genome.fa.s179.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  29  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5679681--5679763	34	2.5	34	82	2	105	53	6	1	39	1.34
5679730--5679785	17	3.1	19	80	10	64	50	12	0	37	1.41
5680711--5680787	39	2.0	39	85	10	104	35	35	5	24	1.78
5688900--5688941	21	2.0	20	86	4	57	54	7	0	38	1.28
5688907--5688948	20	2.0	21	86	4	59	59	2	0	38	1.10
5689681--5689716	15	2.3	16	95	4	65	19	66	0	13	1.24
5689694--5689769	20	3.8	19	74	10	73	19	67	0	13	1.23
5690184--5690266	43	1.9	43	90	4	132	13	20	21	44	1.85
5699895--5699925	16	1.9	16	93	0	53	29	19	9	41	1.83
5706602--5706666	29	2.2	30	83	2	78	50	3	6	40	1.43
5710622--5710651	2	15.5	2	93	6	53	50	0	0	50	1.00
5710956--5711005	22	2.2	22	82	3	55	50	2	4	44	1.32
5712372--5712456	22	3.9	23	76	11	81	48	0	11	40	1.40
5712430--5712550	65	1.9	64	81	5	145	45	6	11	36	1.67
5712526--5712581	21	2.7	20	81	15	69	50	8	5	35	1.57
5712687--5712788	22	4.6	22	75	13	93	52	5	6	34	1.52
5712687--5712788	44	2.3	43	81	6	107	52	5	6	34	1.52
5712924--5713051	22	5.8	21	76	12	114	49	7	5	38	1.53
5712924--5713036	44	2.6	44	85	2	129	49	7	6	37	1.55
5718343--5718369	5	5.4	5	100	0	54	40	0	0	59	0.98
5728020--5728202	92	2.0	92	94	0	321	24	26	13	34	1.93
5732194--5732251	14	4.0	14	78	8	62	13	6	1	77	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5732193--5732243	15	3.3	15	73	15	50	11	5	1	80	0.97
5732581--5732610	15	2.0	15	100	0	60	53	13	6	26	1.64
5734049--5734073	3	8.3	3	100	0	50	36	0	0	64	0.94
5735311--5735342	2	16.0	2	100	0	64	50	0	0	50	1.00
5748569--5748671	52	2.0	51	83	9	129	17	1	6	73	1.14
5748575--5748671	51	1.9	52	84	12	132	17	1	7	74	1.10
5748620--5748651	15	2.2	15	94	5	57	12	0	9	78	0.97
5757038--5757087	18	2.9	18	85	8	68	36	12	12	40	1.79
5757038--5757089	17	3.0	18	86	8	72	34	11	13	40	1.81
5757160--5757233	17	4.4	17	70	11	53	39	13	16	31	1.87
5757417--5757470	17	3.2	17	81	0	72	37	14	11	37	1.82
5757404--5757480	34	2.3	34	81	4	102	38	11	10	38	1.76
5757520--5757586	35	1.9	34	84	3	89	38	13	16	31	1.87
5757531--5757588	17	3.4	17	78	2	62	43	13	15	27	1.85
5757878--5757928	25	2.0	25	84	0	66	58	7	0	33	1.27
5757857--5758016	22	7.1	22	72	12	101	51	13	4	31	1.60
5757857--5758016	45	3.5	44	74	9	144	51	13	4	31	1.60
5758177--5758259	29	3.0	28	96	3	150	61	7	9	21	1.51
5758175--5758259	27	3.1	27	91	6	143	61	7	9	22	1.51
5761960--5761992	16	2.1	16	94	0	57	66	6	3	24	1.28
5770391--5770539	81	1.8	81	97	0	280	34	9	14	41	1.78
5772801--5772859	29	2.0	29	86	0	82	52	5	5	37	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5773658--5773707	23	2.1	24	81	3	57	16	4	28	52	1.61
5778946--5778972	2	13.5	2	100	0	54	48	0	0	51	1.00
5783451--5783479	13	2.1	14	93	6	51	0	6	3	89	0.57
5787398--5787432	17	2.1	17	88	0	52	62	0	17	20	1.32
5789314--5789378	32	2.0	32	100	0	130	50	24	6	18	1.69
5791027--5791052	3	8.7	3	100	0	52	0	34	0	65	0.93
5797752--5797900	81	1.8	81	95	0	271	34	8	14	42	1.76
5800165--5800223	29	2.0	29	86	0	82	52	5	5	37	1.46
5809903--5809932	5	6.0	5	92	0	51	56	0	3	40	1.16
5811538--5811564	2	13.5	2	100	0	54	51	0	48	0	1.00
5811863--5812045	91	2.0	91	89	0	276	34	30	14	20	1.92
5821249--5821291	23	1.9	23	85	4	61	55	4	4	34	1.41
5821249--5821303	23	2.5	22	80	8	58	61	3	3	30	1.30
5821282--5821337	19	3.1	19	74	7	62	60	5	0	33	1.19
5821637--5821673	2	19.0	2	88	5	58	48	0	0	51	1.00
5821989--5822038	26	2.0	25	88	4	73	60	8	2	30	1.37
