genome.fa.s179.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  27  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5271667--5271733	33	2.0	35	82	11	86	2	22	0	74	0.95
5274527--5274560	5	6.8	5	87	12	52	20	0	0	79	0.73
5275745--5275921	95	1.9	94	83	1	228	42	11	9	36	1.75
5282570--5282614	23	1.9	24	86	13	67	57	8	22	11	1.60
5283512--5283550	16	2.4	16	91	0	69	30	12	15	41	1.85
5283667--5283757	37	2.4	37	85	5	112	37	9	12	40	1.76
5284266--5284295	12	2.5	12	88	0	51	20	0	6	73	1.05
5286014--5286074	24	2.6	23	82	14	88	27	1	14	55	1.49
5286026--5286114	35	2.6	34	80	8	99	28	1	12	58	1.41
5289169--5289220	22	2.3	23	80	6	61	44	0	0	55	0.99
5289554--5289584	3	10.3	3	100	0	62	32	0	0	67	0.91
5289653--5289688	18	2.0	18	100	0	72	55	0	0	44	0.99
5289653--5289699	8	5.5	8	83	14	58	51	0	2	46	1.13
5290351--5290381	2	15.5	2	100	0	62	51	0	0	48	1.00
5291717--5291743	14	1.9	14	100	0	54	37	0	0	62	0.95
5292012--5292057	22	2.1	22	83	0	56	52	6	10	30	1.62
5292261--5292321	22	2.9	22	75	15	58	42	4	0	52	1.23
5292192--5292488	166	1.8	162	82	9	377	42	5	4	47	1.47
5292384--5292436	20	2.5	21	72	12	54	52	0	0	47	1.00
5292545--5292626	42	2.0	42	85	9	114	48	1	3	46	1.27
5292781--5292847	21	3.1	22	79	12	68	55	1	0	43	1.09
5292784--5292881	44	2.2	46	82	10	123	52	2	2	43	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5292927--5292999	17	4.3	16	75	13	58	46	0	0	53	1.00
5292974--5293039	15	4.5	16	70	24	56	48	1	0	50	1.10
5292984--5293047	26	2.5	26	90	5	96	50	1	0	48	1.10
5292977--5293047	9	8.2	9	71	20	53	49	1	0	49	1.09
5298589--5298626	3	12.7	3	100	0	76	34	34	0	31	1.58
5299989--5300026	2	19.0	2	100	0	76	50	0	0	50	1.00
5301282--5301323	21	2.0	22	86	13	61	69	0	0	30	0.89
5312046--5312076	3	10.3	3	100	0	62	0	32	0	67	0.91
5312862--5312933	23	3.2	23	69	20	62	62	2	4	30	1.28
5313928--5313975	13	3.8	13	75	5	53	8	10	0	81	0.88
5315553--5315609	15	3.9	15	75	11	55	50	0	0	49	1.00
5315535--5315610	28	2.7	28	82	12	93	47	0	2	50	1.15
5317033--5317057	13	1.9	13	100	0	50	40	0	4	56	1.18
5317831--5317912	31	2.8	28	77	10	92	19	14	15	50	1.79
5319369--5319410	21	2.0	21	85	4	57	23	0	7	69	1.13
5319287--5319746	162	2.8	163	80	8	424	37	6	8	46	1.61
5319359--5319735	81	4.6	81	72	12	288	37	6	8	47	1.59
5319378--5319775	162	2.4	161	84	3	503	38	6	9	46	1.61
5321971--5322009	19	2.1	19	90	0	60	20	5	5	69	1.28
5322006--5322038	17	2.0	16	94	5	57	36	3	6	54	1.41
5322007--5322048	17	2.6	17	85	7	52	42	2	4	50	1.36
5326133--5326167	18	1.9	18	88	0	52	68	5	5	20	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5326149--5326216	7	9.3	7	70	20	50	76	5	0	17	0.98
5326144--5326216	14	5.2	13	72	22	58	76	5	0	17	0.97
5326144--5326216	6	11.5	6	72	20	51	76	5	0	17	0.97
5326541--5326587	10	4.7	10	76	7	51	51	6	0	42	1.27
5326556--5326598	19	2.3	19	91	0	68	37	9	2	51	1.47
5327112--5327195	3	28.0	3	74	4	71	61	5	4	27	1.39
5327113--5327146	17	1.9	18	94	5	61	70	5	0	23	1.09
5329962--5330137	89	2.0	89	93	0	298	23	25	13	38	1.90
5337833--5337936	52	2.0	53	90	1	165	31	13	6	48	1.68
5337842--5337942	53	1.9	52	89	2	157	30	13	5	49	1.66
5338436--5338483	24	2.0	25	83	4	62	41	8	4	45	1.53
5338562--5338586	9	2.8	9	100	0	50	80	0	0	20	0.72
5338839--5338888	16	3.3	15	81	15	59	2	42	0	56	1.11
5339482--5339527	18	2.5	18	85	3	65	73	2	0	23	0.94
5339486--5339530	22	2.0	24	86	8	67	71	2	0	26	0.98
5339658--5340393	80	9.1	79	73	11	442	37	8	8	45	1.65
