genome.fa.s179.2.7.7.80.10.50.1000.74.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  74  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14887769--14888398	322	2.0	311	95	4	1124	30	17	19	33	1.94
14893478--14893566	46	2.0	44	95	4	160	50	8	2	38	1.46
14893767--14893804	13	2.7	14	84	11	51	34	0	5	60	1.19
14893815--14893864	25	2.0	26	88	4	75	24	2	2	72	1.06
14893858--14893905	24	2.0	24	84	8	62	45	0	2	52	1.12
14893989--14894071	27	2.8	32	79	15	83	46	2	2	48	1.28
14898075--14898106	13	2.4	14	94	5	57	0	0	12	87	0.54
14901466--14901512	18	2.6	17	83	9	67	31	0	6	61	1.21
14903358--14903399	17	2.5	17	88	0	57	66	0	2	30	1.04
14903369--14903459	9	9.7	9	74	17	62	60	3	3	32	1.29
14903330--14903450	10	12.3	10	73	15	74	59	2	3	34	1.27
14903370--14903458	8	9.6	8	79	15	52	59	3	3	33	1.30
14903556--14903690	10	13.8	9	74	14	99	55	2	2	38	1.30
14903557--14903698	20	7.3	19	76	13	112	56	3	2	37	1.31
14903542--14903698	28	5.4	28	78	8	120	57	3	2	35	1.30
14903542--14903698	9	16.2	9	70	16	82	57	3	2	35	1.30
14903549--14903698	19	7.7	18	73	16	113	58	3	2	36	1.29
14904260--14904293	11	3.2	11	83	8	52	29	0	0	70	0.87
14904406--14904457	20	2.6	20	84	6	61	36	1	3	57	1.28
14904406--14904471	21	3.3	19	75	10	60	40	4	3	51	1.38
14904541--14904597	16	3.4	16	73	7	51	43	1	3	50	1.29
14904553--14904590	17	2.2	18	85	4	51	34	2	5	57	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14904757--14904806	26	1.9	26	87	0	73	48	6	16	30	1.70
14906228--14906296	30	2.3	31	80	7	79	75	1	14	8	1.11
14906702--14906757	25	2.2	24	76	14	60	73	0	12	14	1.11
14907226--14907267	15	2.9	15	83	16	61	69	0	7	23	1.13
14908102--14908132	13	2.5	13	94	5	55	16	0	0	83	0.64
14908102--14908132	6	5.0	6	92	7	53	16	0	0	83	0.64
14908667--14908696	14	2.1	14	100	0	60	33	13	46	6	1.69
14909341--14909382	13	2.9	14	76	16	50	66	0	0	33	0.92
14917886--14917921	2	18.0	2	100	0	72	50	0	0	50	1.00
14918449--14918501	25	2.1	26	89	3	81	11	5	13	69	1.34
14921222--14921265	19	2.3	19	88	0	70	70	0	0	29	0.88
14931032--14931085	23	2.4	22	76	14	56	18	12	7	61	1.54
14934280--14934318	17	2.4	16	82	4	51	76	0	17	5	0.96
14935166--14935207	19	2.2	20	86	4	59	80	2	11	4	0.95
14935787--14935845	23	2.6	23	83	2	75	37	18	13	30	1.90
14935784--14935838	22	2.4	23	84	3	76	38	20	10	30	1.87
14935809--14935868	23	2.6	23	81	2	66	36	16	16	30	1.91
14935877--14935968	22	4.2	22	70	10	62	34	17	20	27	1.95
14936169--14936804	97	6.6	96	76	5	478	39	19	13	27	1.89
14936161--14936841	193	3.5	193	78	3	600	39	19	12	28	1.89
14936182--14936906	96	7.5	95	74	9	339	38	20	13	28	1.89
14937165--14937333	71	2.4	71	84	6	209	17	14	13	55	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14937202--14937403	35	5.8	35	73	10	153	14	13	15	56	1.67
14937276--14937403	36	3.7	36	75	9	131	14	11	15	58	1.63
14937202--14937396	71	2.8	71	84	5	202	14	13	14	57	1.66
14937442--14937642	107	1.9	108	82	5	255	17	18	13	49	1.79
14937668--14937762	8	12.1	8	67	12	54	78	9	1	10	1.00
14937668--14937758	40	2.4	37	82	15	105	79	9	1	9	1.00
14940413--14940454	14	3.0	14	80	13	59	47	21	7	23	1.75
14941872--14941911	16	2.5	15	88	8	53	47	2	2	47	1.29
14941959--14942011	26	2.1	25	93	6	90	35	0	0	64	0.94
14943198--14943237	13	2.9	13	85	10	53	62	0	0	37	0.95
14949836--14949877	19	2.2	20	86	4	59	4	11	2	80	0.95
14963282--14963374	46	2.0	46	97	0	177	45	19	16	19	1.86
14963903--14963930	2	14.0	2	100	0	56	0	50	0	50	1.00
14965080--14965105	12	2.2	12	100	0	52	65	0	7	26	1.20
14965491--14965627	67	2.0	68	81	4	161	37	6	12	43	1.69
