genome.fa.s179.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16099665

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   

This is table  64  of  77  ( 9228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12824589--12824707	19	5.9	19	68	23	59	70	0	2	26	1.05
12824583--12824680	16	6.3	15	68	19	58	70	1	3	25	1.08
12824585--12824803	7	31.3	7	71	16	93	68	0	3	27	1.13
12824604--12824761	48	3.3	47	80	16	164	67	1	4	27	1.18
12824642--12824787	77	1.9	81	84	12	209	63	1	4	30	1.24
12824593--12824787	77	2.6	78	81	12	203	66	1	4	28	1.17
12824780--12824808	13	2.1	14	93	6	51	79	3	0	17	0.87
12826423--12826494	30	2.4	30	76	17	87	22	2	22	52	1.59
12826507--12826551	22	2.0	22	95	0	81	37	4	17	40	1.70
12826518--12826582	30	2.2	30	85	0	85	35	4	16	43	1.69
12833474--12833508	12	2.8	12	95	4	61	40	0	0	60	0.97
12833528--12833565	19	2.1	19	85	5	51	36	0	5	57	1.21
12833760--12833794	16	2.2	16	89	0	52	60	8	2	28	1.41
12834038--12834064	5	5.4	5	100	0	54	81	0	0	18	0.69
12843114--12843164	23	2.2	24	82	10	61	41	5	11	41	1.66
12846765--12846801	11	3.3	11	85	7	56	59	2	8	29	1.40
12846834--12847083	137	1.8	138	88	2	387	29	11	9	50	1.69
12846821--12847139	137	2.3	137	82	8	364	27	10	10	52	1.67
12848273--12848316	8	6.0	7	80	19	54	81	2	13	2	0.88
12849995--12850075	22	3.7	22	77	9	85	29	11	18	40	1.85
12850411--12850566	22	7.1	22	74	4	145	39	16	11	32	1.85
12850411--12850566	44	3.5	44	85	3	197	39	16	11	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12850411--12850566	66	2.4	66	81	2	170	39	16	11	32	1.85
12851029--12851136	41	2.6	41	80	11	112	34	14	12	37	1.85
12851064--12851216	41	3.7	41	77	10	127	36	14	15	33	1.87
12865245--12865284	21	1.9	21	89	0	62	37	7	5	50	1.53
12866665--12866731	32	2.1	32	83	10	84	38	17	13	29	1.88
12866665--12866814	82	1.8	81	84	4	203	36	18	16	29	1.92
12866807--12866886	22	3.6	22	78	6	81	35	18	17	28	1.94
12867131--12867275	34	4.3	34	74	10	127	37	17	12	32	1.88
12867142--12867370	100	2.3	100	85	6	295	37	17	12	32	1.87
12867346--12867429	34	2.5	34	75	9	84	45	17	8	28	1.78
12867518--12867610	33	2.8	33	82	8	100	30	16	10	43	1.82
12867529--12867610	34	2.5	31	84	13	101	29	18	10	41	1.84
12867899--12868376	35	13.7	35	69	7	193	21	19	9	50	1.75
12867975--12868240	70	3.8	70	74	4	230	21	19	10	48	1.78
12867925--12868376	140	3.2	142	77	8	392	21	19	9	50	1.75
12867922--12868463	140	3.9	140	75	7	329	21	18	9	50	1.74
12868604--12868630	6	4.5	6	100	0	54	85	0	0	14	0.61
12868896--12868938	23	1.9	23	85	4	61	34	2	4	58	1.32
12878299--12878331	17	2.0	17	94	5	59	36	6	0	57	1.23
12887115--12887145	11	2.8	11	100	0	62	19	0	29	51	1.47
12887170--12887326	52	3.0	52	87	3	201	40	8	24	26	1.83
12887802--12887917	31	3.7	31	82	4	153	26	20	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12887911--12887970	25	2.4	25	80	5	68	40	5	33	21	1.75
12888253--12888283	11	2.8	11	100	0	62	19	0	29	51	1.47
12888308--12888464	52	3.0	52	87	3	201	40	8	24	26	1.83
12892166--12892198	3	10.7	3	93	6	57	30	0	0	69	0.88
12899639--12899664	11	2.4	11	100	0	52	84	0	0	15	0.62
12903649--12903688	20	2.0	20	85	9	55	82	2	15	0	0.77
12903651--12903687	19	1.9	19	88	0	56	83	2	13	0	0.74
12905550--12905979	42	10.0	42	77	7	364	25	13	15	45	1.83
12905572--12905669	50	2.0	50	87	0	142	22	14	13	50	1.77
12906703--12906740	14	2.6	15	84	16	53	55	0	44	0	0.99
12907023--12907080	17	3.5	15	75	13	53	20	1	5	72	1.13
12907016--12907061	13	3.7	13	85	5	60	21	2	4	71	1.14
12907016--12907086	21	3.4	21	77	9	58	18	4	4	73	1.16
12907017--12907077	21	2.9	21	80	4	70	19	1	4	73	1.10
12907301--12907332	9	3.7	9	95	4	57	78	0	0	21	0.76
