genome.fa.s179.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  36  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7323875--7323911	15	2.3	17	86	13	60	89	0	0	10	0.49
7326342--7326396	8	6.6	8	83	8	74	78	12	0	9	0.97
7326336--7326412	26	3.1	24	80	20	88	80	11	0	7	0.90
7326341--7326412	34	2.2	32	92	7	126	80	11	0	8	0.90
7326336--7326412	8	9.2	8	76	17	50	80	11	0	7	0.90
7326448--7326496	16	3.0	16	78	3	53	18	53	8	20	1.70
7327955--7327987	10	3.3	10	91	8	50	72	0	0	27	0.85
7332417--7334201	890	2.0	889	97	0	3354	36	19	15	28	1.92
7340780--7341470	147	4.7	150	83	5	792	27	10	21	40	1.86
7340780--7341458	48	13.9	50	80	7	732	26	10	21	40	1.86
7341445--7341494	24	2.1	24	100	0	100	42	8	10	40	1.68
7341400--7341542	72	2.0	72	91	2	234	37	9	14	38	1.80
7341471--7341606	48	2.8	48	89	3	191	31	11	16	39	1.85
7341471--7341623	48	3.1	47	84	7	182	30	11	18	39	1.86
7341473--7341656	51	3.7	52	82	8	156	30	11	17	39	1.86
7342002--7342043	18	2.3	18	87	0	57	78	7	4	9	1.08
7342108--7342151	16	2.7	16	89	3	61	18	47	6	27	1.73
7347296--7347333	19	2.0	20	85	10	53	31	15	7	44	1.75
7352111--7352145	13	2.8	13	95	4	63	22	25	20	31	1.98
7353604--7357035	795	4.3	799	84	4	4150	33	15	12	38	1.85
7353604--7357035	801	4.3	797	84	4	4180	33	15	12	38	1.85
7359704--7359734	8	3.9	8	91	0	53	0	12	0	87	0.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7359786--7359827	3	13.7	3	85	14	59	33	0	0	66	0.92
7360238--7360291	25	2.2	25	86	6	74	38	3	18	38	1.69
7360300--7360367	31	2.2	31	82	10	77	27	22	22	27	1.99
7360494--7360531	19	2.1	18	85	9	51	52	0	47	0	1.00
7360856--7360921	5	13.4	5	73	17	50	15	4	1	78	0.98
7360856--7360931	11	6.4	11	78	14	71	15	5	1	77	1.01
7360863--7360931	13	5.6	13	76	10	65	15	4	1	78	0.98
7360866--7360931	19	3.5	19	78	12	66	16	4	1	77	1.01
7360966--7361053	27	3.2	27	61	17	63	39	5	17	37	1.73
7360948--7361651	58	11.9	58	81	9	773	44	8	12	34	1.73
7360949--7361651	301	2.4	294	86	7	962	44	8	12	34	1.73
7372304--7373035	49	14.9	50	79	7	671	27	10	20	40	1.86
7372304--7373029	148	4.9	149	83	4	786	26	10	20	41	1.86
7372304--7373047	97	7.6	97	78	7	641	27	10	20	40	1.86
7372627--7372657	16	1.9	16	93	0	53	29	6	19	45	1.75
7373022--7373071	24	2.1	24	100	0	100	42	8	10	40	1.68
7373048--7373178	51	2.7	49	81	8	142	30	9	19	39	1.85
7372893--7373202	170	1.8	170	86	6	457	29	10	21	39	1.86
7373060--7373202	47	3.0	47	81	5	160	28	11	21	38	1.88
7373060--7373252	47	3.9	47	77	11	149	29	10	21	38	1.88
7373589--7373613	10	2.5	10	100	0	50	84	0	16	0	0.63
7373609--7373642	15	2.3	15	90	5	52	76	11	2	8	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7373693--7373723	16	1.9	16	93	0	53	16	48	9	25	1.76
7374780--7374823	19	2.2	21	84	15	58	70	4	0	25	1.06
7375883--7379933	800	5.1	790	79	9	4028	34	15	12	37	1.86
7396153--7396207	24	2.3	24	77	0	65	20	18	27	34	1.95
7396819--7396875	30	1.9	30	92	0	96	8	5	29	56	1.52
7402072--7402115	17	2.5	18	88	3	63	47	0	15	36	1.46
7416891--7416966	31	2.5	30	74	18	75	32	1	10	55	1.42
7423268--7423306	12	3.2	12	88	0	60	43	2	0	53	1.14
7429544--7429574	14	2.2	14	94	0	53	54	3	0	41	1.16
7430353--7430430	9	8.7	9	76	6	52	29	0	2	67	1.03
7430388--7430430	19	2.3	18	84	7	59	32	0	0	67	0.91
7430351--7430433	28	3.1	27	82	6	98	33	0	2	63	1.07
7430910--7430987	16	4.8	16	78	7	68	41	2	6	50	1.42
7431100--7431157	20	2.8	20	86	2	71	46	3	1	48	1.29
7433049--7433082	16	2.1	16	94	0	59	29	0	26	44	1.55
7433489--7433541	19	2.8	19	76	21	58	69	3	1	24	1.15
