genome.fa.s179.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  34  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6953010--6953070	29	2.2	29	77	13	67	45	0	4	49	1.23
6953540--6953590	26	2.0	26	96	0	93	49	9	11	29	1.72
6953631--6953669	19	2.1	19	85	9	53	38	23	10	28	1.87
6956595--6956784	93	2.0	93	96	0	362	50	6	22	21	1.71
6956884--6956916	14	2.3	15	94	5	59	6	0	24	69	1.10
6959232--6959270	14	2.8	14	88	0	51	17	0	5	76	0.96
6959293--6959466	4	43.0	4	70	17	76	28	2	2	66	1.18
6959217--6959355	8	15.8	8	69	20	55	17	2	4	74	1.10
6959360--6959438	40	2.0	40	87	0	113	32	2	3	60	1.28
6959360--6959466	18	5.8	18	73	13	65	31	2	2	62	1.24
6959386--6959452	14	4.9	14	73	10	50	32	1	2	62	1.19
6959384--6959468	22	4.1	21	72	15	61	29	3	2	64	1.22
6959367--6959526	42	3.9	41	78	8	119	27	4	4	63	1.32
6959827--6959859	13	2.5	13	90	9	50	30	3	3	63	1.24
6960365--6960407	8	5.2	8	88	2	50	18	0	0	81	0.69
6960364--6960404	9	4.3	9	85	11	55	17	0	0	82	0.66
6960363--6960404	10	4.3	10	78	6	50	16	0	0	83	0.65
6960399--6960439	22	2.0	21	86	13	59	34	0	7	58	1.26
6960453--6960529	5	15.6	5	75	20	65	16	3	1	77	0.98
6960453--6960534	23	3.1	28	73	21	88	17	4	1	76	1.02
6960587--6960826	57	4.1	57	82	12	283	42	9	12	35	1.75
6960587--6960826	116	2.1	115	86	6	333	42	9	12	35	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6971256--6971311	16	3.5	15	75	13	58	83	0	10	5	0.78
6971256--6971311	15	3.9	13	77	20	51	83	0	10	5	0.78
6971252--6971326	19	3.9	19	78	15	75	80	0	12	8	0.92
6971261--6971309	25	1.9	25	83	4	62	83	0	10	6	0.80
6972327--6972617	42	6.9	40	81	6	244	26	14	19	39	1.91
6972326--6972617	83	3.5	82	78	8	277	26	14	19	39	1.91
6972858--6973017	4	40.0	4	71	18	68	31	3	2	62	1.24
6972859--6973008	10	15.9	9	68	24	64	32	3	2	61	1.26
6972920--6972989	22	3.3	20	78	15	70	32	4	4	58	1.37
6972847--6973001	64	2.5	62	72	19	135	32	3	3	60	1.31
6972956--6973048	21	4.6	19	72	17	64	27	4	4	63	1.32
6972916--6973077	42	3.9	41	82	8	148	29	4	3	62	1.31
6973428--6973489	31	2.0	32	84	9	83	19	12	22	45	1.84
6973984--6974064	6	13.3	6	72	19	53	16	3	1	79	0.95
6973985--6974025	14	2.7	16	85	11	59	14	2	2	80	0.92
6973984--6974064	5	16.6	5	72	20	57	16	3	1	79	0.95
6973984--6974064	13	6.1	12	75	24	58	16	3	1	79	0.95
6974081--6974356	60	4.7	58	87	8	359	44	6	11	36	1.68
6974123--6974216	30	3.1	30	67	17	86	43	6	11	38	1.67
6977856--6977881	3	8.7	3	100	0	52	69	0	0	30	0.89
6978409--6978462	21	2.6	21	80	8	56	37	1	0	61	1.07
6982241--6982297	28	2.0	28	96	0	105	26	10	12	50	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6982729--6982757	13	2.1	14	93	6	51	41	0	0	58	0.98
6988020--6988044	10	2.5	10	100	0	50	8	16	40	36	1.77
6990307--6990568	131	2.0	131	100	0	524	43	4	6	45	1.49
6991972--6991998	3	9.0	3	100	0	54	33	0	0	66	0.92
6993587--6993645	6	9.7	6	77	12	50	3	16	0	79	0.86
7002729--7002814	45	1.9	45	97	0	163	37	23	19	19	1.94
7003142--7003170	14	2.0	15	93	6	51	10	13	0	75	1.04
7006612--7006676	3	21.7	3	96	0	121	35	0	30	33	1.58
7006675--7006738	3	21.3	3	100	0	128	67	0	0	32	0.91
7006737--7006774	3	12.7	3	100	0	76	68	31	0	0	0.90
7007413--7007464	23	2.2	24	83	10	63	75	0	1	23	0.91
7007411--7007474	34	1.9	33	81	9	76	71	0	1	26	0.94
7013411--7013452	13	3.1	13	93	6	66	64	0	2	33	1.07
7013613--7013680	8	8.6	8	73	13	52	58	1	0	39	1.07
7013593--7013670	39	2.0	40	85	7	106	57	1	0	41	1.07
7017491--7017524	2	17.5	2	87	6	52	50	2	0	47	1.16
