genome.fa.s7.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 ID=Chr07-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  60982465

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  102  of  204  ( 24458 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31208811--31208980	88	1.9	89	86	3	245	28	14	17	39	1.89
31209652--31209879	27	8.4	27	80	10	216	43	19	16	19	1.88
31209652--31209879	82	2.8	81	82	2	253	43	19	16	19	1.88
31209857--31209912	27	2.1	27	86	6	78	35	17	17	28	1.93
31209652--31209879	54	4.2	54	81	6	264	43	19	16	19	1.88
31214294--31214341	12	3.9	12	72	5	51	66	2	6	25	1.26
31215770--31215812	18	2.3	19	80	8	52	74	6	9	9	1.22
31218126--31218171	21	2.3	20	78	14	51	32	4	17	45	1.68
31228575--31228619	22	2.0	22	83	8	56	40	4	0	55	1.20
31229002--31229038	18	2.0	19	89	5	58	5	43	0	51	1.24
31229278--31229323	21	2.3	20	78	14	51	30	6	17	45	1.73
31241457--31241549	44	2.1	45	93	2	161	31	30	9	29	1.89
31247328--31247575	50	4.9	49	86	5	289	22	30	20	26	1.99
31250091--31250159	22	3.1	22	75	10	61	73	0	21	4	1.00
31250894--31250931	20	2.0	20	89	5	60	39	26	10	23	1.87
31258099--31258150	24	2.2	24	86	6	70	34	7	5	51	1.54
31258981--31259005	13	1.9	13	100	0	50	16	24	44	16	1.86
31259572--31259761	105	1.8	105	84	5	260	27	0	27	43	1.59
31259656--31259710	14	3.9	14	78	0	56	20	0	43	36	1.52
31259658--31259722	28	2.3	28	81	0	67	21	0	38	40	1.54
31259827--31259855	15	1.9	15	100	0	58	31	0	41	27	1.56
31262037--31262098	31	2.0	31	93	0	106	11	17	24	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31265009--31265272	43	6.2	43	83	2	282	20	17	33	28	1.95
31266591--31266642	24	2.2	24	92	0	86	34	5	7	51	1.54
31269682--31269726	18	2.6	16	82	10	54	17	35	0	46	1.49
31271437--31271481	23	2.0	23	86	8	65	37	22	20	20	1.94
31275332--31275400	26	2.7	26	86	2	86	34	18	7	39	1.79
31275344--31275403	26	2.3	26	91	0	93	33	16	8	41	1.78
31279872--31279949	22	3.5	22	92	0	120	33	12	25	28	1.93
31283727--31283786	30	2.0	31	83	3	77	45	0	35	20	1.51
31286549--31286609	25	2.4	25	78	10	63	37	3	1	57	1.25
31289620--31289646	14	1.9	14	100	0	54	37	22	25	14	1.93
31293052--31293085	17	2.0	18	88	11	54	41	11	0	47	1.40
31293162--31293235	37	2.0	37	100	0	148	40	21	2	35	1.68
31300685--31301288	27	22.3	27	81	5	610	40	20	18	20	1.92
31301114--31301288	79	2.2	81	83	6	198	41	19	20	19	1.91
31300685--31301288	222	2.8	214	84	5	741	40	20	18	20	1.92
31304437--31304498	27	2.3	27	80	5	72	24	25	16	33	1.95
31304710--31304814	45	2.3	45	86	0	147	24	18	9	47	1.78
31307756--31307806	20	2.5	20	87	0	66	41	13	19	25	1.88
31307771--31307820	20	2.5	20	90	0	73	48	8	12	32	1.69
31307789--31307829	20	2.0	20	85	0	55	48	7	7	36	1.59
31307803--31307869	20	3.3	20	80	0	80	43	8	13	34	1.75
31311466--31311534	10	6.8	10	76	14	52	34	0	4	60	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31311435--31311491	10	5.9	10	80	15	59	31	0	8	59	1.28
31311465--31311537	20	3.6	19	72	22	60	32	0	5	61	1.19
31312948--31312978	14	2.2	14	94	0	53	45	6	0	48	1.28
31313260--31313292	16	2.0	17	88	5	50	45	9	0	45	1.35
31313245--31313298	28	2.0	28	82	7	67	46	9	1	42	1.46
31314181--31314224	16	2.9	15	76	6	52	59	4	0	36	1.18
31315713--31315764	26	2.0	26	88	0	77	46	3	3	46	1.39
31315741--31315797	21	2.7	21	83	0	60	38	1	1	57	1.19
31316466--31316545	23	3.4	23	70	29	78	45	6	2	46	1.42
31316489--31316576	26	3.5	26	66	29	64	39	4	1	54	1.28
31316458--31316557	48	2.1	49	98	1	193	45	6	2	47	1.39
31321179--31321233	28	2.0	28	88	0	83	27	20	23	29	1.99
31321340--31321436	26	3.7	26	80	5	97	36	18	23	21	1.95
31321353--31321400	14	3.6	14	73	21	57	35	12	25	27	1.92
31321624--31321793	27	6.3	27	81	9	161	17	18	18	45	1.85
