genome.fa.s179.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  57  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11281805--11281846	17	2.3	18	84	15	52	47	0	2	50	1.14
11282754--11282815	24	2.6	25	82	10	67	46	6	0	46	1.28
11283194--11283243	25	2.0	25	100	0	100	20	24	12	44	1.85
11289906--11289940	13	2.7	13	86	0	52	80	0	17	2	0.84
11290626--11290713	45	2.0	44	86	6	126	42	2	0	55	1.12
11290689--11290743	25	2.2	25	90	3	85	52	0	0	47	1.00
11312565--11312615	20	2.5	20	81	9	59	49	0	7	43	1.32
11315651--11315679	3	9.7	3	100	0	58	68	0	0	31	0.89
11324321--11324357	2	18.5	2	100	0	74	51	0	0	48	1.00
11331846--11331884	6	6.3	6	86	13	53	66	0	0	33	0.92
11333386--11333416	15	2.1	15	93	0	53	38	0	6	54	1.26
11333575--11333610	2	17.5	2	88	5	54	47	2	2	47	1.31
11341098--11341123	11	2.4	11	100	0	52	46	7	7	38	1.61
11341783--11342487	353	2.0	352	96	0	1302	32	11	15	40	1.84
11343225--11343259	2	17.5	2	93	0	52	42	0	5	51	1.25
11343257--11343284	4	7.0	4	100	0	56	25	0	25	50	1.50
11345769--11346260	247	2.0	246	89	2	747	22	22	15	39	1.91
11352866--11354389	801	1.9	799	83	3	2008	37	12	12	37	1.81
11358546--11358674	65	2.0	65	87	3	188	33	13	14	38	1.85
11358565--11358701	65	2.1	65	81	10	156	36	13	15	34	1.87
11365337--11365365	14	2.0	15	93	6	51	65	6	0	27	1.18
11382296--11382333	2	19.0	2	100	0	76	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11381996--11382670	361	1.9	357	93	1	1163	48	12	15	23	1.80
11383555--11383585	13	2.3	14	94	5	55	38	0	0	61	0.96
11383593--11383629	19	2.1	19	85	10	51	64	2	0	32	1.07
11384992--11385031	12	3.2	13	74	25	50	25	25	0	50	1.50
11384983--11385031	24	2.0	24	92	0	80	22	24	0	53	1.47
11385136--11385163	2	14.0	2	100	0	56	50	0	0	50	1.00
11392643--11392707	26	2.6	26	78	9	66	10	16	0	72	1.12
11394222--11394246	2	12.5	2	100	0	50	48	0	0	52	1.00
11396677--11396707	6	5.2	6	100	0	62	32	16	0	51	1.44
11404293--11404499	105	2.0	105	97	0	387	40	21	12	25	1.88
11411109--11411160	20	2.6	21	76	8	56	40	0	0	59	0.97
11413198--11413235	15	2.5	15	86	4	58	15	5	0	78	0.91
11414127--11414180	23	2.3	24	75	9	58	38	1	3	55	1.28
11414114--11414184	32	2.2	32	77	5	81	46	1	2	49	1.25
11414144--11414274	30	4.4	29	79	12	142	41	2	2	54	1.26
11414116--11414274	31	5.3	30	77	10	155	41	2	2	53	1.28
11414116--11414274	61	2.7	56	80	10	158	41	2	2	53	1.28
11414388--11414457	29	2.4	29	85	2	86	51	0	5	42	1.25
11417706--11417730	11	2.3	11	100	0	50	36	12	16	36	1.85
11417842--11417876	18	1.9	18	94	0	61	22	2	0	74	0.95
11426707--11426816	53	2.1	52	83	8	134	43	10	20	25	1.83
11435138--11435173	12	3.1	11	88	11	54	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11435173--11435231	30	2.0	30	86	0	82	45	0	1	52	1.10
11439505--11439548	16	2.8	16	82	6	54	50	2	0	47	1.13
11439556--11439613	30	1.9	30	86	6	82	53	1	0	44	1.10
11439815--11439860	16	2.9	16	87	3	58	30	2	0	67	1.03
11442974--11443079	54	1.9	55	83	7	135	50	2	0	45	1.22
11443051--11443143	41	2.2	42	79	9	109	54	1	3	40	1.23
11451418--11451453	2	18.0	2	94	0	63	47	0	0	52	1.00
11460608--11460712	53	2.0	53	96	0	192	28	8	18	44	1.79
11460893--11460923	16	1.9	16	100	0	62	48	6	6	38	1.55
11465757--11465832	27	2.9	26	76	5	82	28	5	7	57	1.49
11465913--11465978	14	5.2	12	73	12	53	75	4	4	15	1.12
11466874--11466970	3	34.3	3	73	12	80	63	0	6	29	1.18
11466888--11466965	22	3.6	21	78	11	70	60	0	7	32	1.25
11466880--11466970	25	3.6	25	79	8	87	62	0	6	30	1.20
11466923--11467046	5	23.2	5	72	16	65	55	4	4	35	1.40
11466922--11467046	26	4.7	26	69	17	80	56	4	4	35	1.39
