genome.fa.s7.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 ID=Chr07-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  60982465

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  110  of  204  ( 24458 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33419615--33419743	51	2.5	52	87	3	190	26	13	31	28	1.94
33421436--33421484	24	2.1	23	85	7	64	44	22	12	20	1.84
33423216--33423358	43	3.4	43	80	8	125	35	26	16	21	1.94
33423216--33423364	42	3.5	42	81	8	151	35	26	15	22	1.94
33423296--33423399	42	2.5	42	88	0	154	38	25	13	22	1.91
33423402--33423592	41	4.7	41	85	2	224	21	23	21	32	1.98
33423634--33423684	19	2.6	20	73	14	52	33	19	0	47	1.50
33431186--33431289	41	2.5	41	87	0	136	25	25	19	30	1.98
33433745--33433781	16	2.3	17	86	9	51	43	24	0	32	1.55
33435294--33435327	5	6.8	5	100	0	68	79	0	0	20	0.73
33436853--33436902	21	2.3	22	82	3	57	48	6	40	6	1.52
33440831--33441243	30	13.8	30	78	7	322	23	23	14	38	1.92
33440844--33441068	89	2.5	89	92	0	360	21	24	14	40	1.90
33448591--33448670	30	2.7	30	82	0	97	23	28	6	41	1.79
33448617--33448691	30	2.5	30	84	2	89	20	28	10	41	1.85
33452713--33452767	27	2.1	25	83	6	65	20	10	10	58	1.62
33455828--33455871	21	2.1	21	100	0	88	38	9	13	38	1.77
33455827--33455882	21	2.8	19	87	10	85	37	8	16	37	1.80
33456074--33456112	19	2.0	21	85	10	55	15	10	5	69	1.34
33456500--33456655	20	7.6	20	69	13	68	33	9	3	53	1.50
33456494--33456654	50	3.2	47	75	16	128	34	9	3	52	1.49
33456572--33456615	18	2.4	18	81	7	54	38	4	4	52	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33456436--33456654	104	2.1	106	89	3	334	34	8	4	53	1.50
33460281--33460329	25	2.0	25	87	0	71	38	14	14	32	1.86
33460295--33460343	25	2.0	25	83	0	62	34	14	20	30	1.92
33466290--33466415	39	3.2	39	64	16	107	34	9	14	42	1.78
33466269--33466427	78	2.0	78	98	0	309	35	10	11	42	1.77
33470274--33470307	17	2.0	17	88	11	52	20	14	0	64	1.28
33470859--33470899	19	2.2	19	86	8	57	58	34	0	7	1.26
33474634--33474680	19	2.5	19	86	6	60	25	21	10	42	1.85
33477445--33477486	14	3.0	14	83	10	50	80	7	9	2	0.97
33477922--33477966	19	2.4	19	85	10	58	84	2	13	0	0.72
33477921--33477979	12	5.0	12	76	17	52	79	3	16	0	0.86
33477921--33477976	16	3.4	16	76	16	51	80	3	16	0	0.85
33477922--33477982	22	2.9	19	80	20	61	81	3	14	0	0.80
33478298--33478479	97	1.9	93	87	6	267	28	15	8	47	1.75
33478952--33479009	24	2.4	24	91	0	98	32	8	25	32	1.86
33479290--33479386	50	1.9	50	87	0	140	27	22	25	23	2.00
33479289--33479396	50	2.2	50	82	0	135	25	25	25	25	2.00
33479362--33479740	50	7.6	50	68	4	201	31	22	20	25	1.98
33479312--33479740	100	4.3	100	82	2	495	31	22	20	25	1.98
33479360--33479719	199	1.8	200	86	0	533	32	22	20	25	1.98
33479742--33480085	40	8.4	40	81	9	383	30	24	21	23	1.99
33479742--33480090	82	4.3	82	92	0	583	30	24	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33489498--33489527	16	1.9	16	93	6	53	20	10	16	53	1.71
33489526--33489595	33	2.1	33	81	0	77	38	10	4	47	1.57
33489970--33489997	2	14.0	2	100	0	56	50	0	0	50	1.00
33494778--33494812	18	2.1	16	89	10	52	51	20	0	28	1.47
33496464--33496751	86	3.3	86	77	2	267	41	19	16	22	1.90
33496514--33496871	43	8.4	43	69	7	183	39	20	17	21	1.92
33499386--33499419	3	11.3	3	93	0	59	35	0	29	35	1.58
33502946--33503078	54	2.5	55	79	13	145	17	33	26	22	1.96
33506383--33506458	11	6.8	11	72	26	54	55	1	2	40	1.22
33509471--33509511	16	2.6	16	96	0	73	46	4	2	46	1.37
33513809--33513867	15	3.7	15	73	20	57	11	22	1	64	1.35
33513824--33513883	18	3.5	18	75	13	72	10	21	1	66	1.30
33513809--33513884	33	2.3	33	93	0	125	10	21	2	65	1.35
33520756--33520855	26	3.7	27	75	12	64	36	2	1	61	1.14
