genome.fa.s7.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 ID=Chr07-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  60982465

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  151  of  204  ( 24458 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45461600--45461640	18	2.3	18	79	4	57	41	9	12	36	1.76
45466275--45466317	20	2.1	20	86	4	59	48	2	2	46	1.27
45470654--45470706	28	1.9	28	84	3	72	26	16	7	49	1.73
45471341--45471417	22	3.4	22	67	19	68	36	25	2	35	1.70
45471328--45471422	46	2.1	46	100	0	190	41	23	2	33	1.66
45475960--45476036	22	3.4	22	67	19	68	36	25	2	35	1.70
45475947--45476041	46	2.1	46	100	0	190	41	23	2	33	1.66
45478205--45478315	43	2.6	42	80	9	129	31	25	18	24	1.98
45478318--45478505	41	4.6	41	88	1	243	26	22	17	34	1.96
45480283--45480308	6	4.3	6	100	0	52	50	15	15	19	1.79
45480667--45480702	18	2.0	18	94	0	63	25	11	22	41	1.86
45484236--45484288	23	2.2	24	81	18	67	18	5	45	30	1.73
45486483--45486511	14	2.0	15	93	6	51	17	0	0	82	0.66
45501392--45501439	18	2.7	17	84	9	60	29	0	2	68	1.01
45503056--45503236	66	2.7	66	77	7	188	34	25	10	29	1.89
45504048--45504138	25	3.6	25	98	0	173	40	8	14	36	1.77
45508133--45508174	21	2.0	22	85	4	59	21	40	14	23	1.90
45512424--45512480	16	3.6	16	95	0	87	29	0	36	33	1.58
45512715--45512849	15	8.9	15	65	24	61	50	3	2	43	1.32
45512775--45512865	44	2.1	43	81	6	103	53	3	2	40	1.29
45512934--45512969	17	2.2	16	86	13	56	47	0	5	47	1.25
45512938--45512983	17	2.5	20	86	13	71	45	2	6	45	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45512990--45513184	93	2.1	92	88	4	286	47	4	4	44	1.41
45514584--45514610	11	2.5	11	100	0	54	51	18	7	22	1.70
45516857--45516887	15	2.1	15	100	0	62	45	0	19	35	1.51
45523429--45523550	58	2.1	58	92	0	199	40	21	9	28	1.85
45526088--45526123	6	6.3	6	87	12	58	13	36	30	19	1.91
45526093--45526123	16	1.9	16	100	0	62	12	35	32	19	1.90
45526753--45526777	8	3.1	8	100	0	50	24	0	0	76	0.80
45535879--45535915	5	7.4	5	100	0	74	18	0	0	81	0.70
45547129--45547190	25	2.3	26	83	8	72	59	1	4	33	1.28
45556765--45556826	25	2.3	26	83	8	72	59	1	4	33	1.28
45559629--45559673	18	2.5	18	79	13	56	20	28	2	48	1.61
45560160--45560184	6	4.2	6	100	0	50	48	52	0	0	1.00
45560337--45560388	3	17.3	3	100	0	104	32	0	0	67	0.91
45560426--45560473	18	2.7	17	83	6	60	43	6	4	45	1.48
45565377--45565493	48	2.3	50	76	19	118	70	6	14	8	1.33
45565853--45565880	6	4.7	6	100	0	56	71	0	14	14	1.15
45567128--45567845	86	8.3	87	89	2	1027	28	24	23	23	1.99
45567128--45567845	173	4.1	173	89	3	1025	28	24	23	23	1.99
45567129--45567845	259	2.8	259	90	2	1071	28	24	23	23	1.99
45567705--45567843	44	3.2	44	63	15	106	27	26	21	24	1.99
45569776--45569835	3	19.3	3	91	3	93	31	1	1	65	1.13
45571905--45572014	44	2.5	44	94	2	186	31	20	15	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45573220--45573254	12	2.9	12	82	0	52	40	28	11	20	1.87
45573220--45573266	24	2.0	24	86	0	67	38	27	12	21	1.90
45576932--45576997	32	2.1	32	97	0	123	19	27	24	28	1.99
45580866--45581135	42	6.4	42	80	7	264	31	19	24	24	1.98
45580866--45581135	85	3.2	85	85	5	325	31	19	24	24	1.98
45580885--45581134	127	2.0	127	86	5	355	32	19	24	24	1.98
45581566--45581637	21	3.4	21	82	0	81	2	43	18	36	1.64
45587111--45587355	9	27.7	9	80	7	272	33	0	16	49	1.51
45591336--45591370	14	2.4	15	90	4	54	42	37	0	20	1.52
45592177--45592261	21	4.0	20	72	11	53	45	32	1	20	1.58
45592185--45592264	14	5.6	14	73	14	65	47	32	0	20	1.50
45592186--45592214	15	1.9	15	100	0	58	51	34	0	13	1.42
45592928--45593213	112	2.5	112	80	5	335	25	24	19	30	1.98
45595511--45595615	40	2.6	41	77	5	117	31	20	27	20	1.97