11469990--11470018	14	2.0	15	93	6	51	6	44	0	48	1.29
11470523--11470573	23	2.1	24	85	7	68	29	5	0	64	1.17
11470571--11470604	12	2.8	12	86	4	50	64	0	2	32	1.08
11471376--11471419	22	2.1	21	87	8	63	31	13	0	54	1.39
11472334--11472380	23	2.0	23	88	8	69	46	4	14	34	1.64
11474796--11474906	52	2.1	52	93	0	186	27	24	7	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11476998--11477062	18	3.6	17	76	10	58	33	1	6	58	1.32
11477012--11477062	19	2.8	19	74	14	54	35	1	3	58	1.28
11477200--11477235	19	1.9	19	88	5	56	22	0	8	69	1.15
11478302--11478527	110	2.0	111	96	0	418	42	4	20	31	1.73
11478946--11479022	38	2.1	37	87	2	109	41	16	7	33	1.78
11481497--11481527	3	10.3	3	100	0	62	32	0	0	67	0.91
11481578--11481614	3	12.3	3	100	0	74	32	0	0	67	0.91
11482063--11482113	10	4.9	10	81	9	57	11	1	17	68	1.29
11482064--11482112	11	4.5	11	82	2	55	10	2	16	71	1.22
11482058--11482113	21	2.6	21	81	10	60	14	1	19	64	1.38
11482142--11482166	13	1.9	13	100	0	50	16	0	24	60	1.36
11482306--11482355	10	4.9	10	85	4	64	12	2	18	68	1.30
11482384--11482408	13	1.9	13	100	0	50	16	0	24	60	1.36
11494017--11494492	118	4.1	118	79	6	468	18	22	14	44	1.86
11494010--11494492	236	2.1	233	81	4	551	18	22	14	44	1.86
11494970--11495012	15	2.8	16	82	10	63	4	13	0	81	0.84
11495812--11495849	20	1.9	20	84	10	51	18	0	5	76	0.97
11498217--11498291	3	25.0	3	82	10	91	29	1	2	66	1.13
11498432--11498466	3	11.7	3	100	0	70	31	0	0	68	0.90
11498432--11498474	9	4.7	10	94	5	58	30	0	0	69	0.88
11498637--11498661	10	2.5	10	100	0	50	68	0	0	32	0.90
11505643--11505709	26	2.6	26	79	6	66	64	4	4	26	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11505952--11506029	21	3.8	21	72	14	72	34	1	5	58	1.28
11505922--11506039	42	2.8	40	73	10	103	36	0	4	58	1.23
11506071--11506114	18	2.4	19	84	3	54	22	2	9	65	1.32
11506182--11506220	17	2.2	18	86	4	53	30	0	5	64	1.15
11509229--11509279	27	1.9	27	96	4	95	35	7	11	45	1.70
11509236--11509289	27	2.0	27	85	3	74	29	12	11	46	1.77
11514690--11514734	22	2.1	21	88	8	65	33	13	0	53	1.40
11515678--11515723	23	2.0	23	95	0	83	45	4	15	34	1.66
11516007--11516053	16	2.8	17	80	9	60	72	0	0	27	0.85
11516672--11516834	80	2.0	80	83	0	200	36	13	22	27	1.92
11527158--11527206	20	2.4	19	78	21	55	16	2	26	55	1.52
11527354--11527405	3	17.7	3	82	11	63	28	1	1	67	1.12
11528856--11528907	14	3.6	14	78	16	52	28	1	1	67	1.12
11528864--11528908	17	2.7	16	86	10	63	26	2	2	68	1.12
11528867--11528913	17	2.6	18	86	10	60	29	2	2	65	1.15
11535941--11536026	20	4.2	20	70	15	61	65	1	1	32	1.08
11536206--11536262	19	2.9	20	85	12	66	49	5	5	40	1.48
11536206--11536262	20	2.9	19	82	12	62	49	5	5	40	1.48
11536552--11536590	17	2.3	17	90	0	60	35	0	0	64	0.94
11541715--11541813	50	2.0	51	84	6	130	36	13	11	39	1.80
11542374--11542402	3	9.7	3	100	0	58	31	0	0	68	0.89
11542527--11542585	12	4.9	12	78	10	50	72	11	1	13	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11542525--11542585	25	2.5	23	79	10	68	73	11	1	13	1.16
11546420--11546765	118	2.9	120	90	6	531	37	12	6	43	1.69
11546422--11546767	59	5.7	59	80	7	390	37	12	6	43	1.68
11546814--11546847	17	2.1	16	88	5	50	76	2	2	17	1.04
11547166--11547202	19	1.9	19	88	0	56	2	24	13	59	1.47
11547408--11547472	27	2.4	28	82	17	84	70	0	7	21	1.11
11547382--11547503	27	4.5	27	70	15	74	67	0	5	26	1.19
11547424--11547490	23	2.7	24	73	19	66	70	0	5	23	1.09
11547371--11547495	17	7.6	16	73	12	85	69	0	6	23	1.16
11547799--11548334	83	6.5	82	83	3	540	38	20	15	26	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77