genome.fa.s179.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  37  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7502371--7502416	18	2.6	18	82	6	58	45	2	2	50	1.26
7502506--7502572	30	2.2	31	89	2	100	47	34	1	16	1.56
7502513--7502569	16	3.7	16	76	9	55	50	28	1	19	1.57
7502697--7502731	12	2.8	12	86	4	52	37	37	0	25	1.57
7508010--7508045	15	2.3	16	90	9	65	44	33	0	22	1.53
7514043--7514095	10	5.6	9	80	10	52	83	1	7	7	0.89
7514058--7514096	11	3.7	10	86	6	51	84	2	2	10	0.81
7515130--7515562	109	4.0	108	83	4	489	21	19	12	47	1.81
7515246--7515415	35	4.7	35	68	5	106	20	20	12	45	1.84
7515604--7515728	64	2.0	63	82	3	153	29	18	12	40	1.87
7515716--7515806	45	2.0	45	84	6	119	18	15	14	51	1.76
7515762--7516075	135	2.3	135	88	1	477	22	18	14	44	1.85
7516034--7516120	45	1.9	45	92	0	147	18	13	16	51	1.76
7515668--7516395	316	2.3	316	87	2	1016	22	18	13	45	1.84
7518185--7518215	16	1.9	16	93	0	53	58	0	0	41	0.98
7518466--7518500	12	2.8	12	86	4	52	40	34	0	25	1.56
7519521--7519563	22	2.0	22	86	9	61	60	2	0	37	1.10
7520355--7520405	20	2.5	20	75	12	50	49	0	0	50	1.00
7520367--7520407	12	3.1	14	80	16	52	48	0	0	51	1.00
7523655--7523700	18	2.6	18	82	6	58	28	4	2	65	1.23
7523863--7523918	24	2.3	23	73	8	58	21	3	3	71	1.17
7524962--7525017	8	6.6	8	78	11	58	14	0	5	80	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7524963--7525017	15	3.8	15	80	9	60	14	0	5	80	0.89
7525318--7525425	47	2.3	47	88	3	155	35	25	15	23	1.94
7525405--7525447	22	2.0	22	90	0	68	30	34	18	16	1.93
7525360--7525493	68	2.0	69	86	1	189	34	28	13	23	1.93
7525426--7526115	47	14.6	48	80	5	712	37	23	11	28	1.88
7526878--7526920	8	5.1	8	80	8	50	6	13	0	79	0.93
7526878--7526920	17	2.6	17	89	10	63	6	13	0	79	0.93
7538171--7538216	18	2.6	18	82	6	58	28	4	2	65	1.23
7541356--7541389	15	2.3	15	94	0	59	29	0	0	70	0.87
7542243--7542286	22	2.0	22	86	8	63	61	2	0	36	1.09
7543086--7543126	12	3.1	14	80	16	52	48	0	0	51	1.00
7544640--7544669	15	2.0	15	93	0	51	50	0	0	50	1.00
7544642--7544698	24	2.5	22	88	8	80	59	0	0	40	0.97
7544657--7544702	15	3.0	16	78	6	51	67	0	0	32	0.91
7546121--7546189	16	4.4	16	81	3	68	44	34	1	18	1.59
7546162--7546200	16	2.4	17	91	4	62	48	25	0	25	1.51
7546162--7546211	17	3.1	16	81	13	50	50	22	2	26	1.60
7546122--7546317	15	13.0	15	67	19	52	43	31	1	23	1.61
7551553--7551604	8	6.1	8	80	12	50	82	0	7	9	0.84
7551555--7551588	9	3.7	9	88	7	50	85	0	2	11	0.71
7551553--7551605	17	3.1	17	83	2	61	83	0	7	9	0.83
7553300--7553412	41	2.8	39	83	4	127	31	16	15	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7553844--7553886	22	2.0	22	86	9	61	30	25	16	27	1.97
7553639--7554202	109	5.2	110	79	7	576	23	21	16	38	1.92
7553947--7553997	22	2.3	23	86	10	70	31	17	11	39	1.86
7553639--7554182	218	2.5	218	84	3	691	23	21	16	38	1.92
7554700--7554754	3	19.0	3	75	7	51	61	0	0	38	0.96
7554722--7554760	19	2.1	19	90	0	60	74	0	0	25	0.82
7555926--7555952	3	9.0	3	100	0	54	33	0	0	66	0.92
7556208--7556296	15	5.8	15	75	15	65	44	30	1	23	1.60
7556208--7556264	14	3.8	14	80	15	69	43	33	0	22	1.54
7556223--7556298	16	4.8	16	74	9	66	46	28	1	23	1.61
7556223--7556355	47	2.9	43	77	14	124	45	30	1	22	1.62
7556279--7556341	23	2.8	23	80	2	74	46	26	1	25	1.62
7556286--7556341	23	2.5	23	85	2	78	44	28	1	25	1.64
7556388--7556464	29	2.6	28	78	10	73	50	29	1	18	1.55
7558151--7558180	16	1.9	15	93	6	51	23	0	0	76	0.78
7563052--7563085	17	1.9	18	94	5	61	88	5	5	0	0.64