12907097--12907497	210	1.9	205	80	9	465	48	7	9	34	1.65
12917297--12917325	14	2.1	14	100	0	58	58	0	0	41	0.98
12922149--12922265	58	2.0	58	98	0	225	16	6	22	54	1.65
12926213--12926340	22	5.7	22	74	9	114	50	6	7	35	1.57
12926223--12926322	47	2.1	47	83	7	123	51	7	8	34	1.58
12926423--12926522	22	4.5	22	70	9	78	50	7	7	36	1.57
12926634--12926803	22	7.8	21	75	6	117	48	8	7	35	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12926667--12926795	43	3.0	44	75	8	120	48	6	8	36	1.61
12926673--12926823	44	3.5	43	75	8	126	47	7	8	36	1.62
12926736--12926821	22	3.9	22	81	3	84	47	8	8	36	1.63
12928657--12928702	23	2.0	24	86	4	67	45	10	2	41	1.51
12929453--12929521	21	3.3	21	80	8	68	46	13	10	30	1.75
12929495--12929548	27	2.0	27	85	0	72	59	9	1	29	1.39
12939529--12939559	16	1.9	16	100	0	62	38	12	32	16	1.86
12946939--12946988	18	2.8	18	88	11	84	24	30	14	32	1.94
12946939--12947019	36	2.2	36	84	4	101	20	27	18	33	1.96
12946939--12946994	18	3.1	17	85	10	76	23	30	14	32	1.94
12952678--12952777	10	9.2	11	69	18	50	19	4	2	75	1.07
12952687--12952738	20	2.6	19	82	8	59	23	1	1	73	1.04
12952711--12952844	36	3.6	36	75	16	132	25	4	1	68	1.17
12952858--12952916	18	3.2	18	78	4	64	27	5	6	61	1.43
12953468--12953509	18	2.3	18	84	12	59	57	0	42	0	0.99
12953829--12953879	15	3.0	18	72	21	56	23	5	0	70	1.09
12953829--12953899	32	2.2	31	82	9	81	22	5	0	71	1.06
12953958--12954184	60	3.7	60	78	11	255	43	7	14	35	1.72
12953923--12954186	122	2.2	118	88	6	381	44	7	13	34	1.73
12966241--12966278	16	2.4	16	100	0	76	50	23	0	26	1.50
12968340--12968389	18	2.8	18	88	11	84	24	30	14	32	1.94
12968340--12968420	36	2.2	36	84	4	101	20	27	18	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12968340--12968395	18	3.1	17	85	10	76	23	30	14	32	1.94
12974081--12974189	6	16.8	6	71	17	51	18	3	1	76	1.03
12974081--12974189	13	8.4	12	69	18	51	18	3	1	76	1.03
12974234--12974294	22	3.0	21	84	15	83	34	4	3	57	1.36
12974332--12974376	19	2.3	19	88	3	63	15	2	2	80	0.92
12974874--12974910	15	2.4	16	82	13	51	59	0	40	0	0.97
12975242--12975306	10	6.3	10	73	23	55	20	4	0	75	0.98
12975237--12975306	22	3.2	21	80	15	72	20	4	0	75	0.96
12975318--12975593	59	4.5	59	78	11	281	43	7	14	35	1.73
12986001--12986048	9	5.9	8	92	7	71	79	0	12	8	0.94
12986002--12986054	8	6.1	9	89	10	76	77	0	13	9	0.99
12986001--12986054	17	3.2	17	85	15	76	75	0	14	9	1.03
12987039--12987259	42	5.1	42	86	6	273	25	19	20	34	1.96
12987039--12987259	87	2.6	84	82	9	275	25	19	20	34	1.96
12987443--12987564	6	19.3	6	72	15	70	21	2	1	74	1.02
12987444--12987559	13	8.9	12	68	20	65	21	2	1	74	1.03
12987444--12987556	26	4.3	25	76	13	86	22	2	1	73	1.05
12987463--12987564	9	11.3	9	74	17	79	22	1	0	74	0.98
12987457--12987565	37	3.0	37	78	16	104	22	2	0	73	1.02
12987466--12987573	33	3.2	33	75	15	78	23	2	0	73	1.02
12987465--12987579	62	1.9	59	85	7	158	24	2	0	72	1.03
12987465--12987602	62	2.2	60	81	8	152	25	3	0	70	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12987467--12987601	6	22.3	6	69	16	57	25	3	0	69	1.10
12987545--12987646	46	2.2	45	83	10	118	29	5	1	62	1.29
12987616--12987674	18	3.0	20	79	18	70	33	5	3	57	1.37
12987697--12987751	14	3.9	14	76	17	51	21	0	1	76	0.88
12987699--12987743	17	2.6	18	86	10	51	22	0	2	75	0.91
12987695--12987761	25	2.7	24	81	9	71	19	1	1	77	0.92
12988623--12988679	20	2.8	19	80	15	62	15	3	0	80	0.84
12988624--12988698	26	2.8	27	76	17	84	17	4	0	78	0.90
12988624--12988701	21	4.0	19	77	19	81	17	3	0	78	0.90
12988623--12988698	19	4.3	19	70	21	58	17	3	0	78	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77