Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 ID=Chr07-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  60982465

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  149  of  204  ( 24458 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44916972--44917096
59
2.1
58
88
5
180
44
18
21
15
1.86
44917025--44917425
105
3.8
106
90
2
621
37
16
18
27
1.92
44917025--44917425
209
1.9
211
91
1
662
37
16
18
27
1.92
44917475--44917592
62
2.0
56
88
9
173
23
23
17
34
1.96
44921243--44921284
3
14.3
3
90
5
68
69
2
0
28
1.01
44932424--44932453
15
1.9
16
93
6
53
66
10
23
0
1.21
44933992--44934094
51
2.0
52
88
1
154
64
10
7
17
1.48
44934321--44934353
17
1.9
18
88
11
52
45
0
12
42
1.41
44935569--44935619
9
5.4
9
86
9
75
39
27
9
23
1.86
44935569--44935617
20
2.5
20
90
6
75
40
28
10
20
1.85
44935785--44935819
2
18.0
2
94
5
63
48
0
0
51
1.00
44937174--44937221
24
2.0
24
84
8
62
35
12
29
22
1.91
44939783--44939834
25
2.1
25
92
7
88
25
26
9
38
1.86
44942310--44942337
14
2.0
14
100
0
56
57
0
0
42
0.99
44942296--44942328
10
3.3
10
95
0
57
51
0
0
48
1.00
44942359--44942443
32
2.6
33
77
5
93
44
18
10
25
1.82
44942424--44942490
34
1.9
35
84
3
91
47
11
8
31
1.71
44945601--44945759
39
4.1
39
83
0
192
35
30
16
16
1.92
44957036--44957064
14
2.0
15
93
6
51
34
0
13
51
1.42
44961311--44961390
29
2.8
29
80
0
106
42
6
18
32
1.75
44961302--44961389
29
3.0
28
78
8
95
38
6
20
34
1.79
44963829--44963865
16
2.3
16
95
0
65
24
13
18
43
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44964522--44964601
38
2.1
38
97
0
151
23
18
20
37
1.94
44964871--44965109
59
4.1
59
92
3
392
51
8
4
35
1.53
44965486--44965529
18
2.4
18
92
0
70
43
11
22
22
1.85
44969785--44969886
3
34.0
3
86
0
114
32
6
1
58
1.35
44972241--44972265
6
4.2
6
100
0
50
20
0
0
80
0.72
44972371--44972408
19
2.1
18
95
5
67
42
0
0
57
0.98
44974031--44974057
6
4.5
6
100
0
54
48
0
0
51
1.00
44988136--44988162
14
1.9
14
100
0
54
88
0
0
11
0.50
44988282--44988325
14
3.1
14
86
3
61
70
0
29
0
0.88
44988282--44988350
20
3.5
19
74
16
61
71
0
28
0
0.87
44988757--44989422
284
2.3
285
94
0
1163
50
7
11
30
1.66
44994573--44994598
9
2.9
9
100
0
52
57
0
0
42
0.98
44994610--44994656
19
2.7
18
84
12
62
61
12
0
25
1.31
44994910--44994946
10
3.6
10
88
3
56
0
29
0
70
0.88
44995018--44995109
27
3.4
27
96
0
166
17
33
34
14
1.90
44995584--44995622
20
2.0
20
84
0
51
64
0
5
30
1.15
44995620--44995646
7
3.9
7
100
0
54
44
0
0
55
0.99
44996631--44996670
21
2.0
20
85
5
53
55
0
0
45
0.99
45000432--45000482
19
2.7
20
71
17
54
33
3
0
62
1.13
45000581--45000610
15
2.1
15
93
6
53
10
0
6
83
0.81
45000845--45000881
9
4.1
9
89
0
56
45
10
10
32
1.74
45001136--45001161
7
3.7
7
100
0
52
15
69
0
15
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45008107--45008306
102
2.0
102
90
0
319
32
27
19
21
1.97
45008211--45008347
42
3.5
40
72
17
126
32
27
18
21
1.97
45008253--45008380
33
3.6
33
73
17
121
34
25
21
18
1.96
45008209--45008381
75
2.3
75
90
0
274
33
26
19
20
1.96
45008075--45008412
177
1.9
177
91
1
552
32
26
19
21
1.97
45008964--45009012
23
2.1
23
100
0
98
57
16
4
22
1.56
45016706--45017062
127
2.8
127
84
5
395
38
16
9
36
1.80
45024532--45024680
63
2.4
63
82
4
169
24
28
22
24
1.99
45025225--45025275
23
2.3
23
83
6
70
70
3
21
3
1.20
45027014--45027039
11
2.4
11
100
0
52
23
0
0
76
0.78
45029169--45029252
28
3.0
28
92
0
132
58
8
14
19
1.61
45031618--45031745
63
2.0
63
100
0
256
32
18
12
36
1.88
45032852--45032891
16
2.4
16
91
8
62
47
20
0
32
1.50
45034842--45034911
3
23.3
3
91
0
95
58
0
7
34
1.25
45042012--45042040
