genome.fa.s7.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 ID=Chr07-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  60982465

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  148  of  204  ( 24458 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44593821--44594085	116	2.3	116	84	5	347	37	18	14	28	1.91
44594223--44594307	19	4.5	19	86	0	116	42	7	11	38	1.69
44594216--44594307	38	2.4	38	96	0	166	41	7	13	38	1.72
44594216--44594333	19	5.9	21	81	5	90	39	6	14	38	1.72
44601074--44601218	45	3.3	45	69	13	138	28	20	26	24	1.99
44601193--44601828	132	4.8	132	92	0	1042	28	18	24	28	1.98
44602154--44602264	19	5.8	19	89	0	177	39	9	13	37	1.76
44602161--44602264	38	2.7	38	98	0	199	40	8	12	38	1.74
44602154--44602290	19	6.9	21	85	4	114	38	8	14	38	1.76
44612044--44612434	133	2.9	136	84	5	504	28	18	14	38	1.90
44612175--44612433	143	1.8	143	87	0	392	27	18	14	39	1.90
44612340--44612546	98	2.1	99	82	0	245	32	15	13	37	1.87
44612439--44612853	133	3.1	132	82	3	476	30	18	14	36	1.91
44612197--44612675	231	2.0	236	82	6	576	30	18	13	37	1.90
44616168--44616238	35	2.0	35	91	0	115	35	9	23	30	1.88
44620738--44620778	21	2.0	21	90	9	66	46	0	24	29	1.53
44630933--44631008	23	3.3	22	89	7	116	22	22	26	28	1.99
44633266--44633307	19	2.2	20	86	4	59	66	4	0	28	1.12
44635791--44635833	21	2.1	20	87	12	61	60	2	0	37	1.10
44640128--44640185	7	8.3	7	84	0	80	17	12	10	60	1.58
44640131--44640203	14	5.2	14	88	0	92	21	13	6	57	1.60
44640123--44640188	21	3.1	21	84	0	87	21	12	9	57	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44640138--44640210	7	10.4	7	86	0	74	23	16	5	54	1.62
44640131--44640210	21	3.8	21	83	0	88	22	15	6	56	1.61
44644962--44645006	22	2.0	24	86	8	67	33	0	11	55	1.35
44645012--44645059	20	2.5	19	80	9	53	29	2	12	56	1.48
44646366--44646592	67	3.4	68	78	1	251	32	17	24	25	1.97
44646422--44646605	68	2.7	67	80	1	233	33	19	22	24	1.97
44649584--44649669	42	2.0	42	84	4	111	15	32	26	25	1.95
44676852--44676920	25	2.8	25	88	2	95	30	18	24	26	1.98
44676880--44676933	25	2.2	25	82	0	63	38	11	24	25	1.88
44677169--44677198	15	1.9	16	93	6	53	43	20	0	36	1.52
44685359--44685523	43	3.9	42	76	8	136	32	26	16	25	1.96
44688594--44688662	22	3.1	22	97	0	129	26	24	14	34	1.94
44691556--44691881	43	7.7	43	87	2	399	33	24	15	26	1.95
44691556--44691881	85	3.8	85	84	2	395	33	24	15	26	1.95
44691556--44691862	127	2.4	128	88	2	429	33	25	14	26	1.94
44702495--44703256	44	17.7	44	70	11	323	27	26	18	27	1.98
44702531--44703473	129	7.3	129	76	9	543	27	25	18	27	1.98
44702407--44703123	173	4.2	173	90	2	1099	28	25	18	27	1.98
44702407--44703208	173	4.7	175	88	4	972	28	25	18	27	1.98
44702757--44703469	302	2.4	301	94	0	1232	28	25	18	27	1.98
44703056--44703425	173	2.2	170	90	1	587	28	25	18	27	1.98
44708264--44708288	8	3.1	8	100	0	50	76	0	12	12	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44711878--44711922	22	2.0	22	100	0	90	26	8	17	46	1.78
44711883--44711931	22	2.2	22	88	0	71	32	6	18	42	1.75
44715461--44715507	23	2.0	23	87	0	67	19	17	23	40	1.91
44715511--44715573	21	3.0	20	76	15	65	11	20	25	42	1.85
44724485--44724801	165	2.0	162	86	4	451	36	12	8	43	1.72
44725031--44725088	29	2.0	30	89	3	91	53	8	3	34	1.49
44725415--44725473	30	1.9	31	89	3	93	55	6	3	33	1.43
44726887--44727002	34	3.4	33	85	4	151	40	1	15	42	1.57
44727102--44727746	126	5.1	124	87	2	826	38	17	16	27	1.91
44731262--44731303	18	2.3	18	91	0	66	42	7	28	21	1.79
44735533--44735567	15	2.3	15	85	0	52	20	11	14	54	1.70
44739196--44739225	15	2.0	15	93	0	51	16	13	13	56	1.67
44743550--44743608	24	2.5	24	72	10	66	42	1	1	54	1.20
44750265--44750319	20	2.5	23	77	11	62	34	0	3	61	1.13