5339649--5340393	322	2.3	318	83	4	872	37	8	8	45	1.66
5339649--5340391	162	4.6	162	82	4	840	37	8	8	45	1.65
5344144--5344397	128	2.0	128	80	8	293	38	12	11	37	1.79
5344144--5344397	64	4.0	64	79	7	214	38	12	11	37	1.79
5344490--5344529	15	2.7	15	84	7	55	45	7	12	35	1.70
5354242--5354284	20	2.2	20	88	8	63	65	0	2	32	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5357501--5357526	2	13.0	2	100	0	52	50	0	0	50	1.00
5359016--5359084	34	2.0	34	97	0	129	50	2	7	39	1.45
5360284--5360316	2	16.5	2	100	0	66	51	0	0	48	1.00
5362187--5362224	18	2.1	19	85	5	51	47	5	5	42	1.48
5367689--5367727	18	2.1	19	90	4	62	30	12	17	38	1.88
5369040--5369064	2	12.5	2	100	0	50	52	0	0	48	1.00
5372003--5372049	12	4.2	12	78	10	55	40	0	8	51	1.33
5372032--5372073	10	4.2	10	78	9	50	40	0	0	59	0.97
5373816--5373867	22	2.4	22	75	9	54	57	1	0	40	1.10
5373850--5373910	21	3.2	20	84	15	76	49	0	0	50	1.00
5374110--5374149	21	1.9	21	85	10	55	57	2	0	40	1.12
5374270--5374330	18	3.3	18	76	13	52	52	1	1	44	1.20
5375319--5375385	9	7.7	9	68	18	52	49	1	0	49	1.10
5376644--5376684	11	3.8	11	90	3	66	19	0	29	51	1.47
5376643--5376684	22	2.0	22	95	4	77	21	0	28	50	1.49
5376709--5376865	52	3.0	52	88	1	217	39	8	26	26	1.84
5377332--5377416	30	2.7	32	90	3	129	27	22	27	23	1.99
5377434--5377514	25	3.3	24	81	6	83	38	8	33	19	1.83
5377446--5377518	24	3.0	24	86	6	85	38	9	32	19	1.84
5377562--5377598	18	2.0	19	89	5	58	32	13	35	18	1.90
5377770--5377810	11	3.8	11	90	3	66	19	0	29	51	1.47
5377769--5377810	22	2.0	22	95	4	77	21	0	28	50	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5377835--5377990	52	3.0	52	87	2	208	39	8	26	25	1.84
5378456--5378524	31	2.2	31	94	0	120	28	24	23	23	1.99
5380718--5380775	27	2.2	26	87	3	80	36	5	0	58	1.20
5380967--5381009	21	2.0	22	90	4	70	55	0	11	32	1.36
5384467--5384499	3	11.0	3	100	0	66	0	0	33	66	0.92
5389246--5389280	18	2.0	17	88	5	52	42	2	0	54	1.15
5390930--5390981	23	2.3	23	89	0	77	34	3	5	55	1.42
5391556--5391752	61	3.2	60	78	7	182	43	12	12	31	1.80
5391371--5391708	123	2.7	125	72	12	293	42	14	11	31	1.80
5391605--5391969	61	6.0	60	69	12	188	43	10	12	33	1.77
5391806--5391926	62	1.9	63	88	1	181	51	9	9	29	1.66
5391621--5392038	183	2.3	183	78	9	415	42	11	11	34	1.77
5392002--5392203	62	3.5	59	76	7	191	46	8	13	32	1.73
5395480--5395566	46	1.9	45	81	9	106	42	5	0	51	1.25
5395768--5395827	32	1.9	31	86	3	84	50	1	6	41	1.39
5395956--5395995	14	2.9	14	92	0	62	52	2	0	45	1.14
5397227--5397270	16	2.8	16	83	16	56	45	6	9	38	1.63
5399197--5399270	22	3.4	20	80	14	85	17	4	1	77	1.00
5399210--5399270	5	11.6	5	74	22	54	18	3	1	77	0.99
5400605--5400654	21	2.3	21	82	3	55	30	4	6	60	1.39
5405792--5405842	25	2.1	25	88	3	77	64	5	7	21	1.41
5410012--5410055	22	2.0	22	90	0	70	43	11	11	34	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5411810--5411855	15	3.1	14	84	6	56	63	6	0	30	1.20
5411840--5411897	20	2.8	20	78	2	62	63	13	1	20	1.38
5415977--5416020	23	1.9	23	85	0	61	40	0	2	56	1.11
5416147--5416198	25	2.1	25	89	7	79	53	0	5	40	1.25
5416650--5416695	18	2.6	18	77	16	51	26	0	0	73	0.83
5416677--5416703	4	6.8	4	100	0	54	22	0	0	77	0.76
5427735--5427772	2	19.0	2	100	0	76	50	0	50	0	1.00
5430371--5430414	18	2.4	18	76	0	52	36	11	11	40	1.77
5433476--5433816	145	2.4	143	75	6	323	38	7	10	42	1.69
5435295--5435359	25	2.6	25	87	0	94	35	33	1	29	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77