genome.fa.s179.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  17  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3050405--3050838	126	3.5	123	74	8	376	35	13	16	35	1.88
3050667--3050714	22	2.2	22	88	7	71	41	14	12	31	1.83
3050807--3050887	42	1.9	42	92	0	135	38	13	14	33	1.86
3051496--3051692	44	4.6	43	79	5	150	30	9	22	37	1.86
3051558--3051692	44	3.1	44	84	3	175	28	10	21	39	1.86
3051683--3052013	86	3.9	86	80	0	322	35	12	18	33	1.88
3054191--3054253	14	4.6	14	80	11	76	6	4	7	80	1.00
3056535--3056588	25	2.1	26	83	10	67	44	7	12	35	1.71
3056709--3056895	56	3.5	54	80	9	206	50	10	12	26	1.72
3060839--3060923	9	9.2	10	73	15	51	72	0	18	8	1.08
3060844--3060911	18	3.7	19	75	20	72	77	0	14	7	0.96
3060844--3060923	19	4.4	18	71	16	58	76	0	16	7	1.00
3062225--3062304	21	3.9	21	75	9	83	43	10	12	33	1.76
3062263--3062489	79	2.9	79	89	2	339	39	11	14	34	1.82
3062336--3062381	21	2.2	21	92	3	76	34	13	13	39	1.83
3062412--3062462	21	2.5	21	90	3	77	43	9	11	35	1.75
3063013--3063055	8	5.5	8	83	5	61	81	0	4	13	0.84
3063017--3063055	15	2.5	16	91	4	62	82	0	5	12	0.83
3064099--3064252	53	2.8	54	93	2	247	50	11	14	22	1.75
3069050--3069085	3	12.0	3	88	11	56	33	0	0	66	0.92
3069050--3069076	14	1.9	14	100	0	54	33	0	0	66	0.92
3069050--3069085	17	2.2	16	95	5	63	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3069717--3069751	17	1.9	19	88	11	56	42	8	2	45	1.49
3072088--3072474	143	2.7	141	83	5	472	41	9	14	34	1.79
3076534--3076564	3	10.7	3	93	6	55	70	0	0	29	0.87
3076529--3076566	12	3.3	11	89	10	58	73	0	0	26	0.83
3077154--3077190	17	2.2	17	90	4	58	59	2	0	37	1.12
3077241--3077404	18	8.8	18	75	8	123	38	1	4	54	1.32
3077248--3077567	10	33.2	9	70	14	133	36	1	6	55	1.36
3077241--3077412	9	18.8	8	70	21	74	37	1	4	55	1.31
3077248--3077646	20	19.8	19	68	18	152	35	2	7	55	1.39
3077242--3077646	10	41.4	10	69	17	90	35	1	7	55	1.39
3077581--3077653	21	3.5	20	68	20	53	34	2	5	57	1.36
3078050--3078129	34	2.4	34	80	0	88	32	12	16	38	1.86
3080940--3081303	63	5.8	60	70	14	191	35	12	12	39	1.81
3080947--3081287	125	2.7	121	73	16	293	34	12	11	40	1.80
3081848--3082015	62	2.7	62	79	10	173	38	13	12	35	1.83
3082030--3082171	62	2.2	64	80	4	155	34	11	12	40	1.80
3083855--3084481	314	2.0	314	85	3	850	34	9	15	40	1.80
3084822--3084893	21	3.4	22	70	11	60	34	9	9	45	1.70
3098965--3098995	13	2.4	13	94	0	53	54	19	6	19	1.65
3099053--3099106	19	2.8	20	75	16	67	50	18	7	24	1.72
3101464--3101577	40	2.8	39	89	2	165	25	27	11	35	1.90
3112855--3112895	21	2.0	21	85	0	55	19	7	9	63	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3119528--3119572	19	2.5	19	82	17	60	17	0	35	46	1.49
3122811--3122907	49	2.0	49	81	0	113	27	15	11	45	1.80
3122930--3123117	92	2.1	91	87	3	245	39	35	3	21	1.71
3123148--3123201	6	8.8	6	80	17	58	51	35	0	12	1.40
3123148--3123201	13	4.4	12	78	19	58	51	35	0	12	1.40
3123148--3123249	18	5.6	18	78	8	107	47	34	0	17	1.55
3123146--3123246	37	2.7	37	80	8	125	45	35	0	17	1.56
3123238--3123293	28	2.0	29	92	3	96	41	41	3	14	1.63
3123842--3123869	13	2.2	13	100	0	56	21	0	17	60	1.36
3123935--3123976	17	2.6	16	84	3	57	38	0	7	54	1.28
3127484--3127537	23	2.3	23	77	0	63	46	9	0	44	1.35
3128455--3128506	21	2.5	21	80	0	59	55	3	5	34	1.42
3128748--3128787	21	2.0	20	90	5	62	52	2	5	40	1.37
3128867--3128901	2	18.0	2	88	5	54	48	0	0	51	1.00
3134469--3134512	22	2.0	22	95	0	79	43	13	11	31	1.80
3137949--3137983	18	1.9	18	88	0	52	37	25	14	22	1.92