44750260--44750319	21	2.7	23	75	15	63	36	0	3	60	1.14
44750256--44750305	20	2.6	19	78	9	57	34	0	2	64	1.05
44751130--44751179	22	2.3	22	100	0	100	14	32	38	16	1.88
44751837--44751878	22	1.9	22	90	9	68	28	9	2	59	1.41
44763857--44763974	44	2.6	45	82	4	132	28	17	26	27	1.98
44763901--44764151	91	2.7	91	85	3	304	32	17	17	31	1.94
44763942--44764158	91	2.4	91	87	0	317	32	17	17	33	1.93
44764134--44764250	44	2.7	44	82	4	128	29	15	27	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44767049--44767101	19	2.7	19	82	11	63	41	1	9	47	1.47
44767278--44767307	14	2.1	15	93	6	53	26	6	3	63	1.35
44768240--44768299	29	2.0	30	84	9	79	21	15	18	45	1.86
44768678--44768707	14	2.1	14	93	0	51	50	0	0	50	1.00
44769017--44769129	23	5.1	22	72	19	92	27	0	3	68	1.12
44769051--44769083	10	3.4	10	83	8	50	33	0	3	63	1.10
44769065--44769138	25	3.0	26	72	18	70	28	2	4	64	1.25
44769021--44769136	22	5.2	21	70	20	76	26	0	4	68	1.14
44769006--44769147	47	3.1	47	75	11	143	25	2	4	67	1.22
44774210--44774242	2	16.5	2	100	0	66	48	0	0	51	1.00
44775050--44775087	20	1.9	20	88	0	58	57	2	7	31	1.41
44776284--44776326	22	2.0	22	90	0	68	55	4	9	30	1.52
44777020--44777050	13	2.3	14	94	5	55	51	12	0	35	1.40
44783104--44783149	23	2.0	24	82	4	58	32	26	2	39	1.68
44783295--44783356	3	20.7	3	100	0	124	66	0	0	33	0.92
44783963--44783996	17	2.1	17	88	5	52	2	11	5	79	1.02
44784022--44784071	24	2.0	24	84	3	64	54	4	0	42	1.19
44787889--44787924	6	6.0	6	86	0	54	77	2	0	19	0.88
44798644--44798811	72	2.3	72	86	4	223	15	23	19	41	1.89
44798669--44798786	24	4.9	24	73	1	101	17	21	19	41	1.90
44798679--44798835	72	2.2	72	86	2	226	17	22	19	40	1.92
44801279--44801303	13	1.9	13	100	0	50	8	0	24	68	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44802993--44803096	41	2.5	41	90	0	163	26	18	29	25	1.98
44804958--44804990	16	2.1	16	88	5	50	63	12	0	24	1.28
44806204--44806273	35	2.0	36	86	8	101	34	2	2	60	1.26
44823294--44823335	22	2.0	22	90	4	68	42	14	4	38	1.66
44828740--44828824	37	2.3	37	83	0	98	21	23	17	37	1.94
44829052--44829158	26	4.1	26	81	1	142	34	17	19	28	1.95
44840570--44840938	182	2.0	182	90	1	578	35	11	13	39	1.81
44843333--44843497	26	6.6	26	70	12	112	20	20	20	39	1.93
44844415--44844556	73	2.0	72	88	2	214	32	16	21	29	1.95
44846751--44847918	88	13.3	88	89	0	1653	27	23	19	30	1.98
44852155--44852181	2	13.5	2	100	0	54	48	0	0	51	1.00
44853321--44853404	41	2.0	41	88	0	123	26	23	8	41	1.82
44857461--44857603	73	2.0	72	90	1	223	32	17	20	29	1.95
44858257--44858368	3	36.7	3	74	19	72	62	1	6	29	1.30
44873937--44874109	90	2.0	87	90	8	275	41	8	8	41	1.67
44879622--44879658	15	2.5	15	100	0	74	56	5	24	13	1.58
44880909--44881007	48	2.1	48	94	0	171	52	3	15	29	1.57
44880919--44880995	25	3.2	25	68	20	72	51	1	15	31	1.51
44880933--44881006	25	3.0	24	69	21	64	51	2	16	29	1.58
44887337--44887398	29	2.1	31	84	6	83	37	19	14	29	1.91
44895482--44895519	16	2.4	16	91	8	60	42	0	36	21	1.53
44895874--44895910	9	4.1	9	89	0	56	29	8	13	48	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44897446--44897507	30	2.2	29	85	8	83	61	4	6	27	1.41
44898502--44898550	22	2.3	21	86	10	64	18	32	0	48	1.48
44904899--44904958	24	2.5	24	80	2	75	40	10	3	46	1.54
44907757--44907811	21	2.7	21	88	5	78	36	16	10	36	1.84
44908185--44908482	44	6.8	44	86	2	375	30	23	14	30	1.94
44908442--44909031	88	6.7	88	88	2	792	25	26	23	24	2.00
44908229--44908553	132	2.5	132	81	4	318	29	24	16	29	1.97
44908516--44908746	45	5.2	44	66	9	132	25	28	21	24	1.99
44915888--44915962	19	3.8	19	82	6	87	36	18	9	36	1.83
44915899--44915961	21	3.1	21	81	9	76	38	15	7	38	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204