genome.fa.s179.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  61  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12289257--12289381	54	2.3	54	83	8	148	60	2	4	33	1.29
12289249--12289428	78	2.3	79	78	10	208	60	1	4	33	1.26
12289252--12289449	17	11.6	17	67	20	85	59	1	4	34	1.25
12289287--12289499	24	9.2	24	73	16	125	60	1	3	33	1.25
12289257--12289407	54	2.8	54	81	8	139	59	1	4	33	1.29
12289404--12289467	19	3.3	19	77	14	60	65	1	1	31	1.11
12304678--12304732	12	4.3	13	78	17	62	65	0	0	34	0.93
12309881--12309922	22	1.9	22	100	0	84	19	21	23	35	1.96
12312019--12312169	81	1.9	80	82	8	189	42	11	9	36	1.74
12319651--12319696	2	23.5	2	84	4	58	43	0	4	52	1.21
12322462--12322521	30	2.0	30	87	6	86	53	1	8	36	1.41
12323344--12323370	14	1.9	14	100	0	54	22	3	0	74	0.98
12324769--12324805	2	18.5	2	88	0	56	43	0	5	51	1.24
12325092--12325138	3	15.7	3	95	0	85	29	0	0	70	0.88
12326742--12326787	2	23.5	2	84	4	58	52	4	0	43	1.21
12327745--12327804	28	2.1	29	96	3	113	23	20	0	56	1.42
12327855--12327881	2	13.5	2	100	0	54	51	0	0	48	1.00
12328315--12328348	2	17.0	2	100	0	68	50	0	0	50	1.00
12328693--12328729	2	18.5	2	100	0	74	51	0	0	48	1.00
12333788--12333828	21	2.0	21	90	4	66	56	7	12	24	1.61
12334054--12334110	4	13.8	4	77	14	53	21	0	3	75	0.95
12334064--12334120	24	2.3	25	84	3	80	19	1	5	73	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12338706--12338816	8	13.8	8	78	9	84	71	0	12	16	1.15
12338726--12338817	17	5.1	17	74	16	69	71	0	11	16	1.14
12338748--12338805	30	1.9	30	89	6	91	70	0	15	13	1.17
12338740--12338835	38	2.5	39	81	6	108	75	0	12	12	1.06
12338732--12338817	9	10.4	9	81	9	71	73	0	11	15	1.10
12339817--12339870	23	2.3	23	93	0	90	50	7	12	29	1.68
12340001--12340130	24	5.5	24	84	5	158	38	3	16	41	1.66
12340001--12340161	45	3.6	44	79	8	164	38	3	17	40	1.65
12340001--12340161	24	7.1	21	80	7	70	38	3	17	40	1.65
12340181--12340286	23	4.6	24	74	9	78	38	10	13	37	1.79
12340840--12340975	18	7.4	19	73	9	95	30	12	12	44	1.79
12341903--12341952	4	12.2	4	82	4	64	26	0	2	72	0.96
12342040--12342091	27	2.0	26	85	11	70	42	3	13	40	1.62
12351270--12351298	14	2.0	15	93	6	51	0	17	0	82	0.66
12351894--12351923	4	7.2	4	92	7	51	0	23	0	76	0.78
12353358--12353391	15	2.2	16	89	5	52	44	14	2	38	1.61
12360301--12360352	4	12.8	4	83	4	68	25	0	1	73	0.94
12360301--12360361	28	2.2	28	85	5	79	26	0	3	70	1.02
12362812--12362860	20	2.3	21	79	10	55	57	12	4	26	1.53
12367451--12367564	17	6.7	17	79	9	117	25	21	18	34	1.96
12367455--12367553	34	2.8	35	92	3	155	25	21	18	35	1.95
12367450--12367564	53	2.3	49	79	11	124	25	22	18	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12369917--12369950	2	17.5	2	93	6	61	47	0	0	52	1.00
12370772--12370800	14	2.0	15	93	6	51	0	17	0	82	0.66
12371396--12371425	4	7.2	4	92	7	51	0	23	0	76	0.78
12375137--12375199	33	1.9	33	86	0	90	33	7	19	39	1.80
12378741--12378851	21	5.2	20	75	8	87	36	2	9	52	1.47
12378741--12378851	42	2.6	42	79	9	118	36	2	9	52	1.47
12379522--12379551	10	3.0	10	95	0	51	50	6	0	43	1.28
12379989--12380028	20	2.0	20	95	0	71	52	0	0	47	1.00
12380120--12380147	2	14.0	2	100	0	56	50	0	0	50	1.00
12384244--12384275	15	2.1	15	100	0	64	34	18	18	28	1.95
12387016--12387094	27	3.0	27	63	17	67	44	1	43	11	1.48
12387005--12387109	51	2.1	51	92	0	174	41	2	43	11	1.55
12396774--12396836	31	2.0	31	100	0	126	41	22	9	26	1.84
12398657--12398767	21	5.2	20	75	8	87	36	2	9	52	1.47
12398657--12398767	42	2.6	42	79	9	118	36	2	9	52	1.47
12399894--12399933	20	2.0	20	95	0	71	52	0	0	47	1.00