33521015--33521094	42	1.9	42	92	0	133	38	1	7	52	1.38
33522227--33522260	16	2.1	16	88	0	50	70	2	0	26	1.01
33522383--33522453	36	1.9	38	88	5	110	35	7	0	57	1.26
33524397--33524447	8	6.5	8	73	13	52	60	0	0	39	0.97
33524792--33524907	57	2.0	57	100	0	232	27	6	9	56	1.57
33529797--33529835	20	2.0	19	85	5	51	38	20	30	10	1.86
33540180--33540241	3	20.7	3	100	0	124	67	0	32	0	0.91
33548762--33548808	18	2.6	19	80	6	62	23	34	8	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33560742--33560782	21	2.0	21	85	4	57	19	21	19	39	1.93
33562962--33563030	21	3.3	21	67	25	56	27	33	5	33	1.81
33562963--33563064	41	2.5	41	98	0	195	27	29	5	37	1.80
33562984--33563050	20	3.3	20	66	25	59	26	29	4	38	1.76
33566349--33566410	14	4.4	14	74	8	63	37	12	9	40	1.77
33572362--33572387	10	2.6	10	100	0	52	69	11	0	19	1.18
33574991--33575096	49	2.1	50	84	5	142	32	16	23	28	1.96
33575213--33575312	29	3.4	29	71	15	98	32	13	27	28	1.93
33575215--33575353	59	2.4	59	87	4	194	34	13	25	26	1.93
33575213--33575331	29	4.0	30	70	10	93	35	11	26	26	1.91
33579676--33579785	27	4.1	27	72	6	116	34	5	14	45	1.68
33579742--33579787	14	3.4	14	75	6	58	34	4	13	47	1.62
33587819--33588664	50	17.1	50	73	6	623	26	20	21	31	1.98
33587832--33588655	100	8.3	100	91	0	1248	26	20	21	31	1.98
33592567--33592632	27	2.5	27	85	4	82	34	24	19	21	1.96
33595320--33595567	99	2.4	102	82	6	297	23	28	20	27	1.99
33595321--33595567	50	4.8	50	84	5	273	23	28	21	27	1.99
33602916--33603036	50	2.4	50	80	2	127	19	26	23	29	1.98
33604933--33604974	22	1.9	22	85	9	59	21	14	23	40	1.90
33618327--33618369	3	14.3	3	100	0	86	67	0	0	32	0.91
33623941--33623969	14	2.1	14	100	0	58	27	37	6	27	1.82
33628372--33628412	20	2.2	19	86	8	57	60	17	14	7	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33630930--33631028	23	4.3	23	85	0	135	29	26	21	23	1.99
33630930--33631028	46	2.2	46	94	0	171	29	26	21	23	1.99
33631252--33631292	18	2.3	18	88	12	59	43	19	0	36	1.51
33631477--33631534	29	2.0	30	82	3	73	29	22	5	43	1.75
33639177--33639205	12	2.3	13	94	5	51	62	13	10	13	1.55
33647896--33647991	46	2.1	46	86	3	131	33	22	20	22	1.97
33652568--33652594	14	1.9	14	100	0	54	62	0	0	37	0.95
33652617--33652660	23	1.9	23	85	0	61	63	4	4	27	1.33
33652912--33652946	5	7.0	5	100	0	70	40	0	0	60	0.97
33662307--33662347	21	2.0	21	90	0	64	31	14	21	31	1.94
33662494--33662598	44	2.5	40	80	15	124	36	3	25	34	1.74
33663586--33663616	10	3.0	10	95	4	53	80	0	19	0	0.71
33663964--33664001	20	1.9	20	84	10	51	65	0	5	28	1.14
33666497--33666556	15	4.0	15	82	0	75	23	8	26	41	1.82
33668855--33668903	21	2.3	21	85	0	62	38	30	8	22	1.83
33668908--33668949	21	2.0	21	90	0	66	30	30	21	16	1.95
33679340--33679584	50	4.8	50	79	6	217	27	20	28	23	1.99
33680081--33680123	21	2.0	21	100	0	86	27	9	20	41	1.83
33684563--33684597	18	1.9	18	88	0	52	65	5	0	28	1.15
33688710--33689105	51	7.6	51	73	13	251	28	15	26	29	1.96
33688706--33688943	102	2.3	102	89	2	354	28	14	26	30	1.95
33688706--33688986	102	2.8	102	84	5	349	28	15	26	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33688923--33689047	61	2.0	61	98	0	241	28	17	27	27	1.98
33688973--33688997	11	2.3	11	100	0	50	28	12	32	28	1.92
33688984--33689103	49	2.4	50	92	1	206	28	16	25	29	1.97
33696396--33696572	51	3.5	50	73	10	162	28	13	25	32	1.94
33696392--33696583	102	1.9	102	90	2	305	28	14	26	30	1.95
33706008--33706069	31	2.0	31	96	0	115	17	6	37	38	1.76
33707276--33707413	39	3.5	39	89	0	204	29	2	21	47	1.62
33718604--33718638	18	1.9	18	88	0	52	51	5	34	8	1.56
33722015--33722043	15	1.9	15	100	0	58	41	0	24	34	1.55
33731414--33731475	22	2.8	22	78	4	63	46	16	19	17	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204