3138159--3138217	25	2.4	25	86	5	77	40	18	27	13	1.88
3138364--3138407	22	2.0	22	95	0	79	43	13	11	31	1.80
3142907--3142945	19	2.1	19	85	0	51	48	20	2	28	1.62
3143494--3143605	53	2.1	52	88	6	163	44	8	21	25	1.81
3144778--3144813	2	18.0	2	100	0	72	50	0	50	0	1.00
3146388--3146444	24	2.2	27	84	12	75	40	1	1	56	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3146387--3146532	30	5.0	29	74	19	126	41	4	1	53	1.28
3146390--3146529	60	2.4	59	80	13	157	41	4	1	52	1.30
3154742--3154804	21	3.1	21	73	13	60	47	28	0	23	1.52
3154876--3154920	8	6.1	8	82	17	62	51	35	0	13	1.41
3154775--3154912	7	20.3	7	75	8	115	47	31	0	21	1.51
3155970--3156000	16	1.9	16	100	0	62	77	0	9	12	0.99
3155968--3156098	65	2.1	60	79	9	138	52	5	9	32	1.56
3156122--3156176	25	2.2	25	90	6	85	32	5	3	58	1.38
3157001--3157075	38	2.0	38	83	0	96	40	20	6	33	1.78
3157043--3157107	34	1.9	34	84	6	87	33	20	9	36	1.84
3157043--3157152	37	3.1	37	79	8	95	31	18	11	38	1.87
3163058--3163088	2	15.5	2	100	0	62	48	0	0	51	1.00
3179895--3180198	160	1.9	160	82	9	379	46	9	13	30	1.76
3183417--3183455	18	2.1	19	86	13	55	7	17	0	74	1.05
3187269--3187400	55	2.4	53	79	12	131	28	13	9	47	1.75
3187305--3187413	55	2.0	55	88	0	164	31	12	13	42	1.82
3195441--3195592	65	2.4	62	79	8	144	34	11	15	38	1.84
3195472--3195617	63	2.3	64	83	3	179	36	13	11	39	1.80
3195264--3195693	190	2.3	186	79	8	460	36	14	12	36	1.84
3201250--3201290	21	2.0	20	95	4	73	4	9	4	80	1.00
3202124--3202165	12	3.4	12	86	3	57	9	2	7	80	0.97
3202124--3202159	6	5.8	6	90	3	54	11	2	2	83	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3202536--3203488	235	4.0	232	80	6	774	32	9	11	45	1.74
3205022--3205287	133	2.0	133	96	0	496	28	14	19	37	1.91
3211337--3211369	16	2.1	16	94	0	57	54	0	18	27	1.44
3211563--3211600	18	2.1	18	90	0	58	31	5	21	42	1.75
3216328--3216386	24	2.5	24	94	0	100	42	18	27	11	1.85
3217894--3217921	14	2.0	14	100	0	56	28	7	7	57	1.52
3226622--3226783	13	12.4	13	75	14	102	19	5	23	51	1.67
3226615--3226791	66	2.7	64	84	6	212	20	5	22	52	1.65
3226708--3226791	40	2.1	40	86	4	116	20	3	21	54	1.59
3226641--3226789	13	11.3	13	78	8	131	20	4	22	52	1.65
3231259--3231305	15	3.3	15	85	11	71	29	6	10	53	1.60
3239706--3239745	18	2.2	18	90	0	62	15	0	32	52	1.43
3239711--3239751	18	2.5	15	79	20	55	9	0	34	56	1.32
3239713--3239748	18	2.0	18	100	0	72	11	0	33	55	1.35
3239911--3239963	22	2.4	22	93	6	90	43	7	9	39	1.65
3249994--3250327	166	2.0	167	96	0	616	29	24	11	34	1.90
3250659--3250728	25	2.8	24	74	10	59	10	20	1	68	1.26
3258789--3258850	32	2.0	31	81	6	72	58	6	12	22	1.58
3263912--3263950	21	1.9	20	84	5	51	48	5	2	43	1.38
3263919--3264365	228	2.0	228	81	7	541	36	12	6	43	1.70
3266332--3266399	35	1.9	35	90	0	109	50	14	10	25	1.74
3266723--3266751	2	14.5	2	100	0	58	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3267175--3267396	23	10.0	23	75	16	191	57	0	0	40	1.11
3267199--3267411	16	14.3	15	66	24	71	58	0	0	40	1.08
3267173--3267421	18	13.9	18	65	26	79	57	0	0	40	1.10
3267199--3267350	30	4.7	32	70	19	100	56	0	0	42	1.09
3267270--3267411	3	48.7	3	70	22	54	60	0	1	38	1.06
3267223--3267402	23	8.0	24	79	13	197	58	0	1	40	1.05
3267488--3267543	17	3.8	16	67	28	52	51	1	0	46	1.11
3267488--3267551	26	2.5	26	90	5	96	50	1	0	48	1.10
3267486--3267551	9	7.7	9	70	21	52	48	1	0	50	1.10
3267860--3267905	21	2.2	20	82	14	58	65	0	0	34	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77