genome.fa.s7.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 ID=Chr07-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  60982465

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  152  of  204  ( 24458 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45697700--45697781	40	2.0	41	83	9	105	39	12	3	45	1.59
45703155--45703229	13	5.8	13	83	0	96	28	9	22	40	1.85
45703153--45703229	39	2.0	39	86	0	109	27	9	23	40	1.84
45706555--45706632	26	3.0	26	96	1	140	42	19	38	0	1.51
45709425--45709455	9	3.4	9	90	0	53	38	22	12	25	1.90
45710010--45710053	22	2.0	22	100	0	88	13	27	13	45	1.81
45734313--45734834	44	11.9	44	85	0	605	24	26	19	29	1.99
45739930--45739962	10	3.4	10	91	4	50	72	3	0	24	0.98
45740440--45740464	6	4.2	6	100	0	50	48	0	0	52	1.00
45740456--45740495	21	1.9	21	84	0	53	42	0	0	57	0.98
45740454--45740501	21	2.3	21	74	0	51	45	0	0	54	0.99
45747593--45747626	17	2.0	17	88	0	50	52	2	0	44	1.16
45756332--45756374	21	2.0	21	95	0	77	25	9	25	39	1.85
45758286--45758313	7	4.0	7	100	0	56	14	14	28	42	1.84
45758850--45758887	19	2.0	19	94	0	67	31	28	10	28	1.90
45760708--45760748	18	2.3	18	82	0	55	60	0	0	39	0.96
45760734--45760788	28	2.0	27	82	6	67	49	3	0	47	1.19
45761999--45762028	16	1.9	16	93	6	53	66	0	0	33	0.92
45764564--45764631	28	2.5	28	80	4	86	39	7	5	47	1.56
45765573--45765607	2	17.5	2	100	0	70	48	0	0	51	1.00
45773135--45773162	10	2.8	10	100	0	56	50	10	28	10	1.71
45777603--45777658	17	3.2	18	78	12	55	66	1	3	28	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45777896--45777929	16	2.2	15	89	5	50	32	5	0	61	1.20
45778516--45778544	5	5.8	5	100	0	58	17	0	0	82	0.66
45781194--45781249	29	1.9	29	85	0	76	26	8	21	42	1.82
45784821--45784863	20	2.2	20	83	8	52	16	2	11	69	1.28
45789129--45789159	14	2.2	14	94	0	53	32	6	16	45	1.72
45794098--45794127	15	2.0	15	93	0	51	36	6	6	50	1.55
45794496--45794542	10	4.4	10	82	12	58	53	0	0	46	1.00
45798032--45798081	20	2.5	21	83	6	59	30	14	12	44	1.81
45799286--45799532	50	4.8	50	79	3	226	27	21	27	23	1.99
45802865--45802927	31	2.0	32	87	3	92	36	4	23	34	1.76
45810470--45810502	13	2.5	13	100	0	66	6	21	45	27	1.75
45813150--45813903	373	2.0	372	96	0	1400	20	14	19	45	1.85
45830784--45830945	45	3.6	45	89	0	252	45	16	17	20	1.86
45830784--45830985	45	4.5	44	85	2	235	46	15	19	18	1.85
45830779--45830985	90	2.3	90	84	3	265	46	15	18	18	1.84
45831820--45831854	16	2.1	17	89	5	54	25	0	34	40	1.56
45835554--45835607	19	2.9	18	75	8	54	68	7	9	14	1.38
45840001--45840102	41	2.5	41	90	3	161	18	22	8	50	1.75
45841102--45841144	21	2.0	21	95	0	77	34	11	4	48	1.60
45842765--45842804	19	2.1	19	100	0	80	32	17	20	30	1.95
45844219--45844255	15	2.5	15	95	0	65	51	10	13	24	1.73
45844431--45844488	23	2.5	22	88	2	80	34	17	25	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45845833--45845876	12	3.8	12	84	6	54	29	0	0	70	0.88
45845848--45845895	11	4.7	11	75	15	50	33	0	2	64	1.05
45845839--45845899	29	2.1	29	93	6	106	32	0	1	65	1.02
45861538--45861580	10	4.1	10	80	11	50	34	2	4	58	1.32
45864030--45864118	44	2.0	44	86	4	126	49	15	7	26	1.72
45869055--45869124	34	2.1	34	100	0	140	37	8	27	27	1.86
45878832--45878931	43	2.3	43	86	3	121	25	26	20	29	1.99
45879264--45879313	21	2.4	21	89	0	73	4	44	18	34	1.68
45881114--45881319	9	23.7	9	66	19	107	30	2	21	46	1.64
45881090--45881160	29	2.3	31	81	15	78	33	0	18	47	1.49
45881112--45881208	25	3.9	24	73	16	90	34	0	20	45	1.52
45881147--45881300	34	4.7	34	73	14	137	28	2	22	46	1.65
45881202--45881297	28	3.2	28	68	23	79	26	4	21	47	1.68
45881168--45881297	62	2.1	62	95	2	235	27	3	23	46	1.67
