4.3	7	100	0	60	56	0	0	43	0.99
13107369--13107399	2	16.0	2	93	6	55	48	0	0	51	1.00
13108919--13108956	18	2.2	18	85	4	51	31	2	0	65	1.06
13112981--13113133	22	7.0	21	78	8	137	49	1	7	41	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13112936--13113117	43	4.2	43	75	12	126	48	1	7	42	1.41
13113188--13113249	31	2.0	31	100	0	124	45	0	12	41	1.42
13113295--13113345	22	2.4	21	83	9	59	41	3	11	43	1.60
13113817--13113861	21	2.2	20	84	4	54	46	13	8	31	1.74
13116181--13116244	20	3.3	20	76	6	60	68	4	9	17	1.34
13116181--13116240	19	3.3	18	73	17	52	68	5	8	18	1.34
13116293--13116386	38	2.4	39	92	5	156	23	52	12	11	1.72
13118636--13118670	11	3.1	11	92	8	61	88	11	0	0	0.51
13118637--13118696	19	2.9	20	78	12	68	80	15	1	3	0.93
13127443--13127526	43	1.9	44	97	2	161	23	14	22	39	1.91
13129429--13129458	7	4.3	7	100	0	60	56	0	0	43	0.99
13135022--13135054	2	17.0	2	93	6	59	48	0	0	51	1.00
13140597--13140795	22	9.2	21	74	12	138	49	1	8	41	1.41
13140665--13140789	21	5.8	21	79	11	94	51	1	6	40	1.37
13140637--13140789	43	3.6	42	75	14	145	50	1	6	41	1.36
13140850--13140911	31	2.0	31	100	0	124	45	0	12	41	1.42
13140956--13141006	22	2.4	21	83	9	59	41	3	11	43	1.60
13141355--13141506	21	7.1	21	62	11	58	50	6	7	36	1.56
13141479--13141523	21	2.2	20	84	4	54	46	13	8	31	1.74
13143866--13143924	18	3.2	18	79	11	66	72	10	5	11	1.25
13143845--13143898	18	2.8	19	75	8	56	64	5	9	20	1.42
13143883--13143923	17	2.4	17	87	0	55	75	12	4	7	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13143976--13144069	38	2.4	39	94	5	165	23	52	13	10	1.72
13145568--13145596	12	2.5	12	94	5	51	68	0	0	31	0.89
13146318--13146362	13	3.5	13	85	11	58	82	11	2	4	0.91
13146317--13146362	12	3.5	13	78	18	51	82	10	2	4	0.89
13146900--13146967	27	2.3	28	79	18	68	23	11	5	58	1.55
13152604--13152632	12	2.5	12	94	5	51	68	0	0	31	0.89
13155316--13155352	2	18.5	2	100	0	74	51	0	0	48	1.00
13156485--13156543	5	11.6	5	78	10	57	79	1	3	15	0.94
13156948--13156985	20	1.9	20	88	0	58	39	36	2	21	1.67
13157287--13157387	3	34.3	3	78	11	102	61	3	1	32	1.26
13161796--13161900	52	2.0	52	85	3	140	23	27	10	38	1.88
13162074--13162272	22	9.2	21	74	12	138	49	1	8	41	1.41
13162142--13162266	21	5.8	21	79	11	94	51	1	6	40	1.37
13162114--13162266	43	3.6	42	75	14	145	50	1	6	41	1.36
13162402--13162452	22	2.4	21	83	9	59	41	3	11	43	1.60
13162792--13162942	21	7.1	21	64	12	67	50	6	6	36	1.55
13162915--13162959	21	2.2	20	84	4	54	46	13	8	31	1.74
13165279--13165370	20	4.7	19	75	9	71	71	7	7	13	1.29
13165327--13165354	13	2.2	13	100	0	56	85	7	0	7	0.73
13166725--13166762	19	2.0	20	89	5	60	44	0	0	55	0.99
13169689--13169715	2	13.5	2	100	0	54	51	0	0	48	1.00
13170860--13170926	16	4.2	15	77	11	55	77	4	1	16	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13170860--13170929	26	2.9	24	73	19	65	77	4	1	17	1.01
13170892--13170930	21	2.0	20	85	10	53	76	0	2	20	0.90
13171329--13171366	20	1.9	20	88	0	58	39	36	2	21	1.67
13171671--13171765	3	32.3	3	77	12	90	61	4	2	32	1.27
13172568--13172607	20	2.0	20	90	9	64	25	30	25	20	1.99
13172677--13172725	16	2.7	19	78	15	59	32	0	6	61	1.21
13172689--13172866	63	2.8	60	80	14	162	27	2	4	65	1.26
13173369--13173414	19	2.4	19	85	0	65	26	28	19	26	1.99
13173740--13173872	28	4.5	27	71	21	83	19	3	2	75	1.05
13173825--13173872	9	5.1	9	82	7	60	14	4	0	81	0.84
13173827--13173902	19	4.3	19	72	14	63	17	6	0	76	0.99
13173825--13173902	28	2.9	27	76	14	90	16	6	0	76	0.98
13173805--13173896	34	2.6	35	86	6	116	15	6	0	78	0.95
13173905--13174323	59	7.0	59	83	7	479	46	8	12	32	1.71
13173913--13174323	119	3.4	117	84	6	513	45	8	12	33	1.72
13173906--13174328	181	2.3	179	88	4	602	46	8	12	32	1.72
13175769--13175822	25	2.2	25	90	6	83	46	0	9	44	1.35
13176745--13176792	3	16.0	3	100	0	96	66	0	0	33	0.92
13177632--13177663	2	16.0	2	100	0	64	50	0	0	50	1.00
13188545--13188614	35	2.0	35	88	0	104	34	12	18	34	1.89
13189339--13189393	21	2.6	21	81	16	69	65	5	5	23	1.35
13192400--13194824	187	13.0	187	83	3	2674	39	11	13	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13192870--13193160	61	4.7	61	68	14	166	41	12	12	34	1.80
13192399--13194824	559	4.3	556	83	3	2825	39	11	13	34	1.82
13199996--13200029	2	17.0	2	100	0	68	50	0	0	50	1.00
13206327--13206478	22	7.0	21	78	10	137	50	1	7	41	1.38
13206348--13206472	21	5.8	21	79	11	94	51	1	6	40	1.37
13206320--13206472	43	3.6	42	75	14	145	50	1	6	41	1.36
13206608--13206658	22	2.4	21	83	9	59	41	3	11	43	1.60
13207004--13207155	21	7.1	21	64	11	67	50	6	6	36	1.54
13207128--13207172	21	2.2	20	84	4	54	46	13	8	31	1.74
13209493--13209546	18	2.8	19	75	8	56	64	5	9	20	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77