genome.fa.s7.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 ID=Chr07-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  60982465

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  155  of  204  ( 24458 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46631970--46632034	28	2.4	28	84	2	78	32	7	12	47	1.69
46642086--46642127	22	2.1	19	86	13	57	45	2	0	52	1.13
46642166--46642200	17	2.1	17	89	5	54	42	0	0	57	0.99
46642623--46642663	21	1.9	21	85	5	55	34	17	12	36	1.87
46646902--46646946	6	7.5	6	79	0	54	77	4	4	13	1.07
46668851--46668971	62	2.0	61	95	1	215	45	23	8	23	1.79
46669230--46669431	6	33.7	6	79	8	135	54	13	10	20	1.68
46669230--46669431	12	16.8	12	79	6	149	54	13	10	20	1.68
46669230--46669431	18	11.2	18	78	8	160	54	13	10	20	1.68
46669438--46669473	16	2.2	17	95	5	65	52	19	5	22	1.66
46670762--46671059	50	5.8	50	86	2	353	26	20	28	23	1.99
46682104--46682134	15	2.1	15	100	0	62	45	0	19	35	1.51
46699099--46699134	17	2.1	17	100	0	72	41	30	5	22	1.76
46720231--46720262	10	3.1	11	86	13	50	6	15	0	78	0.95
46720478--46720510	11	3.0	11	86	13	50	21	6	0	72	1.05
46732021--46732069	24	2.0	24	84	0	62	28	0	8	63	1.23
46738477--46738556	11	7.5	11	84	8	112	48	0	0	51	1.00
46738470--46738556	10	8.5	10	80	12	97	47	0	0	52	1.00
46738476--46738556	21	3.9	21	98	0	153	48	0	0	51	1.00
46739090--46739402	42	7.4	42	83	4	337	31	20	21	26	1.98
46739834--46739881	21	2.3	21	85	0	60	2	41	18	37	1.63
46745416--46745666	9	29.8	9	72	12	167	29	3	19	46	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46745414--46745713	25	11.9	25	77	7	234	30	3	19	47	1.65
46745417--46745506	34	2.6	36	77	10	98	28	3	23	44	1.69
46745477--46745665	41	4.8	41	75	15	173	29	3	19	48	1.64
46745577--46745624	16	3.0	16	87	0	69	29	2	18	50	1.59
46745939--46746078	43	2.9	50	67	25	131	51	5	2	41	1.35
46745985--46746017	15	2.2	15	94	0	57	57	3	0	39	1.14
46747194--46747273	40	2.0	40	85	4	108	35	5	43	16	1.69
46747227--46747278	24	2.2	24	86	6	70	36	3	40	19	1.70
46747447--46747499	22	2.5	22	96	3	99	37	26	3	32	1.74
46747460--46747536	15	5.3	14	72	7	55	40	29	1	28	1.65
46747463--46747541	29	2.7	30	82	7	92	39	29	2	29	1.70
46748083--46748889	266	3.1	266	92	3	1337	29	19	18	31	1.96
46748857--46749097	113	2.1	113	80	5	261	31	20	20	28	1.97
46748932--46749246	113	2.8	113	83	3	375	28	19	23	27	1.98
46749583--46749615	11	2.8	12	86	4	50	33	3	12	51	1.54
46750799--46750871	32	2.4	30	78	13	85	31	5	0	63	1.17
46758052--46758107	21	2.7	21	80	5	69	37	5	0	57	1.22
46758147--46758184	20	1.9	20	89	10	60	39	5	5	50	1.48
46758727--46758856	61	2.1	60	83	7	154	46	16	3	33	1.63
46759096--46759133	9	3.8	10	86	10	51	65	5	2	26	1.27
46759092--46759138	19	2.5	19	83	10	62	70	4	2	23	1.16
46759423--46759473	26	2.0	26	92	3	86	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46759444--46759501	19	3.1	19	76	14	66	31	1	0	67	1.01
46759478--46759508	16	1.9	16	93	0	53	19	3	0	77	0.90
46770202--46770257	20	2.8	20	73	10	53	66	5	0	28	1.14
46776388--46776424	17	2.1	19	90	10	60	32	0	0	67	0.91
46777378--46777465	46	1.9	46	81	9	108	38	18	21	21	1.93
46777625--46777689	22	3.0	21	77	4	58	47	16	16	18	1.83
46777790--46777843	26	2.1	26	85	0	72	38	20	16	24	1.92
46777959--46778040	24	3.4	24	82	0	101	50	21	6	21	1.71
46777971--46778069	24	4.1	24	81	0	108	48	21	6	24	1.72
46778100--46778338	27	8.8	27	70	9	146	25	18	18	37	1.94
46778102--46778256	82	1.9	81	84	6	206	24	17	20	38	1.93
46778102--46778338	81	2.9	81	77	8	212	25	18	18	37	1.93
46779223--46779272	25	2.0	25	100	0	100	44	32	4	20	1.70
46782550--46782729	40	4.6	40	77	6	179	31	24	18	25	1.97
