genome.fa.s179.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  2  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
178274--178322	23	2.1	23	92	0	80	30	0	0	69	0.89
178287--178328	15	2.8	15	89	7	59	28	0	0	71	0.86
178282--178332	11	4.5	11	80	4	57	31	0	0	68	0.90
179471--179534	23	2.9	23	77	13	71	65	0	3	31	1.08
184530--184591	2	31.0	2	93	0	79	41	0	8	50	1.32
188426--188496	29	2.4	31	86	6	94	38	5	0	56	1.23
194068--194094	1	27.0	1	100	0	54	100	0	0	0	0.00
196613--196663	3	17.3	3	95	4	95	33	0	0	66	0.92
196784--196830	17	2.8	17	75	15	53	78	14	0	6	0.93
196801--196834	13	2.6	13	90	9	52	82	14	0	2	0.79
196807--196847	8	5.5	8	85	8	52	78	12	0	9	0.98
200059--200090	2	16.0	2	100	0	64	50	50	0	0	1.00
201098--201137	19	2.2	19	86	13	57	22	5	0	72	1.04
202160--202203	18	2.4	18	84	0	52	68	0	2	29	1.02
202621--202840	122	1.8	122	83	0	296	36	13	10	40	1.78
208479--208736	128	2.0	128	100	0	516	33	15	17	33	1.91
221021--221057	18	1.9	18	89	10	56	62	0	0	37	0.96
221561--221599	19	2.1	19	90	4	62	51	0	0	48	1.00
228079--228563	144	3.3	143	82	4	535	43	10	12	33	1.77
229202--229506	106	2.9	105	79	7	323	36	13	16	33	1.88
229324--229680	189	1.9	188	83	5	461	37	13	15	34	1.86
229430--229587	83	1.9	83	82	2	201	37	12	15	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
229496--229694	105	1.9	105	89	4	312	36	14	16	33	1.88
229980--230022	18	2.4	18	84	0	50	53	9	13	23	1.69
231016--231173	82	1.9	82	81	7	187	31	10	18	38	1.86
232179--232231	21	2.5	21	79	11	56	1	20	3	73	1.08
234026--234209	3	58.3	3	73	19	69	27	1	3	67	1.14
234026--234211	12	14.8	12	72	17	80	26	1	3	68	1.13
234119--234189	4	16.5	4	73	13	52	26	0	4	69	1.07
234055--234252	104	1.9	107	82	11	257	27	1	5	66	1.19
234055--234257	107	1.9	104	83	8	255	26	0	5	66	1.19
235149--235264	14	8.0	13	67	16	52	19	5	2	72	1.16
235149--235187	14	2.9	14	81	11	55	17	0	2	79	0.84
235217--235277	31	2.0	31	87	6	88	14	9	0	75	1.04
235228--235276	15	3.2	15	77	13	55	14	10	0	75	1.04
235207--235277	37	1.9	36	86	8	99	14	11	0	74	1.07
235247--235288	22	1.9	22	85	9	59	14	11	2	71	1.24
235299--235689	58	6.7	58	87	4	536	44	7	12	35	1.70
243711--243789	8	9.1	9	80	15	78	78	0	11	10	0.97
243711--243789	17	4.6	18	83	9	94	78	0	11	10	0.97
244789--245050	41	6.4	40	86	1	337	22	15	22	38	1.92
244789--245050	82	3.2	82	92	2	420	22	15	22	38	1.92
244789--245057	123	2.2	123	87	3	371	23	15	22	38	1.92
245033--245080	23	2.1	23	100	0	96	35	12	18	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
244992--245115	65	1.9	64	93	1	212	27	14	20	37	1.91
245060--245190	42	3.1	42	87	5	167	24	17	21	36	1.94
245197--245273	1	77.0	1	73	0	64	87	11	0	1	0.62
245197--245264	8	8.5	8	84	10	86	86	11	0	1	0.63
245197--245273	10	7.6	10	81	12	95	87	11	0	1	0.62
245437--245597	3	51.3	3	70	21	57	27	1	3	67	1.13
245477--245608	31	4.1	32	68	25	91	30	0	3	65	1.16
246552--246593	13	3.3	13	83	6	59	19	0	2	78	0.86
246553--246596	17	2.6	17	89	3	63	18	0	2	79	0.83
246558--246596	4	9.5	4	88	5	60	20	0	2	76	0.90
246625--246682	18	3.0	18	76	16	62	12	8	1	77	1.06
246664--246705	22	1.9	22	85	9	59	11	14	2	71	1.24
246715--247223	59	8.7	59	88	5	716	44	6	13	35	1.69
246714--247223	58	8.7	58	88	6	744	44	6	13	35	1.69
246715--247223	117	4.3	118	87	8	731	44	6	13	35	1.69
