Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: Chr07 ID=Chr07-JGI_221_v2.0 Parameters: 2 7 7 80 10 50 1000 Length: 60982465

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  153  of  204  ( 24458 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46063280--46063337
26
2.2
26
93
0
98
39
17
3
39
1.66
46063803--46063833
16
1.9
16
100
0
62
38
3
6
51
1.44
46064614--46064688
9
9.0
9
72
25
67
45
22
0
32
1.53
46064610--46064678
16
4.8
16
70
26
64
49
20
0
30
1.49
46064614--46064677
25
2.6
25
88
9
89
48
20
0
31
1.50
46064610--46064688
41
1.9
41
87
10
117
46
21
0
31
1.51
46064639--46064678
16
2.5
16
91
0
71
50
22
0
27
1.50
46070389--46070428
19
2.0
20
85
4
55
27
0
5
67
1.11
46070576--46070909
43
7.7
43
85
5
431
17
18
31
31
1.95
46071003--46071045
22
2.0
22
90
0
68
44
27
18
9
1.80
46071844--46071869
2
13.0
2
100
0
52
50
0
0
50
1.00
46072553--46073008
125
3.6
125
86
1
626
31
23
19
25
1.98
46073001--46073301
166
1.8
168
83
4
403
34
20
18
26
1.95
46073695--46073739
23
2.0
24
86
8
67
24
6
28
40
1.80
46073694--46073745
23
2.2
24
80
10
63
23
5
26
44
1.76
46073825--46073869
13
3.4
13
84
6
63
13
2
33
51
1.53
46073888--46073954
21
3.1
21
77
10
73
17
5
43
32
1.74
46073899--46073988
14
6.3
14
74
14
58
21
5
41
32
1.76
46073901--46073961
21
2.9
21
80
7
70
18
8
40
32
1.80
46074048--46074131
14
6.1
14
70
13
57
27
4
27
40
1.76
46074611--46074708
23
4.2
23
75
11
83
24
33
3
38
1.71
46076375--46076432
30
1.9
31
92
3
100
43
13
1
41
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46076531--46076630
12
9.1
12
66
25
53
48
18
2
32
1.59
46076543--46077017
9
53.9
9
71
17
297
45
18
2
33
1.63
46076530--46076678
21
6.8
21
71
18
115
46
18
2
32
1.61
46076585--46077004
34
12.6
35
69
21
162
45
19
2
32
1.62
46076593--46077008
62
6.9
61
71
18
173
45
19
2
33
1.62
46076543--46076972
71
6.2
69
75
13
311
45
18
2
33
1.61
46076924--46077004
32
2.5
31
82
11
92
50
18
2
28
1.60
46076572--46076987
16
24.8
16
72
18
173
45
19
1
32
1.61
46076543--46077004
25
17.9
25
71
19
189
45
18
2
33
1.62
46082597--46082647
21
2.4
21
87
6
68
37
11
43
7
1.71
46082980--46083393
43
9.6
43
78
4
318
27
18
27
26
1.98
46084016--46084071
16
3.5
16
87
0
85
35
5
30
28
1.80
46084053--46084146
44
2.1
46
84
7
122
32
3
25
38
1.72
46084248--46084381
57
2.3
56
83
7
153
51
4
0
43
1.27
46084364--46084406
21
2.0
21
86
8
61
55
6
2
34
1.39
46085041--46085091
24
2.1
24
96
0
93
39
21
9
29
1.85
46089187--46089249
24
2.5
24
82
5
72
23
4
1
69
1.16
46089188--46089234
18
2.6
18
86
6
69
23
2
2
72
1.06
46089188--46089252
6
10.7
6
75
9
60
23
3
1
72
1.07
46089222--46089248
14
1.9
14
100
0
54
22
3
0
74
0.98
46091917--46091955
6
6.5
6
81
0
51
17
2
2
76
1.01
46097702--46097774
26
2.8
26
84
13
98
38
21
23
16
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46097947--46098142
27
7.3
27
85
5
220
19
21
20
38
1.94
46097963--46098142
81
2.2
81
88
3
256
18
21
21
38
1.94
46102615--46102662
25
2.0
24
84
12
62
60
4
2
33
1.27
46119936--46119974
19
2.2
18
86
9
53
33
23
10
33
1.88
46121291--46121612
77
4.1
77
79
6
310
45
12
12
29
1.79
46121288--46121575
154
1.8
156
81
9
363
45
12
12
29
1.78
46121456--46121627
83
2.1
83
79
6
188
45
13
12
28
1.79
46122331--46122394
32
2.0
32
87
0
92
53
7
9
29
1.61
46132353--46132428
36
2.1
36
82
4
91
23
39
0
36
1.55
46134297--46134336
20
2.0
20
95
0
71
5
27
25
42
1.75
46136332--46136367
18
1.9
19
88
5
56
33
19
2
44
1.65
46141190--46141236
21
2.2
22
84
3
60
44
46
4
4
1.42
46141618--46141742
27
4.6
27
73
11
103
17
15
21
45
1.85
46141606--46141742
54
2.6
53
85
6
179
18
16
20
45
1.86
46147617--46148162
284
1.9
284
87
2
792
28
24
13
33