7434537--7434580	7	5.9	7	86	7	52	31	0	2	65	1.05
7434583--7434625	12	3.6	12	87	0	68	46	2	0	51	1.13
7435149--7435519	133	2.8	132	80	6	433	44	13	19	22	1.85
7437278--7437332	24	2.3	24	77	0	65	20	18	27	34	1.95
7441191--7441231	17	2.4	18	80	19	52	34	7	2	56	1.40
7442339--7442371	17	1.9	17	93	0	57	48	0	15	36	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7443396--7443439	21	2.1	21	83	8	54	75	2	2	20	1.03
7446178--7446217	15	2.7	15	88	7	55	40	0	0	60	0.97
7449976--7450006	13	2.4	13	94	0	53	25	9	0	64	1.24
7449959--7450006	26	2.0	24	84	12	62	31	8	0	60	1.26
7453439--7453464	3	8.7	3	100	0	52	69	0	0	30	0.89
7455119--7455212	30	3.2	30	81	11	97	37	5	3	54	1.39
7455162--7455236	30	2.5	30	79	12	82	41	9	2	46	1.50
7456209--7456243	17	2.0	18	88	5	54	20	2	2	74	1.08
7456897--7456969	19	3.4	22	78	15	73	75	10	1	12	1.11
7456922--7456959	17	2.2	17	86	9	51	73	10	0	15	1.09
7470229--7470747	47	11.0	48	83	5	612	27	13	22	36	1.92
7470231--7470747	95	5.5	93	84	5	603	27	13	22	36	1.92
7471085--7471141	29	2.0	29	82	0	69	19	49	5	26	1.69
7471408--7471452	18	2.5	17	85	7	54	68	6	8	15	1.36
7472314--7472360	17	2.8	16	78	15	51	68	0	2	29	1.02
7473587--7473625	17	2.3	17	86	8	53	84	0	12	2	0.72
7474044--7474127	34	2.5	34	71	21	79	17	17	9	54	1.69
7474175--7474400	34	6.8	33	69	18	103	24	19	9	47	1.78
7476813--7476863	10	4.8	10	83	9	57	80	0	17	1	0.81
7476813--7476863	21	2.4	22	83	3	68	80	0	17	1	0.81
7476814--7476873	27	2.2	26	83	13	77	76	1	18	3	1.00
7477244--7477302	31	1.9	31	85	0	82	40	1	23	33	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7477412--7477529	63	2.0	61	81	8	143	33	12	17	36	1.88
7479022--7479065	14	3.2	14	90	3	63	45	2	2	50	1.27
7479190--7479247	15	3.6	16	71	19	57	74	0	3	22	0.97
7479388--7479430	5	8.8	5	80	14	54	79	2	16	2	0.95
7479388--7479431	15	2.9	15	87	9	63	77	2	15	4	1.04
7480438--7480568	15	8.2	16	76	10	126	49	29	1	19	1.57
7480471--7480568	31	3.1	31	78	7	92	50	29	1	19	1.55
7480439--7480627	47	4.1	45	75	13	161	47	29	2	20	1.62
7480446--7480523	7	10.0	8	73	14	65	50	28	2	19	1.61
7480439--7480567	32	4.1	31	81	6	134	48	30	1	19	1.58
7480653--7480693	16	2.8	14	85	7	55	56	24	0	19	1.42
7480581--7480723	30	4.8	30	71	14	84	49	27	1	21	1.58
7480644--7480751	15	7.3	15	68	13	53	48	25	2	24	1.65
7482588--7482694	53	2.0	53	100	0	214	31	16	27	24	1.96
7492178--7492218	12	3.7	12	75	18	52	82	4	0	12	0.81
7492179--7492218	21	1.9	21	100	0	80	82	5	0	12	0.82
7493399--7493467	34	2.0	34	83	8	86	13	13	18	55	1.69
7493289--7493577	134	2.1	135	88	1	429	21	16	13	47	1.82
7493409--7493760	181	2.0	180	87	2	519	21	15	14	49	1.79
7493581--7493882	136	2.2	137	86	1	428	22	16	13	48	1.80
7493834--7493939	35	3.1	34	68	11	99	28	16	12	43	1.83
7493816--7493973	68	2.3	69	92	1	255	25	17	12	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7493675--7494108	204	2.1	203	84	2	548	22	16	13	46	1.82
7493885--7494528	135	4.8	135	82	5	740	22	16	13	47	1.81
7493581--7494206	339	1.9	336	88	1	948	22	16	13	46	1.82
7493885--7494528	267	2.4	267	83	4	764	22	16	13	47	1.81
7496289--7496320	17	1.9	17	93	6	57	50	34	0	15	1.45
7496299--7496365	23	2.9	23	80	4	73	44	31	1	22	1.62
7496345--7496387	15	3.0	14	83	6	59	46	37	0	16	1.47
7496346--7496387	14	2.9	15	85	7	59	47	38	0	14	1.44
7496453--7496497	23	2.0	23	86	0	63	44	17	2	35	1.62
7499221--7499263	23	1.9	23	81	13	54	23	9	46	20	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77