31321624--31321793	54	3.2	54	80	7	186	17	18	18	45	1.85
31321625--31321793	81	2.1	80	85	3	223	17	18	18	46	1.85
31330544--31330740	43	4.6	42	90	3	279	30	25	17	26	1.97
31330544--31330776	86	2.7	87	85	7	307	29	26	17	26	1.98
31338559--31338656	21	4.7	21	85	10	121	35	8	15	40	1.77
31351995--31352031	6	6.2	6	93	0	65	45	16	0	37	1.47
31353912--31353940	12	2.4	12	100	0	58	17	0	6	75	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31355227--31355267	8	5.1	8	100	0	82	24	0	0	75	0.80
31356759--31356787	2	14.5	2	100	0	58	0	0	48	51	1.00
31358780--31358830	26	2.0	26	88	0	75	31	23	19	25	1.98
31360141--31360184	22	1.9	23	86	9	63	56	0	9	34	1.31
31365993--31366058	3	22.0	3	90	0	105	33	4	0	62	1.16
31366335--31366377	21	2.0	21	86	9	59	41	6	0	51	1.29
31366346--31366386	19	2.2	19	95	0	73	39	7	0	53	1.29
31366329--31366386	19	2.6	22	84	15	68	39	8	0	51	1.33
31368422--31368466	19	2.3	20	75	20	51	26	22	8	42	1.83
31371048--31371181	45	2.9	46	86	4	191	43	17	25	13	1.86
31371047--31371181	47	3.0	46	87	3	193	42	17	25	13	1.86
31372454--31372909	177	2.6	177	82	1	538	29	16	24	29	1.97
31372454--31372909	88	5.1	89	82	1	497	29	16	24	29	1.97
31372789--31372979	89	2.1	89	91	0	301	30	15	25	28	1.96
31372454--31372953	133	3.8	133	80	2	567	29	16	24	29	1.97
31375059--31375144	19	4.3	20	78	10	86	34	8	2	54	1.43
31380456--31380565	39	2.8	41	76	9	120	33	20	20	26	1.96
31380620--31380906	41	7.0	41	87	0	412	16	20	32	31	1.95
31381262--31381304	22	2.0	23	86	9	63	39	2	2	55	1.25
31381530--31381619	14	6.4	14	72	12	67	20	2	27	50	1.60
31381655--31381706	20	2.4	21	87	9	70	21	0	30	48	1.51
31381752--31381796	14	3.2	14	78	12	56	26	0	22	51	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31382748--31382790	21	2.0	21	81	0	50	27	44	4	23	1.73
31382828--31382853	4	6.5	4	100	0	52	0	73	0	26	0.84
31382973--31383005	9	3.7	9	91	0	57	33	12	27	27	1.92
31385486--31385527	22	1.9	22	95	0	75	40	28	21	9	1.84
31388408--31388450	5	8.0	5	80	14	50	76	0	2	20	0.89
31388409--31388450	12	3.8	11	84	9	59	78	0	2	19	0.86
31395548--31395594	24	2.0	24	83	8	60	61	6	14	17	1.53
31397025--31397078	21	2.5	21	82	11	56	50	11	1	37	1.49
31406036--31406454	222	1.9	219	85	6	578	32	7	30	29	1.85
31412879--31412910	13	2.4	14	85	15	50	25	0	0	75	0.81
31413002--31413048	24	1.9	25	91	4	78	38	4	2	55	1.31
31418428--31418470	23	1.9	22	86	13	61	74	0	11	13	1.07
31419611--31420250	50	12.8	50	71	3	446	32	23	19	24	1.97
31419611--31420274	100	6.7	100	86	2	877	32	23	19	24	1.97
31419611--31420250	200	3.2	200	91	1	980	32	23	19	24	1.97
31430649--31430914	27	10.2	27	73	13	155	19	16	24	39	1.91
31430721--31430914	54	3.6	54	81	2	194	17	15	25	40	1.90
31430733--31430925	81	2.4	81	82	3	246	19	17	22	40	1.91
31430733--31430925	27	7.2	27	78	5	176	19	17	22	40	1.91
31436380--31436468	30	3.0	30	88	0	124	25	32	21	20	1.97
31448167--31448216	26	1.9	26	91	0	82	26	24	20	30	1.98
31453486--31453512	5	5.4	5	100	0	54	77	0	22	0	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31462579--31462621	16	2.7	16	88	0	50	25	13	46	13	1.81
31462586--31462624	16	2.4	16	95	0	69	25	10	48	15	1.76
31462986--31463011	6	4.3	6	100	0	52	69	0	0	30	0.89
31465278--31465445	23	7.3	23	81	0	183	32	23	19	25	1.97
31465278--31465445	46	3.7	46	87	0	237	32	23	19	25	1.97
31465278--31465440	69	2.4	69	86	0	218	32	23	19	24	1.97
31467366--31467410	22	2.0	23	86	4	65	55	4	2	37	1.32
31469764--31469806	22	2.0	22	90	4	70	25	27	37	9	1.87
31471316--31471402	6	14.5	6	90	0	138	2	1	67	28	1.10
31475079--31475121	18	2.4	18	81	11	52	34	4	0	60	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204