7019225--7019267	17	2.5	17	85	7	52	34	2	4	58	1.32
7019526--7019667	71	2.0	71	92	0	239	39	18	14	27	1.90
7020202--7020240	20	2.0	20	100	0	78	20	5	12	61	1.50
7024467--7024499	2	16.5	2	100	0	66	51	0	48	0	1.00
7031627--7031690	29	2.2	30	82	2	76	28	9	12	50	1.71
7044978--7045032	26	2.1	26	86	0	74	60	18	14	7	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7047666--7047746	42	1.9	42	92	0	135	35	9	9	44	1.71
7052521--7052582	27	2.3	27	100	0	124	43	9	8	38	1.67
7056477--7056515	17	2.3	17	90	0	60	74	2	12	10	1.17
7063770--7063811	22	1.9	22	85	9	59	19	0	4	76	0.96
7073946--7073998	22	2.3	22	75	18	54	32	11	16	39	1.85
7073882--7074107	104	2.2	104	87	6	325	34	15	15	34	1.89
7074546--7074608	26	2.4	26	86	0	81	36	7	15	39	1.77
7075839--7075957	62	1.9	62	91	0	193	31	16	13	37	1.88
7076101--7076155	15	3.4	15	77	18	56	1	12	1	83	0.80
7076083--7076153	30	2.3	31	90	4	117	2	15	2	78	0.98
7078037--7078179	72	2.0	72	100	0	286	18	18	9	53	1.71
7081360--7081500	35	4.0	35	74	12	108	31	12	19	35	1.90
7081361--7081472	34	3.1	37	75	16	117	30	9	23	36	1.87
7085341--7085389	14	3.6	14	74	23	50	77	4	2	16	1.01
7086560--7086612	20	2.5	22	77	17	58	77	5	9	7	1.12
7089696--7089758	11	5.7	11	76	12	58	76	0	4	19	0.96
7089709--7089758	15	3.2	16	80	11	59	78	0	2	20	0.86
7089703--7089767	22	3.0	21	81	18	71	76	0	4	18	0.95
7089708--7089766	11	5.3	12	82	10	56	77	0	3	18	0.90
7090816--7091297	194	2.5	194	79	6	476	44	13	21	20	1.85
7090809--7091353	65	8.4	65	75	9	380	44	13	21	20	1.86
7091140--7091472	66	5.1	66	78	5	275	43	13	23	20	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7090865--7091399	131	4.1	131	76	8	335	43	13	22	20	1.87
7091006--7091473	65	7.2	64	77	6	297	41	13	24	20	1.88
7091609--7091676	17	3.9	17	74	11	66	33	8	19	38	1.82
7092921--7092950	13	2.4	13	94	5	53	3	6	0	90	0.56
7097864--7097907	22	2.0	22	82	8	54	61	4	6	27	1.41
7098264--7098288	13	1.9	13	100	0	50	64	16	0	20	1.30
7100083--7100128	23	2.0	23	82	0	56	56	0	2	41	1.11
7100104--7100144	13	3.0	13	86	10	55	58	2	0	39	1.11
7106198--7106271	34	2.2	34	78	7	80	47	1	1	50	1.18
7106258--7106303	16	2.7	17	80	16	51	56	2	0	41	1.11
7114435--7114478	22	2.0	22	95	0	79	31	11	13	43	1.80
7118149--7118192	22	2.0	22	95	0	79	31	11	13	43	1.80
7121862--7121905	22	2.0	22	95	0	79	31	11	13	43	1.80
7129929--7129971	22	2.1	21	87	12	63	30	0	2	67	1.03
7132737--7132813	23	3.3	23	77	0	73	50	10	9	29	1.67
7133129--7133167	21	1.9	20	84	5	51	69	10	0	20	1.17
7141208--7141255	21	2.3	20	82	10	53	62	0	0	37	0.95
7143029--7143058	3	10.0	3	100	0	60	66	0	0	33	0.92
7143704--7143746	20	2.0	22	86	8	63	60	0	2	37	1.10
7143690--7143824	23	6.3	22	66	23	58	53	0	2	43	1.18
7143733--7143809	32	2.5	32	79	12	97	50	1	2	45	1.23
7143736--7143813	31	2.5	31	78	15	90	51	1	2	44	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7144407--7144446	20	2.0	20	90	5	62	52	0	0	47	1.00
7144672--7144717	14	3.5	13	88	8	60	63	0	2	34	1.07
7145110--7145144	6	5.8	6	96	0	52	51	0	8	40	1.33
7154909--7154938	16	1.9	16	93	6	53	26	0	10	63	1.26
7155082--7155147	20	3.1	21	68	27	50	45	1	3	50	1.26
7155082--7155167	42	2.0	43	86	6	122	45	1	2	51	1.21
7155095--7155174	21	3.8	21	78	4	72	43	1	2	52	1.22
7155115--7155186	22	3.3	20	76	18	65	45	0	2	51	1.15
7155090--7155186	43	2.3	42	84	10	117	45	1	3	50	1.24
7155373--7155434	29	2.2	28	85	2	79	48	1	1	48	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77