46785681--46785715	18	1.9	18	94	0	61	22	45	8	22	1.79
46787106--46787182	34	2.3	34	86	4	102	59	0	0	40	0.97
46790213--46790248	16	2.3	15	90	4	54	61	0	5	33	1.19
46790563--46790620	22	2.6	22	81	7	64	41	17	5	36	1.72
46790599--46790635	19	1.9	19	94	0	65	32	16	13	37	1.87
46805676--46805704	6	4.8	6	100	0	58	68	0	31	0	0.89
46806210--46806264	21	2.6	22	82	5	69	34	25	10	29	1.90
46808387--46808415	14	2.1	14	100	0	58	55	13	6	24	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46814226--46814322	32	3.0	32	88	7	142	53	0	8	38	1.31
46815109--46815169	31	1.9	32	83	9	81	49	3	4	42	1.40
46815149--46815304	42	3.6	43	73	13	149	46	8	3	41	1.52
46815134--46815334	88	2.3	88	92	3	334	47	6	4	40	1.52
46815310--46815404	32	3.0	32	93	4	165	48	0	8	43	1.33
46815773--46815806	17	2.0	17	94	0	59	26	11	14	47	1.79
46816131--46816373	33	7.0	33	82	6	243	27	33	14	24	1.94
46817089--46817177	45	2.0	45	95	0	160	25	28	16	29	1.97
46822269--46822303	3	11.7	3	100	0	70	0	31	0	68	0.90
46837466--46837500	9	3.9	9	88	0	52	25	8	17	48	1.75
46837466--46837503	18	2.1	18	95	0	67	26	7	15	50	1.72
46837528--46837594	32	2.1	32	86	5	91	44	14	8	31	1.76
46838212--46838285	37	2.0	38	81	7	89	39	5	2	52	1.38
46839391--46839494	2	52.0	2	94	0	181	50	1	0	47	1.19
46839999--46840074	2	38.0	2	97	0	143	51	0	0	48	1.00
46840280--46840418	41	3.4	41	85	5	147	34	29	12	23	1.91
46840301--46840436	41	3.3	40	83	7	161	35	26	13	25	1.92
46844838--46845080	43	5.7	43	80	5	244	28	29	18	23	1.98
46844838--46845080	86	2.8	86	80	6	278	28	29	18	23	1.98
46844838--46845080	129	1.9	129	80	6	287	28	29	18	23	1.98
46845430--46845500	21	3.4	21	86	0	97	5	42	16	35	1.72
46845471--46845622	64	2.3	66	84	6	202	14	28	15	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46856463--46856509	19	2.5	19	86	6	60	25	19	10	44	1.82
46859410--46859486	7	10.6	7	80	14	77	83	0	16	0	0.66
46859397--46859486	15	6.0	15	74	20	82	82	0	15	2	0.77
46859405--46859483	31	2.5	30	84	8	104	82	0	16	1	0.74
46859411--46859486	8	9.6	8	78	18	72	82	0	17	0	0.66
46860301--46860344	21	2.0	21	86	8	61	70	0	15	13	1.17
46861659--46862584	46	20.2	46	91	0	1433	24	16	30	29	1.96
46862637--46862973	44	7.7	44	66	12	181	30	18	24	25	1.98
46862569--46862974	132	3.1	132	94	0	704	31	18	24	25	1.98
46865204--46865310	46	2.4	45	90	4	164	33	14	25	27	1.94
46867148--46867241	3	30.7	3	80	10	102	29	3	2	64	1.20
46868756--46868813	21	2.8	21	79	7	73	37	3	15	43	1.64
46869060--46869100	16	2.7	15	81	7	55	46	4	4	43	1.46
46868982--46869129	61	2.4	61	86	2	208	48	4	4	41	1.45
46869030--46869134	30	3.5	30	71	17	90	49	5	5	39	1.50
46869091--46869147	30	1.9	30	88	0	87	56	3	8	31	1.47
46871824--46871858	15	2.2	16	95	5	63	51	11	0	37	1.38
46872655--46873103	225	2.0	224	84	3	580	42	26	6	23	1.79
46873694--46873776	40	2.1	40	84	4	105	15	18	26	39	1.90
46876797--46876912	41	2.8	41	93	0	196	33	23	14	28	1.94
46878719--46878751	11	3.0	11	100	0	66	27	0	9	63	1.24
46879116--46879215	27	3.7	27	86	4	139	22	34	22	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46879588--46879612	3	8.3	3	100	0	50	32	0	0	68	0.90
46884735--46885485	158	4.8	155	73	17	626	30	11	7	50	1.65
46886267--46886727	148	3.0	146	65	24	329	51	7	11	30	1.64
46886135--46886894	307	2.4	310	88	5	1136	51	7	10	30	1.64
46887707--46887733	14	1.9	14	100	0	54	25	29	14	29	1.95
46888129--46888180	25	2.0	28	88	11	83	51	3	11	32	1.56
46895301--46895370	36	2.0	36	86	8	99	51	7	5	35	1.53
46895575--46895611	10	3.6	10	89	7	56	0	27	0	72	0.84
46895694--46895790	27	3.6	27	83	8	99	22	25	31	19	1.98
46896362--46896420	29	2.0	30	86	3	84	50	15	6	27	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204