genome.fa.s179.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  11  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1653533--1653592	20	3.0	20	95	4	113	25	10	35	30	1.88
1659255--1659289	18	2.0	18	88	5	54	25	11	8	54	1.64
1660445--1660572	64	2.0	66	85	3	179	41	3	0	53	1.24
1661805--1661845	21	2.0	20	85	4	55	41	0	0	58	0.98
1662103--1662148	19	2.4	19	76	20	51	58	2	0	39	1.10
1662233--1662404	91	1.9	89	86	2	245	33	5	12	47	1.66
1662326--1662366	16	2.5	17	84	7	50	31	9	9	48	1.69
1662876--1662965	32	2.8	32	81	3	92	53	0	1	45	1.07
1666974--1667017	12	3.4	12	77	17	52	68	0	31	0	0.90
1671272--1671306	16	2.1	17	89	5	54	51	5	0	42	1.25
1671330--1671385	29	1.9	29	88	0	85	55	3	0	41	1.17
1675237--1675280	20	2.1	21	87	4	63	65	0	0	34	0.93
1675236--1675288	21	2.5	21	81	9	63	66	0	0	33	0.92
1675227--1675297	22	3.2	21	77	15	72	66	0	1	32	1.01
1675218--1675306	27	3.2	27	76	9	81	65	0	1	33	1.00
1676639--1676728	45	2.0	45	82	8	112	45	14	11	28	1.79
1676808--1676950	68	2.1	70	86	2	200	48	6	7	36	1.59
1682914--1682994	6	13.8	6	70	17	55	17	2	1	79	0.92
1682914--1682994	18	4.7	16	77	19	74	17	2	1	79	0.92
1682917--1682993	20	3.9	19	76	15	59	18	2	1	77	0.95
1682939--1682994	21	2.8	20	78	21	64	19	0	0	80	0.71
1682948--1682988	15	2.7	15	85	10	57	21	0	0	78	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1682914--1682994	35	2.3	35	81	10	94	17	2	1	79	0.92
1683160--1683557	131	3.2	125	77	11	440	49	7	7	35	1.59
1683299--1683525	114	2.0	115	86	4	316	48	7	8	35	1.63
1686442--1686516	16	4.8	16	69	27	63	73	2	1	22	1.04
1686441--1686552	25	4.4	23	73	21	75	74	3	1	20	1.06
1686442--1686550	13	8.8	12	73	22	66	73	3	1	21	1.08
1686442--1686520	21	3.8	20	78	9	88	73	3	1	21	1.06
1687303--1687359	27	2.0	29	83	12	75	63	5	1	29	1.27
1688034--1688087	28	2.0	28	88	3	83	25	11	29	33	1.91
1688186--1688245	19	3.2	19	80	0	66	26	15	16	41	1.88
1688071--1688325	131	1.9	131	80	3	289	26	16	20	36	1.93
1688337--1688706	170	2.2	171	78	5	390	22	13	20	43	1.87
1688757--1688945	86	2.2	86	80	3	220	22	14	20	42	1.88
1689039--1689098	19	3.2	19	80	0	66	26	15	16	41	1.88
1689570--1689799	86	2.7	85	80	8	214	23	14	20	41	1.89
1688113--1689823	854	2.0	853	98	0	3323	24	14	20	40	1.90
1691253--1691301	4	11.5	4	83	12	62	20	4	2	73	1.10
1691380--1691481	54	1.9	53	88	6	152	45	6	6	41	1.58
1691402--1691481	27	2.9	28	71	14	85	42	7	7	42	1.61
1692645--1692716	29	2.6	28	77	16	80	54	0	0	45	0.99
1694305--1694344	20	2.0	20	85	9	55	50	0	2	47	1.14
1694339--1694390	24	2.0	27	82	17	65	48	3	7	40	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1694450--1694502	16	3.6	16	69	26	53	32	7	0	60	1.25
1694444--1694506	27	2.4	27	91	2	110	33	6	0	60	1.22
1696775--1696828	23	2.3	23	87	3	72	40	0	1	57	1.09
1696796--1696843	23	2.1	23	84	7	62	41	0	4	54	1.20
1699389--1699414	13	2.0	13	100	0	52	46	7	7	38	1.61
1701276--1701325	16	3.1	16	82	2	64	32	0	0	68	0.90
1702049--1702098	24	2.1	24	88	3	75	48	0	8	44	1.32
1709227--1709254	8	3.5	8	100	0	56	10	10	0	78	0.96
1709472--1709504	2	16.5	2	100	0	66	0	51	0	48	1.00
1711604--1711648	23	2.0	23	81	0	54	51	24	4	20	1.66
1737441--1737484	22	2.0	22	86	0	61	34	9	11	45	1.72
1739787--1739828	22	1.9	22	85	0	57	54	7	11	26	1.62
1751851--1751883	13	2.5	13	95	0	57	33	24	0	42	1.55
1768051--1768082	11	2.9	11	95	0	55	75	0	6	18	1.01
1779948--1779984	3	12.3	3	100	0	74	32	0	0	67	0.91
