genome.fa.s179.2.7.7.80.10.50.1000.75.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  75  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15125362--15125397	18	2.0	18	100	0	72	33	27	16	22	1.95
15137520--15137559	19	2.1	19	86	13	55	35	7	10	47	1.65
15140480--15140522	23	1.9	23	85	4	61	4	4	4	86	0.80
15142124--15142156	9	3.7	9	95	0	57	24	0	21	54	1.45
15151120--15151176	29	2.0	28	89	3	87	40	14	10	35	1.80
15153563--15153589	2	13.5	2	100	0	54	51	0	0	48	1.00
15156820--15156859	20	2.0	20	95	0	71	30	17	5	47	1.69
15157606--15157644	20	1.9	21	84	5	53	64	7	10	17	1.48
15160574--15160598	12	2.1	12	100	0	50	32	0	20	48	1.50
15167619--15167647	1	29.0	1	100	0	58	0	0	0	100	0.00
15191897--15191953	30	1.9	30	82	13	73	35	10	1	52	1.46
15191935--15192001	29	2.3	29	77	10	75	46	13	0	40	1.43
15194290--15194567	145	1.9	145	93	0	484	29	19	15	35	1.93
15199618--15199659	22	1.9	22	90	0	66	38	11	16	33	1.86
15201966--15202008	22	2.0	22	85	0	59	18	25	9	46	1.79
15204351--15204411	22	2.6	24	76	10	63	40	4	1	52	1.33
15206553--15206593	20	2.0	20	90	9	66	14	0	65	19	1.26
15206900--15206938	19	2.1	19	90	0	60	15	0	12	71	1.14
15208398--15208445	22	2.2	23	81	11	64	37	8	0	54	1.31
15208407--15208448	22	1.9	22	95	0	75	40	7	0	52	1.29
15213107--15213181	28	2.8	27	73	16	66	53	4	0	42	1.19
15213543--15213586	13	3.5	13	78	3	54	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15214174--15214252	14	5.1	14	74	19	68	45	2	8	43	1.48
15214425--15214456	2	16.0	2	100	0	64	50	0	0	50	1.00
15219215--15219258	20	2.1	22	87	8	65	65	2	0	31	1.05
15219655--15219696	20	2.2	20	91	4	68	2	7	16	73	1.15
15223728--15223920	96	2.0	96	95	0	350	35	21	18	25	1.95
15225665--15225769	42	2.6	38	79	13	93	46	0	4	48	1.23
15227949--15227978	16	1.9	15	93	6	51	46	0	0	53	1.00
15234188--15234227	2	20.0	2	100	0	80	50	0	0	50	1.00
15237869--15237904	2	18.0	2	88	0	54	44	0	5	50	1.25
15242613--15242687	37	2.0	37	97	0	141	36	22	20	21	1.96
15248658--15248700	22	1.9	23	85	4	61	25	0	4	69	1.07
15252067--15252116	26	1.9	26	84	8	66	12	18	18	52	1.75
15257455--15257501	25	1.9	25	95	4	87	46	0	0	53	1.00
15258209--15258261	20	2.7	20	80	13	65	49	7	1	41	1.42
15276744--15276773	14	2.1	14	93	0	51	13	10	6	70	1.34
15280227--15280397	93	1.8	93	93	2	299	24	20	27	27	1.99
15285051--15285076	2	13.0	2	100	0	52	50	0	50	0	1.00
15285683--15285709	10	2.7	10	100	0	54	59	0	7	33	1.25
15287376--15287427	25	2.0	25	81	3	59	59	5	0	34	1.21
15289440--15289484	19	2.4	19	80	0	54	60	6	4	28	1.42
15290086--15290118	16	2.1	16	94	0	57	66	0	0	33	0.92
15297219--15297266	18	2.8	18	87	9	66	33	0	2	64	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15297257--15297308	18	2.7	19	85	8	70	50	0	0	50	1.00
15298133--15298183	12	4.2	12	76	0	57	54	23	11	9	1.66
15298136--15298182	24	2.0	24	86	0	67	51	25	12	10	1.72
15301073--15301100	14	2.0	14	100	0	56	42	0	0	57	0.99
15301116--15301175	24	2.7	22	85	10	70	43	0	0	56	0.99
15309093--15309145	21	2.5	21	77	17	56	39	1	3	54	1.29
15310973--15311042	35	2.1	33	81	10	79	54	1	1	42	1.18
15311040--15311085	21	2.1	21	88	8	65	60	2	0	36	1.09
15315253--15315282	15	1.9	16	93	6	53	33	3	6	56	1.42
15318532--15318609	22	3.4	22	73	18	68	33	0	0	66	0.92
15318529--15318609	23	3.5	23	74	15	85	33	0	0	66	0.92
15321212--15321285	37	2.1	37	87	5	107	31	4	2	62	1.28
15321212--15321283	13	5.1	14	75	18	60	30	4	2	62	1.28
15324373--15324410	14	2.6	14	84	15	51	60	0	0	39	0.97
15339441--15339496	20	2.8	20	84	10	78	64	1	0	33	1.04
15344883--15345063	57	3.2	56	80	14	221	36	11	8	43	1.71
