genome.fa.s7.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 ID=Chr07-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  60982465

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  173  of  204  ( 24458 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51588396--51588440	22	2.2	20	84	8	54	17	6	6	68	1.33
51588438--51588486	24	2.0	24	88	7	73	36	0	2	61	1.08
51598063--51598115	29	1.9	26	81	11	61	64	3	5	26	1.33
51598088--51598137	21	2.3	22	82	3	66	62	6	4	28	1.37
51598674--51598727	21	2.6	20	79	5	54	27	5	5	61	1.41
51601398--51601743	123	2.8	124	95	0	604	28	16	22	32	1.96
51604930--51605176	25	10.1	25	85	4	351	43	13	0	42	1.44
51605311--51605344	15	2.3	15	89	0	50	0	23	32	44	1.54
51605598--51605637	18	2.2	18	95	0	71	40	7	30	22	1.81
51607409--51607436	13	2.2	13	100	0	56	71	0	0	28	0.86
51607522--51607570	11	4.4	11	86	2	71	48	0	34	16	1.46
51608504--51608542	20	2.0	20	84	0	51	15	0	28	56	1.40
51609019--51609114	40	2.4	40	91	0	156	39	22	19	17	1.92
51609144--51609334	41	4.7	41	96	0	328	21	21	26	29	1.99
51609679--51609711	14	2.3	15	94	5	59	30	0	33	36	1.58
51609689--51609785	42	2.3	43	78	5	99	24	1	35	39	1.63
51612402--51612438	2	18.5	2	100	0	74	48	0	0	51	1.00
51612971--51613000	15	2.0	15	93	0	51	16	6	16	60	1.56
51613440--51613477	19	2.0	19	85	10	51	5	0	26	68	1.11
51615012--51615241	43	5.3	43	85	2	286	19	18	32	30	1.95
51615604--51615647	21	2.1	21	100	0	88	40	4	18	36	1.71
51619298--51619355	3	19.3	3	100	0	116	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51619458--51619502	18	2.5	18	100	0	90	42	42	6	8	1.62
51620600--51620655	28	2.0	27	82	3	67	26	1	3	67	1.16
51624608--51624645	12	3.2	12	85	7	51	81	5	13	0	0.85
51624623--51624660	12	3.2	12	85	3	51	78	2	18	0	0.86
51624606--51624663	24	2.4	24	80	8	64	79	5	15	0	0.90
51624605--51624661	17	3.3	17	83	14	64	78	5	15	0	0.91
51625639--51626298	87	7.6	87	94	0	1122	30	23	22	23	1.99
51626308--51626728	44	9.6	44	68	7	217	27	18	25	27	1.98
51626308--51626836	132	4.0	132	93	1	907	28	19	25	27	1.98
51629425--51629487	3	21.0	3	93	0	99	33	4	0	61	1.17
51656544--51656573	2	15.0	2	100	0	60	50	0	0	50	1.00
51656675--51656702	2	14.0	2	100	0	56	50	0	0	50	1.00
51657200--51657229	2	15.0	2	100	0	60	50	0	0	50	1.00
51657914--51657957	22	2.0	22	82	8	54	0	27	4	68	1.09
51657921--51657999	6	12.5	6	71	14	52	0	21	5	73	1.02
51662373--51662417	2	23.5	2	86	8	67	48	2	0	48	1.13
51662790--51662835	23	2.1	22	84	8	58	52	2	0	45	1.13
51664920--51664954	18	1.9	18	88	0	52	31	8	8	51	1.63
51670268--51670301	14	2.5	14	95	4	61	50	35	0	14	1.44
51672060--51672295	126	1.9	126	85	0	328	27	22	27	21	1.99
51677447--51677492	3	15.3	3	90	0	74	32	36	2	28	1.69
51690906--51690930	11	2.3	11	100	0	50	40	32	0	28	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51691165--51691233	24	2.8	24	78	6	84	42	2	0	55	1.15
51691239--51691268	16	1.9	15	93	6	51	0	20	60	20	1.37
51693025--51693076	25	2.1	25	88	0	77	19	28	21	30	1.97
51693033--51693082	25	2.0	25	92	0	82	20	32	16	32	1.94
51693033--51693097	25	2.6	25	82	4	69	20	29	16	33	1.95
51693099--51693189	25	3.6	25	77	11	114	27	28	13	30	1.94
51693078--51693208	50	2.6	50	82	9	160	24	29	15	31	1.95
51693099--51693208	25	4.4	25	76	11	109	26	29	15	29	1.96
51714625--51715091	156	3.0	156	97	0	859	31	20	16	31	1.95
51717567--51717625	20	2.8	20	75	14	57	13	5	3	77	1.05
51736489--51736534	24	1.9	24	86	0	65	45	0	41	13	1.43
51736486--51736549	33	1.9	33	83	0	83	42	1	40	15	1.57
51743572--51743630	27	2.1	28	81	3	66	66	3	3	27	1.24
51753765--51753823	17	3.3	18	74	9	59	62	5	0	32	1.17
51753765--51753802	19	2.1	19	90	5	60	63	7	0	28	1.23