1780482--1780507	13	2.0	13	100	0	52	30	7	7	53	1.57
1780854--1780903	20	2.5	20	80	3	57	16	2	4	78	1.00
1780985--1781017	12	2.6	13	85	4	50	69	6	0	24	1.10
1791998--1792188	56	3.3	56	70	17	181	15	22	19	41	1.89
1791894--1792223	119	2.8	119	88	1	448	17	23	16	43	1.88
1792439--1792501	26	2.4	26	75	17	67	17	30	22	30	1.96
1792559--1792595	3	12.3	3	100	0	74	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1793453--1793509	19	2.9	18	80	15	53	14	7	1	77	1.06
1812690--1812730	17	2.4	17	87	0	64	36	17	21	24	1.94
1814265--1814307	22	2.0	22	90	9	70	34	9	11	44	1.73
1822474--1822532	11	5.1	11	76	11	55	28	0	3	67	1.06
1823055--1823187	64	2.1	64	100	0	266	49	12	6	32	1.64
1824395--1824446	21	2.5	21	90	6	79	50	0	0	50	1.00
1824395--1824446	22	2.5	22	93	6	90	50	0	0	50	1.00
1824431--1824482	14	3.6	14	75	10	50	57	0	0	42	0.98
1824419--1824490	30	2.4	30	83	4	83	55	0	0	44	0.99
1824434--1824472	16	2.4	16	86	0	51	61	0	0	38	0.96
1825483--1825507	7	3.6	7	100	0	50	28	0	0	72	0.86
1838227--1838276	25	2.0	25	100	0	100	20	32	8	40	1.81
1843340--1843389	21	2.4	20	76	6	55	68	6	4	22	1.29
1843336--1843385	18	2.6	19	81	9	57	66	4	4	26	1.27
1843352--1843391	20	2.0	20	86	13	57	62	5	5	27	1.37
1844472--1844514	21	2.0	22	81	4	52	53	0	4	41	1.21
1845738--1845795	16	3.7	16	80	19	77	67	0	0	32	0.91
1845740--1845805	30	2.1	32	91	5	109	69	0	0	30	0.88
1845740--1845795	11	5.4	10	76	20	53	69	0	0	30	0.89
1845749--1845796	15	3.3	14	73	21	53	70	0	0	29	0.87
1847425--1847476	21	2.5	21	90	6	79	50	0	0	50	1.00
1847425--1847476	22	2.5	22	93	6	90	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1847461--1847512	14	3.6	14	75	10	50	57	0	0	42	0.98
1847449--1847520	30	2.4	30	83	4	83	55	0	0	44	0.99
1847464--1847502	16	2.4	16	86	0	51	61	0	0	38	0.96
1848507--1848531	7	3.6	7	100	0	50	28	0	0	72	0.86
1861244--1861291	25	2.0	24	95	4	87	20	31	8	39	1.82
1866360--1866409	21	2.4	20	76	6	55	68	6	4	22	1.29
1866356--1866405	18	2.6	19	81	9	57	66	4	4	26	1.27
1866372--1866411	20	2.0	20	86	13	57	62	5	5	27	1.37
1867477--1867519	21	2.0	22	81	4	52	53	0	4	41	1.21
1868741--1868798	16	3.7	16	80	19	77	67	0	0	32	0.91
1868743--1868808	30	2.1	32	91	5	109	69	0	0	30	0.88
1868743--1868798	11	5.4	10	76	20	53	69	0	0	30	0.89
1868752--1868799	15	3.3	14	73	21	53	70	0	0	29	0.87
1871019--1871067	24	2.0	25	84	4	64	8	16	0	75	1.03
1871582--1871608	12	2.2	12	100	0	54	51	0	0	48	1.00
1871630--1871680	18	2.8	18	80	11	59	41	0	0	58	0.98
1872186--1872260	20	3.8	19	74	8	69	50	0	0	49	1.00
1872189--1872269	29	2.8	28	81	10	92	51	0	0	48	1.00
1872200--1872269	29	2.5	28	83	4	95	52	0	0	47	1.00
1872322--1872422	30	3.3	29	82	10	105	52	1	0	45	1.12
1872322--1872422	29	3.3	31	80	16	95	52	1	0	45	1.12
1873854--1873914	21	2.9	21	78	9	70	44	3	6	45	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1875755--1875985	24	10.0	23	71	20	128	23	6	1	69	1.18
1875848--1876004	5	29.6	5	73	19	108	19	5	1	73	1.08
1875855--1876017	51	3.3	47	76	19	129	19	5	1	73	1.13
1875848--1875935	32	2.9	32	82	12	105	20	3	0	76	0.93
1876552--1876955	144	2.8	143	81	5	431	35	11	10	42	1.76
1890558--1890596	17	2.3	17	81	0	51	23	12	15	48	1.79
1891911--1891961	19	2.7	19	85	8	61	13	7	1	76	1.09
1892080--1892323	117	2.0	121	84	7	318	50	5	6	36	1.53
1894892--1894917	2	13.0	2	100	0	52	50	0	0	50	1.00
1906379--1906423	21	2.2	21	88	4	65	24	0	33	42	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77