45881472--45881513	19	2.2	19	83	8	50	52	0	4	42	1.22
45881670--45881702	2	16.5	2	100	0	66	48	0	0	51	1.00
45885437--45885936	114	4.4	114	82	4	542	28	25	21	25	1.99
45887705--45887815	42	2.6	44	75	12	115	30	27	16	25	1.96
45887745--45887832	42	2.1	42	89	0	131	28	31	15	23	1.96
45890591--45890632	21	2.0	22	85	4	59	59	4	23	11	1.51
45936023--45936060	18	2.1	18	100	0	76	52	5	23	18	1.65
45940224--45940402	50	3.5	50	81	9	166	27	21	28	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45955408--45955637	20	11.5	20	89	1	327	54	1	24	20	1.52
45955567--45955637	10	7.1	10	70	17	58	47	0	26	25	1.52
45960674--45960766	48	1.9	48	93	0	159	41	21	16	20	1.90
45960976--45961036	17	3.5	17	72	16	61	47	13	13	26	1.79
45965708--45965803	48	2.0	48	91	0	156	41	21	16	19	1.90
45966025--45966078	17	2.9	19	71	20	60	46	16	12	24	1.82
45966010--45966078	36	1.9	36	93	0	120	47	14	11	26	1.78
45970548--45970596	5	9.8	5	100	0	98	38	20	0	40	1.53
45971956--45971993	18	2.1	18	85	9	51	34	10	5	50	1.59
45974200--45974241	18	2.3	18	80	8	50	45	21	2	30	1.65
45986691--45986735	21	2.1	21	84	8	56	33	26	17	22	1.96
45989804--45989936	50	2.7	50	80	9	162	21	28	22	27	1.99
45991328--45991367	21	1.9	21	94	0	71	22	20	12	45	1.84
45996625--45996663	13	3.0	13	88	0	60	2	15	0	82	0.79
45998790--45999005	45	4.8	45	87	3	301	45	18	18	17	1.86
45998789--45999055	90	3.0	90	81	2	304	44	17	17	19	1.87
45998788--45999050	135	1.9	135	85	3	359	45	17	18	19	1.86
45999151--45999242	40	2.3	40	78	10	98	44	2	13	40	1.55
46002340--46002369	15	2.0	15	100	0	60	40	6	26	26	1.81
46003650--46003690	16	2.4	18	80	8	50	24	12	21	41	1.87
46004740--46004778	5	7.8	5	100	0	78	38	20	0	41	1.53
46015448--46015498	24	2.1	24	92	7	86	47	15	3	33	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46021169--46021210	19	2.2	19	83	8	50	38	4	0	57	1.20
46023673--46023766	45	2.1	45	87	0	134	21	32	23	22	1.98
46024504--46024733	43	5.3	43	85	0	280	30	32	17	19	1.95
46029248--46029330	7	11.6	7	77	10	51	39	40	0	19	1.51
46029303--46029348	7	6.6	7	82	7	58	28	52	0	19	1.47
46029301--46029346	13	3.4	13	82	8	56	32	50	0	17	1.47
46029462--46029512	7	7.3	7	88	0	75	33	49	0	17	1.47
46029453--46029512	21	2.8	20	82	9	75	31	46	1	20	1.60
46029486--46029645	75	2.1	77	91	2	270	43	28	0	28	1.56
46029688--46029719	7	4.6	7	92	0	55	34	50	0	15	1.45
46029739--46029771	14	2.3	15	94	5	59	36	33	0	30	1.58
46030101--46030252	41	3.7	41	91	1	243	28	25	22	23	1.99
46034622--46034649	2	14.0	2	100	0	56	50	0	0	50	1.00
46034721--46034769	3	16.3	3	100	0	98	34	0	0	65	0.93
46035703--46035741	3	13.0	3	100	0	78	66	0	0	33	0.92
46035817--46035937	40	2.9	40	83	6	134	46	0	10	42	1.44
46036749--46036830	40	2.0	40	95	0	146	50	24	13	12	1.76
46040139--46040179	21	2.0	20	85	4	55	19	0	41	39	1.52
46040171--46040203	7	4.6	7	92	7	57	15	3	51	30	1.58
46040171--46040203	15	2.3	14	94	5	57	15	3	51	30	1.58
46041381--46041426	22	2.1	22	95	0	83	15	23	30	30	1.95
46044043--46044254	43	4.9	43	84	4	241	20	18	25	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46044062--46044254	87	2.2	86	86	6	257	21	19	25	33	1.97
46045306--46045339	2	16.5	2	93	6	59	47	0	2	50	1.16
46046630--46046655	4	6.5	4	100	0	52	23	0	0	76	0.78
46047334--46047366	3	11.0	3	100	0	66	33	0	0	66	0.92
46047412--46047446	18	1.9	18	88	11	54	28	8	5	57	1.52
46047450--46047493	23	2.0	21	83	16	54	31	2	4	61	1.28
46049857--46049904	22	2.1	23	84	7	62	37	10	2	50	1.49
46052408--46052640	118	2.0	118	85	0	313	43	15	13	27	1.85
46058141--46058276	41	3.3	41	75	5	123	21	14	22	41	1.89
46062154--46062197	24	1.9	22	90	9	70	36	40	0	22	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204