1.93
46160673--46160775
49
2.3
41
74
22
116
33
2
26
36
1.71
46160685--46160781
49
2.0
49
97
0
185
36
4
25
34
1.75
46169468--46169561
25
3.8
26
72
8
88
29
21
20
28
1.98
46169699--46169736
17
2.2
17
100
0
76
34
18
10
36
1.85
46171255--46171367
27
4.2
27
80
3
122
17
22
18
41
1.90
46174006--46174203
102
1.9
104
91
2
328
34
26
18
21
1.96
46174526--46174583
30
1.9
30
85
0
80
29
22
6
41
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46181285--46181357
38
1.9
38
91
0
119
28
4
35
31
1.76
46185972--46186007
18
1.9
19
94
5
65
19
5
0
75
1.00
46211822--46211919
46
2.1
46
84
3
126
15
21
37
25
1.92
46212077--46212136
27
2.2
27
93
0
102
33
20
23
23
1.97
46212221--46212266
24
1.9
24
81
0
56
26
13
19
41
1.88
46212458--46212627
32
5.4
33
82
7
192
19
20
21
38
1.94
46212456--46212628
63
2.7
65
85
5
237
19
20
22
37
1.94
46212619--46212683
22
3.0
22
74
0
67
18
20
16
44
1.87
46212838--46212938
28
3.4
28
74
15
103
17
25
22
33
1.96
46220634--46220662
14
2.1
14
100
0
58
41
6
20
31
1.79
46223470--46223850
27
14.1
27
84
0
449
18
17
21
42
1.89
46224516--46224557
12
3.5
12
78
12
50
26
40
0
33
1.56
46243738--46244147
27
15.1
27
81
0
433
42
21
16
19
1.89
46246648--46246794
40
3.7
40
77
0
141
29
12
25
31
1.93
46248613--46248775
40
4.1
40
82
0
191
26
15
25
31
1.95
46251426--46251473
22
2.3
22
85
7
64
60
8
4
27
1.44
46254266--46254315
20
2.8
17
81
18
66
56
0
6
38
1.24
46254270--46254309
20
2.0
20
100
0
80
50
0
5
45
1.23
46260496--46260532
15
2.5
15
90
0
56
2
16
51
29
1.58
46260509--46260543
15
2.3
15
90
0
52
8
14
42
34
1.76
46261792--46262066
110
2.5
108
87
2
383
34
17
16
31
1.92
46261752--46262066
110
2.9
107
85
2
373
35
16
16
31
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46262692--46262831
3
47.0
3
73
1
111
57
5
4
32
1.40
46263735--46263774
20
2.0
20
95
0
71
17
25
42
15
1.88
46264359--46264462
44
2.4
44
85
3
129
30
20
18
30
1.96
46264434--46264635
41
4.8
41
71
9
154
28
19
23
29
1.98
46264353--46264725
129
2.9
129
85
1
489
28
20
20
31
1.97
46264385--46264766
44
8.8
43
71
11
207
27
20
20
30
1.98
46264783--46265007
45
5.0
45
91
0
333
29
26
17
26
1.97
46276653--46277056
108
3.8
106
86
4
528
37
18
13
30
1.89
46276653--46277075
214
2.0
211
85
5
566
37
17
13
30
1.89
46277098--46277142
21
2.2
20
84
11
56
57
2
11
28
1.45
46277251--46277291
19
2.2
19
83
16
50
68
4
9
17
1.35
46277688--46277827
3
47.0
3
68
4
59
54
7
5
33
1.50
46281275--46281373
50
2.0
50
90
5
157
62
2
16
19
1.42
46282919--46282976
19
2.7
22
84
10
68
36
8
17
37
1.80
46285635--46285679
19
2.4
19
85
7
56
26
24
11
37
1.89
46293952--46294151
45
4.4
45
83
1
231
31
17
23
29
1.96
46293987--46294153
90
1.9
90
89
0
262
29
17
23
29
1.97
46298769--46298924
73
2.2
71
85
2
204
30
23
22
23
1.99
46298769--46299227
192
2.4
186
85
6
611
27
22
24
25
2.00
46299003--46299469
114
4.1
115
88
4
658
25
21
24
28
1.99
46299686--46299923
7
33.4
7
70
12
94
18
3
34
43
1.66
46299676--46299742
22
3.0
21
80
8
80
14
5
43
35
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46299730--46299818
15
6.2
15
73
12
53
22
1
30
46
1.59
46299799--46300014
14
15.5
14
66
11
68
17
3
31
47
1.64
46300002--46300209
103
2.0
102
91
0
335
27
3
30
38
1.73
46300028--46300086
24
2.4
24
78
10
66
25
3
37
33
1.73
46302238--46302519
9
32.3
9
75
13
241
45
20
1
32
1.59
46302237--46302488
79
3.2
79
86
6
343
45
20
1
32
1.59
46302237--46302530
52
5.7
50
78
10
243
45
20
1
32
1.58
46308024--46308092
21
3.3
21
85
4
77
34
18
42
4
1.71
46308476--46308788
42
7.4
41
85
6
385
26
18
21
33
1.96
46308476--46308788
85
3.7
84
84
5
391
26
18
21
33
1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204