7565092--7565288	87	2.3	87	83	2	234	21	23	18	37	1.94
7565180--7565614	110	4.0	109	80	5	441	23	22	16	37	1.93
7565479--7565527	22	2.2	23	88	3	73	24	18	20	36	1.94
7565196--7565614	218	1.9	219	83	3	540	23	21	15	38	1.93
7565588--7565648	23	2.7	23	82	2	79	24	26	19	29	1.99
7565478--7565747	133	2.0	133	83	8	336	22	20	20	37	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7565612--7565855	110	2.2	109	82	2	283	22	21	19	36	1.95
7565841--7565888	22	2.2	22	84	0	60	27	22	18	31	1.97
7566128--7566160	12	2.8	12	90	0	57	51	0	0	48	1.00
7566122--7566177	21	2.7	21	84	13	71	58	0	0	41	0.98
7567161--7567239	8	9.2	8	71	13	59	20	1	3	74	1.04
7567625--7567731	31	3.4	31	81	1	133	44	33	0	20	1.58
7567625--7567731	16	6.8	16	78	8	103	44	33	0	20	1.58
7567737--7567798	22	2.8	22	95	2	106	43	30	0	25	1.55
7567787--7567899	58	1.9	59	82	5	140	46	30	1	20	1.61
7567821--7567929	30	3.7	28	75	15	94	47	30	0	21	1.57
7567812--7567929	29	4.0	29	72	12	87	46	30	0	22	1.57
7573897--7573926	11	2.7	11	94	0	51	93	3	3	0	0.42
7576671--7576714	22	2.0	22	86	0	61	27	20	18	34	1.96
7576574--7577137	110	5.2	109	79	6	595	23	19	17	39	1.92
7576779--7576822	22	2.0	22	86	8	63	29	22	15	31	1.95
7576574--7577150	218	2.6	217	83	4	705	23	19	17	39	1.92
7577100--7577159	23	2.7	23	89	2	86	25	20	21	33	1.97
7576991--7577259	133	2.0	133	81	4	310	23	18	19	38	1.93
7577123--7577378	110	2.3	111	82	7	310	21	18	21	38	1.93
7577011--7577463	241	1.9	243	85	5	641	22	19	19	38	1.94
7577232--7577469	131	1.8	133	86	1	354	22	21	19	36	1.95
7577633--7577707	3	26.0	3	75	10	59	58	0	1	40	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7578033--7578061	13	2.2	13	100	0	58	79	6	6	6	1.06
7579185--7579291	31	3.4	31	79	3	126	43	34	1	19	1.62
7579185--7579291	16	6.8	16	77	8	103	43	34	1	19	1.62
7579311--7579349	14	2.8	14	92	0	60	43	25	0	30	1.55
7579312--7579359	14	3.4	14	88	0	51	43	29	0	27	1.55
7579373--7579481	30	3.7	28	76	15	103	47	29	1	21	1.61
7579345--7579476	58	2.3	56	81	10	149	45	31	1	21	1.61
7581435--7581507	38	1.9	38	83	8	96	32	23	15	28	1.95
7583349--7583375	14	1.9	14	100	0	54	18	0	0	81	0.69
7585012--7585052	8	5.4	7	91	8	55	12	0	7	80	0.90
7585020--7585052	15	2.1	15	94	5	57	12	0	6	81	0.85
7585352--7585402	27	1.9	26	88	4	75	52	11	0	35	1.38
7588292--7588337	18	2.6	18	82	0	56	50	2	0	47	1.13
7589667--7589691	10	2.5	10	100	0	50	76	8	0	16	1.02
7590682--7590710	13	2.3	13	94	5	51	6	3	6	82	0.93
7590697--7590745	17	2.8	17	84	6	62	12	2	14	71	1.23
7590696--7590745	18	2.8	18	87	3	66	12	2	14	72	1.22
7590705--7590769	28	2.5	25	82	12	78	15	4	12	67	1.37
7590922--7591935	48	21.5	46	73	11	311	37	21	12	28	1.90
7590951--7591144	98	2.0	97	84	7	250	39	19	11	29	1.87
7591049--7591225	82	2.2	83	80	6	191	36	22	12	28	1.91
7591144--7591991	48	17.7	49	82	7	897	37	22	12	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7602526--7602579	19	2.9	19	79	17	60	9	0	14	75	1.03
7603760--7603801	12	3.5	12	80	6	50	35	0	0	64	0.94
7604304--7604350	23	2.0	23	84	8	60	63	2	2	31	1.18
7605342--7605391	17	2.9	17	90	3	73	14	0	14	72	1.14
7607902--7607951	18	2.8	19	73	11	52	26	0	4	70	1.05
7619769--7619809	7	5.9	7	83	16	50	87	2	7	2	0.70
7619776--7619827	21	2.4	22	87	12	81	82	3	9	3	0.91
7619767--7619824	9	6.3	9	78	11	57	84	3	8	3	0.85
7621057--7621135	30	2.6	31	84	8	99	20	1	30	48	1.58
7622060--7622133	33	2.2	33	80	0	85	10	35	24	29	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77