12401008--12401039	2	16.0	2	100	0	64	50	0	0	50	1.00
12405229--12405270	20	2.1	21	91	8	70	52	0	0	47	1.00
12405190--12405261	26	2.8	26	71	23	62	50	0	2	47	1.15
12405275--12405360	16	5.1	17	70	14	61	41	1	1	55	1.14
12405712--12405758	23	2.0	23	83	4	58	65	0	6	27	1.16
12407783--12408177	59	6.7	58	86	6	521	34	12	7	45	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12407781--12408189	119	3.5	119	89	3	630	34	12	7	45	1.70
12408194--12408339	18	7.9	18	69	22	72	72	4	3	19	1.17
12408204--12408271	5	13.4	5	79	11	68	77	2	2	16	1.00
12408295--12408348	4	13.8	4	78	18	60	74	3	1	20	1.07
12408195--12408348	16	9.5	17	68	18	64	72	4	3	20	1.17
12408295--12408348	21	2.7	19	81	15	65	74	3	1	20	1.07
12409218--12409311	23	4.0	23	77	18	88	68	1	6	24	1.20
12409218--12409429	22	9.4	22	71	18	116	68	1	5	24	1.19
12409227--12409335	45	2.4	46	80	7	116	65	0	7	26	1.25
12409343--12409384	16	2.5	17	84	7	59	80	0	9	9	0.89
12409398--12409477	25	3.2	24	76	11	74	68	2	3	25	1.18
12409436--12409505	10	6.2	12	76	15	53	71	2	2	22	1.13
12409463--12409505	5	8.4	5	80	14	52	74	2	2	20	1.04
12409681--12409922	41	5.8	41	89	2	340	36	21	17	23	1.94
12409681--12409922	84	2.9	84	90	1	364	36	21	17	23	1.94
12409901--12409945	23	2.0	23	90	0	72	37	24	22	15	1.93
12409856--12409983	65	2.0	64	95	1	229	36	24	18	20	1.95
12409920--12410042	41	3.0	41	96	2	219	37	23	17	21	1.94
12409815--12410029	106	2.0	106	94	1	378	37	23	18	20	1.94
12410313--12410417	43	2.4	44	80	12	126	33	17	11	38	1.85
12411697--12411740	13	3.5	12	81	9	52	4	15	0	79	0.89
12412352--12412398	18	2.6	18	86	10	60	38	19	6	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12416054--12416401	120	2.9	118	87	6	485	33	12	6	47	1.67
12416054--12416390	179	1.9	179	87	7	506	34	13	5	46	1.67
12416054--12416390	59	5.7	59	87	4	439	34	13	5	46	1.67
12416424--12416498	6	12.7	6	71	18	50	77	1	6	14	1.04
12416406--12416497	32	2.8	32	78	9	96	76	2	6	15	1.09
12416416--12416546	5	24.2	5	67	22	61	74	3	4	18	1.13
12416406--12416546	11	12.7	11	73	14	87	73	2	4	18	1.13
12416516--12416563	4	11.8	4	84	10	62	75	2	0	22	0.91
12417421--12417541	22	5.3	22	75	18	106	65	0	6	27	1.23
12417452--12417538	12	7.4	12	68	19	58	63	1	6	28	1.28
12417421--12417543	46	2.7	45	79	9	119	65	0	6	27	1.23
12417549--12417590	17	2.5	17	84	0	57	80	0	9	9	0.89
12417648--12417699	12	4.4	12	78	11	54	71	3	1	23	1.13
12421563--12421593	6	5.2	6	100	0	62	0	0	67	32	0.91
12423082--12423125	20	2.3	19	92	4	70	22	4	13	59	1.53
12423088--12423125	20	1.9	20	100	0	76	26	5	15	52	1.64
12423293--12423438	60	2.4	60	79	0	157	32	13	10	43	1.78
12423550--12423700	64	2.4	64	80	6	191	34	14	7	43	1.73
12423779--12423942	63	2.7	61	78	3	175	34	14	10	40	1.80
12423931--12424074	75	1.9	75	85	0	198	38	15	15	30	1.89
12431315--12431359	21	2.1	22	84	12	58	31	8	0	60	1.28
12432201--12432250	16	3.4	15	81	18	61	52	10	0	38	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12432208--12432246	12	3.2	12	92	0	60	53	10	0	35	1.35
12432201--12432252	4	13.0	4	85	0	50	51	9	0	38	1.35
12432988--12433045	15	3.8	15	72	22	50	53	0	1	44	1.10
12443101--12443143	14	3.1	14	77	9	52	60	0	0	39	0.97
12443093--12443182	41	2.3	38	80	17	98	56	1	1	41	1.14
12443229--12443264	3	12.0	3	100	0	72	33	0	0	66	0.92
12443651--12443676	5	5.2	5	100	0	52	19	0	19	61	1.35
12444866--12444953	43	2.0	43	93	0	149	47	3	7	40	1.49
12446052--12446135	32	2.6	32	75	5	80	76	2	14	7	1.10
12446755--12446891	18	7.3	18	68	20	77	55	1	2	40	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77