5823442--5823474	2	16.5	2	100	0	66	48	0	0	51	1.00
5823928--5823977	26	2.0	25	84	4	64	28	6	10	56	1.56
5824556--5824612	30	1.9	30	85	0	78	26	7	7	59	1.49
5833460--5833489	15	2.1	15	93	6	53	20	3	0	76	0.92
5835725--5835789	3	22.0	3	96	3	123	33	0	0	66	0.92
5842814--5842891	38	2.1	38	95	0	138	51	21	1	25	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5843044--5843226	91	2.0	91	93	0	312	33	30	15	20	1.94
5854043--5854317	131	2.1	131	97	0	514	42	6	8	42	1.59
5854445--5854496	21	2.5	22	85	14	74	51	1	0	46	1.12
5854485--5854517	16	2.0	16	94	5	57	48	0	0	51	1.00
5856379--5856422	18	2.4	19	96	3	81	29	0	0	70	0.88
5856754--5856784	15	2.1	15	94	5	55	70	0	0	29	0.87
5864734--5864780	25	2.0	23	83	8	58	68	6	17	8	1.37
5866228--5866278	23	2.2	23	96	0	93	58	3	11	25	1.50
5866608--5866655	26	2.0	24	88	12	71	31	2	2	64	1.16
5873195--5873249	14	3.9	14	72	13	58	54	12	10	21	1.68
5878203--5878231	2	14.5	2	100	0	58	51	0	0	48	1.00
5882245--5882283	18	2.1	19	90	4	62	48	2	15	33	1.58
5882347--5882389	3	14.3	3	100	0	86	67	0	0	32	0.91
5892096--5892124	2	14.5	2	100	0	58	51	0	0	48	1.00
5894741--5894795	26	2.2	25	83	3	65	50	3	7	38	1.48
5895235--5895267	2	16.5	2	100	0	66	51	0	0	48	1.00
5901479--5901807	180	1.9	176	80	8	391	36	10	9	43	1.71
5902783--5902849	14	4.8	14	73	12	57	70	10	2	16	1.28
5903116--5903356	131	1.8	131	84	5	335	47	14	11	26	1.78
5903090--5903363	87	3.1	86	81	4	273	45	14	12	26	1.81
5903090--5903363	44	6.2	44	81	4	277	45	14	12	26	1.81
5903090--5903363	131	2.1	131	81	6	331	45	14	12	26	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5916673--5916723	19	3.1	15	77	22	57	47	1	5	45	1.38
5917480--5917562	37	2.3	37	85	4	116	44	3	2	49	1.32
5929104--5929130	2	13.5	2	100	0	54	48	0	0	51	1.00
5930637--5930691	14	3.9	14	72	13	58	21	10	12	54	1.68
5941979--5942036	3	20.0	3	86	13	86	67	0	0	32	0.91
5944731--5944782	27	1.9	27	84	0	68	15	13	3	67	1.37
5953801--5953850	26	2.0	25	88	4	73	48	2	12	38	1.52
5960290--5960316	11	2.5	11	100	0	54	40	11	0	48	1.39
5960609--5960655	25	1.9	24	83	12	60	29	10	8	51	1.66
5961773--5961816	17	2.6	17	78	3	54	18	9	0	72	1.10
5961861--5961927	14	4.8	14	73	12	57	70	10	2	16	1.28
5962171--5962445	44	6.2	44	82	3	304	45	16	12	25	1.82
5962171--5962445	132	2.1	131	82	5	340	45	16	12	25	1.82
5966642--5966666	2	12.5	2	100	0	50	52	0	0	48	1.00
5967275--5967304	2	15.0	2	100	0	60	50	0	0	50	1.00
5967787--5967835	24	2.0	24	96	0	89	4	6	26	63	1.36
5970816--5970850	18	1.9	18	88	0	52	28	0	25	45	1.54
5978094--5978139	24	1.9	24	86	0	65	17	32	21	28	1.96
5986913--5986962	19	2.7	19	78	3	57	18	2	4	76	1.04
5987659--5987704	11	4.3	11	83	10	51	41	0	0	58	0.98
5987731--5987769	21	2.0	21	90	10	64	61	2	0	35	1.10
5989326--5989364	13	2.9	13	84	3	51	0	7	10	82	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5989323--5989362	16	2.3	18	87	8	57	0	7	7	85	0.76
5989532--5989574	20	2.2	20	87	4	61	16	6	16	60	1.56
5991341--5991371	14	2.3	14	94	5	55	45	0	6	48	1.28
5991485--5991552	26	2.7	23	79	18	73	45	1	2	50	1.26
5991521--5991641	33	3.7	33	72	23	85	49	2	2	45	1.28
5991718--5991766	17	3.1	16	82	8	64	40	2	0	57	1.10
5993891--5993956	34	2.0	33	84	3	87	50	12	3	34	1.55
5995414--5995476	25	2.5	25	94	2	108	41	0	1	57	1.08
5999154--5999382	114	2.0	114	100	0	458	14	13	20	50	1.77
5999492--5999661	88	2.0	83	88	10	251	33	8	13	44	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77