246724--247223	176	2.8	172	91	3	793	43	6	13	36	1.70
251237--251277	3	13.7	3	100	0	82	34	0	0	65	0.93
255279--255622	170	2.0	170	95	0	625	41	12	10	34	1.78
255535--256307	145	5.3	144	80	5	837	42	10	13	33	1.78
258741--258774	2	16.5	2	87	6	50	50	0	2	47	1.16
272580--272636	14	3.5	15	82	17	62	24	1	12	61	1.40
272628--272672	23	2.0	21	87	8	63	22	4	11	62	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
272652--272683	17	1.9	16	93	6	55	28	6	9	56	1.55
277805--277845	9	4.8	8	83	16	55	82	2	0	14	0.76
277808--277842	18	1.9	18	94	0	61	80	2	0	17	0.84
278942--279244	41	7.4	39	81	7	277	40	16	18	25	1.90
278930--279448	82	6.3	81	76	9	365	41	17	16	24	1.89
279021--279427	41	9.9	41	77	6	261	40	18	15	25	1.90
280023--280081	22	2.7	21	84	5	64	33	18	8	38	1.81
281109--281142	12	2.7	13	86	9	52	5	11	0	82	0.83
287651--287694	13	3.3	14	81	9	56	77	2	2	18	0.98
287665--287701	18	2.1	18	95	5	67	75	0	0	24	0.80
293262--293302	21	2.0	21	90	4	66	80	0	17	2	0.82
297601--297724	64	2.0	63	83	1	158	40	6	10	42	1.65
297940--297968	2	14.5	2	100	0	58	51	0	0	48	1.00
301031--301057	2	13.5	2	100	0	54	48	51	0	0	1.00
307019--307207	94	2.0	94	87	2	272	18	14	8	58	1.61
307482--307888	204	2.0	204	96	0	751	34	17	16	31	1.92
318006--318033	3	9.3	3	100	0	56	67	0	0	32	0.91
324928--324971	10	4.5	10	81	16	56	29	0	2	68	1.02
326435--326656	106	2.1	106	88	1	336	45	7	3	43	1.48
329939--329968	15	2.0	15	93	0	51	63	0	0	36	0.95
338537--338563	5	5.4	5	100	0	54	22	55	0	22	1.44
348462--348680	83	2.7	81	80	11	209	51	2	3	42	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348525--348680	83	1.8	83	86	8	224	48	2	3	46	1.32
348535--348710	87	2.1	83	82	8	203	48	2	2	46	1.29
348720--348760	21	2.0	21	85	9	57	31	2	19	46	1.63
352500--352524	2	12.5	2	100	0	50	48	0	0	52	1.00
355554--355585	3	10.3	3	93	6	55	65	3	0	31	1.08
355606--355646	20	2.0	21	85	4	57	41	0	4	53	1.22
357055--357089	17	2.1	17	88	0	52	77	0	2	20	0.90
358275--358325	22	2.2	24	86	6	70	31	7	1	58	1.37
360975--360999	3	8.3	3	100	0	50	36	0	32	32	1.58
368339--368371	16	2.1	16	100	0	66	12	24	12	51	1.73
369127--369166	20	2.1	19	95	4	71	45	0	10	45	1.37
378936--378989	23	2.4	23	87	9	76	59	0	5	35	1.21
379059--379095	14	2.8	14	88	8	51	54	5	0	40	1.24
379125--379166	19	2.2	19	83	8	50	28	0	2	69	1.01
384192--384243	11	4.7	10	76	19	50	82	0	11	5	0.82
384206--384305	8	12.5	8	78	12	98	73	0	16	11	1.10
384193--384243	16	3.2	16	83	5	59	84	0	9	5	0.78
384215--384280	15	4.3	15	86	1	87	74	0	15	10	1.07
385074--385112	12	3.2	12	92	0	60	69	7	7	15	1.35
385201--385289	27	3.2	27	62	20	65	37	14	6	41	1.72
385144--385709	57	9.7	58	84	7	736	34	13	7	44	1.72
385144--385729	116	5.0	115	88	5	777	34	12	7	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
385744--385876	10	13.2	10	67	22	57	75	3	2	18	1.06
385738--385777	20	2.0	21	95	5	73	75	0	2	22	0.93
385759--385823	17	3.8	17	80	8	62	78	3	4	13	1.03
385751--385879	11	11.5	11	68	24	58	75	3	2	17	1.05
385786--385863	28	2.8	28	82	9	79	73	5	1	20	1.10
386719--386757	3	12.3	3	89	10	60	69	0	0	30	0.89
386822--386869	11	4.6	10	90	10	78	87	0	12	0	0.54
386822--386869	21	2.3	21	92	7	80	87	0	12	0	0.54
387060--387095	10	3.7	10	88	3	56	0	0	13	86	0.58
387125--387610	41	11.5	41	90	7	712	36	22	17	23	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77