45595673--45595869	41	4.8	41	78	5	209	16	22	26	34	1.95
45596418--45596485	14	4.9	14	71	16	52	25	0	33	41	1.56
45597415--45597516	7	13.9	7	79	10	96	18	0	48	33	1.49
45597397--45597516	29	4.1	29	81	6	125	19	0	47	33	1.50
45597414--45597516	22	4.6	22	82	7	136	18	0	47	33	1.49
45597422--45597516	15	6.4	15	82	11	108	18	0	47	33	1.49
45597394--45597517	7	17.0	7	76	14	90	19	0	45	34	1.50
45603939--45604088	66	2.3	66	89	2	221	41	19	24	14	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45604104--45604191	21	4.2	21	82	2	106	34	14	44	6	1.72
45604100--45604191	42	2.2	42	92	0	148	34	15	43	6	1.72
45604305--45604428	43	2.9	42	81	4	151	24	16	29	29	1.97
45604305--45604507	86	2.3	87	80	2	221	24	22	27	26	2.00
45604308--45604449	43	3.3	41	78	7	133	22	19	30	27	1.98
45604352--45604621	129	2.1	128	80	7	296	24	25	24	25	2.00
45607227--45607601	123	3.0	123	91	1	597	29	16	22	32	1.95
45610725--45610792	17	3.8	17	71	16	57	48	1	5	44	1.36
45610610--45610854	115	2.1	115	92	3	402	45	6	8	39	1.62
45610857--45611585	45	16.0	45	77	13	594	27	0	24	47	1.57
45610848--45611576	68	10.7	67	77	12	509	27	0	23	47	1.56
45610848--45611578	23	32.1	23	75	14	569	27	0	23	47	1.56
45611523--45611595	23	3.2	23	71	21	64	27	0	23	49	1.50
45611624--45611671	25	1.9	25	100	0	96	39	14	0	45	1.45
45612102--45612139	18	2.1	18	95	0	67	39	7	28	23	1.83
45612789--45612813	7	3.6	7	100	0	50	60	12	0	28	1.32
45612984--45613021	20	1.9	20	84	10	51	55	7	2	34	1.43
45616929--45616970	19	2.2	20	86	4	59	28	0	4	66	1.12
45619079--45619200	23	5.3	23	80	0	154	30	24	20	24	1.99
45619086--45619200	46	2.5	46	88	0	176	30	24	20	24	1.99
45621072--45621109	11	3.5	11	92	0	67	42	2	7	47	1.46
45624548--45624595	18	2.7	18	93	0	78	35	10	12	41	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45625020--45625191	72	2.4	72	87	4	260	27	5	13	53	1.61
45639012--45639063	24	2.2	23	83	10	61	23	5	3	67	1.29
45639991--45640050	30	2.0	31	86	3	86	40	0	40	20	1.52
45640344--45640374	9	3.4	9	90	0	53	38	22	12	25	1.90
45643755--45643804	15	3.5	15	75	25	54	66	0	14	20	1.26
45645389--45645430	23	1.9	22	85	9	59	54	4	9	30	1.53
45646142--45646206	24	2.7	24	80	4	69	67	9	20	3	1.32
45646160--45646205	24	1.9	24	90	0	74	65	13	17	4	1.42
45646909--45647413	128	3.9	128	92	0	839	25	24	19	30	1.98
45649725--45649793	26	2.7	26	76	13	70	10	10	10	69	1.37
45654350--45654391	23	1.9	22	85	9	59	54	4	9	30	1.53
45654387--45654442	22	2.7	21	81	8	62	67	7	3	21	1.30
45655101--45655165	24	2.7	24	80	4	69	67	9	20	3	1.32
45655119--45655164	24	1.9	24	90	0	74	65	13	17	4	1.42
45659247--45659276	13	2.3	13	100	0	60	33	6	0	60	1.23
45668015--45668092	21	3.8	21	83	3	88	42	12	24	20	1.87
45676340--45676429	36	2.4	38	83	3	121	15	14	40	30	1.87
45678916--45678951	16	2.2	17	90	5	56	8	16	0	75	1.04
45679306--45679360	16	3.4	16	75	12	58	16	23	1	58	1.48
45679420--45679450	13	2.4	13	94	0	53	38	3	0	58	1.15
45680849--45680944	48	2.0	48	91	0	156	40	21	17	19	1.91
45688182--45688212	2	15.5	2	93	0	53	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45688221--45688301	42	2.0	40	83	9	101	39	12	3	44	1.60
45688481--45688549	3	22.7	3	91	2	111	30	1	2	65	1.16
45691809--45691849	13	3.2	12	83	10	55	82	9	0	7	0.83
45694008--45694184	95	1.9	95	84	2	239	35	20	17	26	1.95
45694153--45695359	95	12.7	95	91	0	1898	29	20	22	26	1.99
45695346--45695625	50	5.6	50	70	17	172	34	22	18	24	1.96
45695341--45695621	99	2.8	99	90	2	422	35	21	19	23	1.96
45695341--45695702	99	3.6	99	86	3	327	35	20	19	24	1.96
45695694--45696000	44	7.1	43	72	12	220	30	19	21	28	1.98
45695696--45696006	129	2.4	129	87	1	444	29	19	21	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204