51753937--51753966	3	10.0	3	100	0	60	33	0	0	66	0.92
51755170--51755218	16	3.1	16	93	0	89	34	6	36	22	1.79
51755435--51755671	120	2.0	120	94	0	420	51	6	1	41	1.35
51755572--51755606	18	2.0	17	88	5	52	54	0	0	45	0.99
51758750--51758796	23	2.0	23	95	0	85	46	17	31	4	1.67
51761485--51761510	13	2.0	13	100	0	52	23	23	23	30	1.99
51772767--51772810	23	1.9	23	86	9	63	36	13	9	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51777671--51777736	23	2.9	22	81	4	78	43	0	0	56	0.99
51777699--51777759	34	1.9	33	83	12	83	49	0	0	50	1.00
51777739--51777871	15	8.6	15	67	17	58	38	2	2	57	1.24
51777793--51777835	21	2.0	21	90	0	68	39	0	0	60	0.97
51777809--51778020	112	1.9	114	86	4	304	40	3	2	54	1.30
51778096--51778161	14	4.7	14	73	12	64	57	0	4	37	1.19
51778096--51778153	29	1.9	31	86	6	84	56	0	3	39	1.16
51778212--51778271	15	4.1	13	84	16	57	63	0	0	36	0.95
51778215--51778271	16	3.7	16	88	11	84	61	0	0	38	0.96
51778264--51778324	20	2.9	20	83	11	61	52	1	1	44	1.20
51778378--51778439	27	2.3	26	81	13	81	56	0	0	43	0.99
51778415--51778454	19	2.0	22	85	14	59	55	0	2	42	1.13
51778520--51778580	24	2.4	26	73	15	65	72	6	4	16	1.24
51782429--51782479	20	2.5	20	100	0	102	33	19	15	31	1.93
51793821--51793853	17	1.9	17	93	0	57	48	3	6	42	1.43
51794206--51794232	2	13.5	2	100	0	54	48	0	0	51	1.00
51799788--51799905	42	2.8	42	88	0	173	31	22	22	23	1.98
51800034--51800140	42	2.5	43	85	7	155	20	21	20	37	1.95
51800462--51800506	21	2.1	21	83	0	54	2	46	17	33	1.61
51803278--51803316	19	2.1	19	85	9	53	30	0	17	51	1.46
51803180--51803619	87	4.9	89	79	10	400	31	1	20	46	1.60
51803365--51803403	19	2.1	19	85	9	53	30	0	17	51	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51803178--51803744	43	13.7	43	72	16	355	32	1	19	46	1.60
51803630--51803728	38	2.6	37	87	7	128	39	2	14	44	1.56
51803751--51803800	21	2.5	20	81	18	61	36	0	16	48	1.46
51803173--51803777	9	67.8	9	70	17	374	32	1	19	45	1.60
51803993--51804051	13	4.5	13	91	0	82	45	1	10	42	1.48
51804513--51804548	16	2.2	16	100	0	72	58	5	11	25	1.54
51805953--51806059	53	2.0	53	90	0	169	37	22	16	23	1.94
51806760--51806784	7	3.6	7	100	0	50	48	52	0	0	1.00
51807737--51807772	18	2.0	18	89	10	56	69	5	0	25	1.10
51807741--51807780	18	2.2	19	86	4	55	70	5	0	25	1.08
51807965--51808456	114	4.3	113	82	4	542	27	24	17	30	1.97
51808044--51808488	229	1.9	227	84	4	590	26	23	18	31	1.97
51819219--51819246	2	14.0	2	100	0	56	50	0	0	50	1.00
51825314--51825356	16	2.5	18	88	7	63	37	0	0	62	0.95
51827645--51827691	22	2.1	22	84	0	58	68	14	10	6	1.38
51832048--51832121	37	2.0	37	100	0	148	32	16	13	37	1.87
51837220--51837272	27	2.0	27	100	0	106	33	13	22	30	1.92
51850831--51850910	25	3.2	25	77	5	74	20	26	18	35	1.95
51854178--51854233	22	2.5	22	85	0	76	41	17	26	14	1.88
51854172--51854302	25	5.5	25	80	7	123	37	17	24	20	1.94
51855168--51855207	13	3.2	13	85	7	55	0	30	0	70	0.88
51855318--51855364	23	2.0	23	91	0	76	42	10	4	42	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51858448--51858518	31	2.3	31	78	9	74	26	7	19	46	1.75
51859085--51859170	38	2.3	38	82	8	104	48	2	4	44	1.36
51859197--51859272	25	3.1	23	76	12	71	68	1	25	5	1.18
51859217--51859270	21	2.5	22	85	8	76	66	1	25	5	1.23
51860447--51860489	22	2.0	22	90	4	70	44	4	25	25	1.73
51868530--51868562	7	4.7	7	100	0	66	27	15	45	12	1.81
51881647--51881671	5	5.0	5	100	0	50	40	0	40	20	1.52
51893803--51893840	19	2.0	19	100	0	76	36	15	10	36	1.82
51897148--51897204	27	2.1	27	96	0	105	33	19	17	29	1.95
51905630--51905664	18	1.9	18	88	0	52	40	2	2	54	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204