14971452--14971477	13	2.0	13	100	0	52	38	0	0	61	0.96
14971437--14971479	14	3.0	14	83	13	52	37	0	0	62	0.95
14972116--14972145	14	2.1	14	100	0	60	6	46	13	33	1.69
14972677--14972727	25	2.1	23	92	7	84	62	0	0	37	0.95
14972775--14972812	15	2.4	16	82	13	51	47	2	2	47	1.30
14972775--14972814	16	2.5	15	88	8	53	47	2	2	47	1.29
14978184--14978319	67	2.0	67	81	5	159	43	12	6	37	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14980431--14980522	46	2.0	45	93	2	157	17	16	20	45	1.85
14992447--14992570	61	2.0	61	96	1	232	18	5	22	53	1.65
14999442--14999492	20	2.7	20	87	6	70	58	0	0	41	0.98
14999459--14999501	19	2.3	19	80	8	52	62	0	0	37	0.95
14999598--14999642	22	2.0	22	87	8	65	53	0	0	46	1.00
15007327--15007451	62	2.0	61	95	3	225	18	6	22	52	1.67
15014190--15014226	6	6.0	6	87	6	56	45	0	0	54	1.00
15014336--15014397	20	3.2	20	84	6	74	59	0	0	40	0.97
15014599--15014623	13	1.9	13	100	0	50	48	0	32	20	1.50
15017684--15017731	25	1.9	25	100	0	96	35	14	12	37	1.84
15019295--15019347	27	2.0	27	92	0	88	50	24	7	16	1.71
15023661--15023688	2	14.0	2	100	0	56	50	0	50	0	1.00
15024994--15025058	27	2.3	27	84	7	76	47	7	3	41	1.48
15028793--15028821	14	2.1	14	93	6	51	0	10	0	89	0.48
15034291--15034376	33	2.6	33	78	5	95	27	4	15	52	1.62
15034404--15034445	15	2.7	15	85	7	57	54	0	0	45	0.99
15034404--15034482	16	4.6	17	77	13	72	54	0	0	45	0.99
15034533--15034578	23	2.0	23	95	0	83	41	0	2	56	1.11
15034628--15034669	15	2.7	15	85	7	57	54	0	0	45	0.99
15034628--15034727	19	5.7	17	77	12	78	54	0	2	44	1.11
15034656--15034728	17	3.9	19	68	16	55	54	0	2	42	1.14
15034383--15034793	224	1.8	224	98	0	804	48	2	1	47	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15034766--15034850	29	2.9	30	78	13	88	43	1	1	54	1.15
15037098--15037165	24	2.8	24	71	8	66	41	5	5	47	1.52
15037150--15037203	23	2.3	23	83	0	72	27	9	9	53	1.63
15037279--15037334	29	1.9	29	89	7	87	35	3	5	55	1.40
15038707--15038774	34	2.0	34	97	0	127	47	4	23	25	1.70
15051633--15051683	27	1.9	26	84	11	68	54	9	3	31	1.51
15064179--15064210	14	2.2	15	94	5	57	59	3	0	37	1.13
15069655--15069683	2	14.5	2	100	0	58	51	0	0	48	1.00
15072841--15072894	27	2.0	27	85	0	72	37	24	12	25	1.91
15074221--15074282	21	3.0	20	73	17	54	38	0	4	56	1.21
15103745--15103786	20	2.0	21	86	4	59	57	0	2	40	1.12
15103749--15103807	28	2.0	31	87	12	88	50	1	1	45	1.21
15105502--15105551	21	2.4	21	89	0	73	18	0	32	50	1.47
15105527--15105787	58	4.5	59	78	9	216	22	1	27	48	1.59
15105592--15105787	29	6.8	28	71	12	103	21	1	27	50	1.56
15105517--15105799	145	2.0	145	84	6	378	21	1	28	48	1.58
15105512--15105787	87	3.2	86	77	11	228	21	1	27	48	1.59
15105946--15105986	3	13.7	3	100	0	82	34	0	0	65	0.93
15107144--15107187	11	3.8	11	85	8	52	15	11	50	22	1.76
15107318--15107365	16	3.0	17	79	14	57	37	0	2	60	1.09
15107578--15107621	17	2.7	16	75	3	52	59	4	0	36	1.18
15107982--15108030	19	2.6	18	78	15	55	44	2	0	53	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15107977--15108030	17	3.3	16	80	19	51	44	1	0	53	1.11
15113963--15114009	21	2.2	21	100	0	94	63	8	0	27	1.23
15115993--15116051	14	3.9	15	77	14	50	67	1	3	27	1.16
15116807--15116855	16	3.0	16	85	8	55	26	4	0	69	1.06
15116737--15116910	82	2.1	83	78	13	178	32	5	2	59	1.34
15117209--15117242	17	2.0	17	94	0	59	50	0	2	47	1.16
15117732--15117776	22	2.0	22	82	8	54	33	0	0	66	0.92
15117998--15118032	2	17.5	2	88	11	54	51	0	2	45	1.16
15117998--15118040	12	3.4	12	81	12	50	51	0	6	41	1.29
15124144--15124211	29	2.3	27	76	16	64	55	2	5	35	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77