15347167--15347204	16	2.4	16	86	4	51	52	0	13	34	1.40
15347229--15347282	21	2.4	22	81	15	65	55	0	0	44	0.99
15347233--15347273	21	1.9	22	90	5	66	58	0	0	41	0.98
15347255--15347338	31	2.6	33	73	16	79	46	0	2	51	1.14
15349779--15349828	5	10.2	5	86	4	57	0	16	2	82	0.77
15349776--15349822	24	1.9	25	86	4	69	0	17	0	82	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15350456--15350490	16	2.2	16	89	0	52	11	20	5	62	1.48
15351885--15351928	22	2.0	22	95	0	79	31	11	13	43	1.80
15352309--15352343	18	1.9	18	88	0	52	22	14	25	37	1.92
15355240--15355283	22	2.0	22	95	0	79	31	11	13	43	1.80
15365478--15365522	17	2.7	16	80	10	54	68	0	2	28	1.01
15366768--15366840	32	2.3	32	80	0	83	43	12	9	34	1.75
15367235--15367263	14	2.0	15	93	6	51	68	17	0	13	1.20
15368606--15368638	13	2.4	14	95	5	59	42	0	0	57	0.98
15368822--15368887	18	3.5	18	71	15	53	59	0	1	39	1.07
15368985--15369069	38	2.2	39	91	6	138	43	2	4	49	1.36
15369135--15369185	26	2.0	26	84	7	68	43	1	3	50	1.31
15370378--15370725	160	2.2	159	91	1	545	25	14	23	35	1.93
15372878--15372951	32	2.2	32	88	4	103	47	2	4	45	1.35
15372878--15372951	34	2.2	33	90	4	114	47	2	4	45	1.35
15373012--15373147	32	4.2	32	73	10	116	44	5	4	46	1.45
15373036--15373158	64	2.0	63	80	6	142	47	6	4	42	1.48
15373205--15373237	15	2.3	15	89	5	50	72	0	15	12	1.12
15373902--15373969	30	2.3	30	84	5	84	48	0	11	39	1.40
15380863--15381005	74	1.9	74	92	0	241	38	17	18	25	1.92
15383871--15383906	2	18.0	2	100	0	72	50	0	0	50	1.00
15388068--15388122	21	2.8	19	75	8	56	56	0	0	43	0.99
15388069--15388136	24	3.0	23	81	10	77	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15388076--15388136	22	2.7	23	85	12	83	50	0	0	49	1.00
15388101--15388182	39	2.1	39	84	4	103	43	1	0	54	1.07
15388154--15388196	14	3.1	14	80	6	52	46	0	2	51	1.13
15388109--15388196	45	2.0	45	82	8	108	45	1	1	52	1.15
15389983--15390558	287	2.0	287	98	0	1107	29	14	20	35	1.92
15394682--15394715	6	5.7	6	85	0	50	47	2	2	47	1.32
15404771--15404806	14	2.5	14	90	4	54	55	2	8	33	1.44
15404860--15404904	22	2.0	22	95	0	81	26	8	11	53	1.65
15407373--15407492	60	2.0	60	90	0	186	34	23	11	30	1.90
15412466--15412505	16	2.4	16	87	4	53	57	0	42	0	0.98
15412752--15412793	12	3.5	12	75	12	50	7	2	11	78	1.04
15412881--15413110	117	2.0	118	84	7	308	48	4	10	36	1.57
15412881--15413115	58	4.0	59	81	7	257	47	5	10	37	1.60
15414127--15414232	54	1.9	55	81	5	126	24	18	9	47	1.78
15415666--15416001	134	2.5	133	79	5	347	39	18	12	29	1.87
15415666--15416049	134	2.9	135	79	5	343	39	18	12	29	1.88
15416448--15416479	13	2.4	14	89	10	57	21	6	6	65	1.38
15417405--15417439	2	17.5	2	100	0	70	51	0	0	48	1.00
15420438--15420464	12	2.2	12	100	0	54	18	44	7	29	1.77
15422880--15423048	76	2.2	76	90	2	259	35	11	19	33	1.88
15433098--15433217	50	2.6	45	79	15	145	29	7	5	57	1.50
15449970--15450490	275	1.9	275	98	0	1006	34	24	13	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15454901--15454941	20	2.0	20	86	9	57	29	0	2	68	1.03
15455078--15455115	16	2.2	19	86	13	55	63	5	5	26	1.37
15458155--15458179	2	12.5	2	100	0	50	52	0	0	48	1.00
15469428--15469469	20	2.0	21	86	4	59	71	0	0	28	0.86
15470490--15470556	27	2.2	30	75	22	77	46	0	0	53	1.00
15470505--15470558	27	2.0	27	96	0	99	50	0	0	50	1.00
15470768--15470807	7	5.9	7	88	2	55	17	32	35	15	1.91
15470757--15470801	21	2.1	21	83	0	54	24	28	35	11	1.90
15470767--15470810	14	3.2	14	87	3	63	22	31	31	13	1.93
15476055--15476121	34	2.0	33	82	8	82	47	1	0	50	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77