2
15.0
2
92
7
51
51
0
0
48
1.00
45044207--45044401
98
2.0
98
95
0
354
36
25
10
27
1.89
45044680--45044712
15
2.2
15
94
0
57
63
12
0
24
1.28
45045243--45045306
3
21.3
3
90
0
101
68
0
1
29
0.99
45045908--45045936
13
2.3
13
94
5
51
86
0
0
13
0.58
45046970--45047020
19
2.7
19
81
6
59
56
1
0
41
1.10
45047007--45047083
30
2.5
30
85
6
93
46
3
3
45
1.39
45047027--45047093
29
2.3
30
81
2
82
47
4
2
44
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45047659--45047712
24
2.2
25
83
9
67
40
5
1
51
1.36
45050288--45050378
46
2.0
46
88
0
137
29
20
21
27
1.98
45055530--45055573
2
22.0
2
95
0
79
47
0
2
50
1.13
45055897--45055930
15
2.1
17
89
10
54
35
5
0
58
1.22
45063785--45063851
20
3.3
20
93
0
107
49
0
25
25
1.51
45067825--45067913
28
3.1
28
79
4
106
56
3
14
25
1.54
45068691--45068756
34
1.9
34
87
6
98
31
25
18
24
1.97
45071487--45071734
50
4.8
52
80
6
256
27
20
29
22
1.98
45071486--45071783
50
5.9
50
79
5
242
28
20
28
22
1.99
45075987--45076084
48
2.0
48
100
0
196
41
14
6
37
1.70
45077667--45077697
16
1.9
16
93
0
53
38
0
0
61
0.96
45077765--45077823
6
9.5
6
74
18
50
47
1
0
50
1.11
45077763--45077833
26
3.0
23
77
16
65
47
2
0
49
1.16
45077761--45077828
31
2.1
34
86
8
97
48
2
0
48
1.16
45098273--45098315
18
2.4
18
80
7
52
74
4
0
20
1.00
45117041--45117092
26
2.0
26
100
0
104
26
30
7
34
1.85
45117369--45117436
34
2.0
34
85
5
93
30
22
26
20
1.98
45127289--45127321
11
3.0
11
100
0
66
36
27
9
27
1.87
45138266--45138318
26
2.0
27
85
3
72
45
0
3
50
1.19
45138298--45138340
19
2.3
19
84
8
52
41
2
2
53
1.26
45140387--45140431
14
3.1
14
87
9
63
77
0
6
15
0.96
45140395--45140458
23
2.6
25
75
9
51
78
0
4
17
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45140393--45140463
13
5.3
13
73
17
56
78
0
4
16
0.90
45140393--45140461
35
2.0
35
88
5
104
78
0
4
17
0.91
45142288--45142312
8
3.1
8
100
0
50
12
12
28
48
1.76
45142337--45142385
25
2.0
25
83
0
62
38
0
16
44
1.48
45142779--45142863
43
2.0
43
92
0
143
50
1
25
22
1.56
45145116--45145194
39
2.0
39
97
0
149
25
15
18
40
1.90
45154643--45154671
9
3.3
9
95
4
51
44
0
0
55
0.99
45154644--45154672
13
2.1
14
93
6
51
41
0
0
58
0.98
45160761--45160806
17
2.8
16
86
6
56
19
21
30
28
1.98
45167182--45167237
23
2.4
23
80
14
69
7
1
7
83
0.86
45170235--45170281
19
2.5
20
86
6
62
42
10
21
25
1.85
45172272--45172347
3
24.3
3
75
10
55
63
1
6
28
1.28
45172288--45172347
18
3.3
18
88
0
75
65
1
3
30
1.19
45176582--45176646
32
2.1
32
97
2
123
47
12
9
30
1.72
45176658--45176683
4
6.5
4
100
0
52
76
0
0
23
0.78
45182179--45182220
12
3.4
12
96
3
75
2
7
21
69
1.25
45182216--45182249
12
2.6
14
86
13
54
0
17
5
76
0.98
45182786--45182850
32
2.1
32
94
2
114
49
10
9
30
1.69
45184048--45184101
3
17.7
3
96
3
99
31
0
1
66
1.02
45187197--45187253
25
2.2
25
84
9
71
36
14
5
43
1.67
45187537--45187561
13
1.9
13
100
0
50
8
0
32
60
1.26
45190117--45190179
18
3.4
17
83
14
63
30
4
1
63
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45190140--45190210
3
23.3
3
78
13
74
29
5
2
61
1.33
45190248--45190283
16
2.2
17
95
5
65
50
0
0
50
1.00
45191333--45191357
8
3.1
8
100
0
50
0
16
12
72
1.13
45192289--45192332
19
2.3
20
84
7
56
27
20
11
40
1.86
45194415--45194469
9
6.3
9
87
8
78
74
10
0
14
1.07
45194416--45194469
17
3.2
16
87
12
81
74
11
0
14
1.08
45194415--45194469
26
2.1
26
93
0
92
74
10
0
14
1.07
45195450--45195496
21
2.2
21
92
0
76
27
10
36
25
1.89
45196580--45197162
88
6.6
88
92
0
882
27
23
24
24
2.00
45197238--45198138
44
20.6
45
68
15
403
30
19
20
28
1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204