Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 ID=Chr07-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  60982465

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  41  of  204  ( 24458 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14007965--14008404
9
51.2
9
69
19
162
39
0
14
45
1.51
14007970--14008089
16
7.9
16
67
19
87
35
1
18
45
1.60
14007984--14008138
25
6.2
25
77
8
136
38
1
16
44
1.56
14008010--14008201
34
5.5
34
75
11
140
39
1
15
44
1.56
14008073--14008284
34
6.5
34
78
11
162
42
0
13
43
1.47
14008272--14008303
16
2.0
16
100
0
64
31
0
25
43
1.55
14008145--14008408
142
1.8
145
91
4
446
39
0
13
46
1.46
14008329--14008436
22
5.1
22
74
22
97
39
0
11
49
1.39
14008094--14008470
62
6.3
61
78
16
357
41
0
12
45
1.44
14008413--14008477
34
1.9
34
96
0
121
43
0
10
46
1.38
14009057--14009177
38
3.0
39
84
8
127
42
0
10
45
1.44
14009094--14009181
22
4.3
21
71
19
69
42
1
12
44
1.49
14011832--14011891
16
3.9
16
70
14
54
33
46
0
20
1.51
14012507--14012545
2
19.5
2
100
0
78
48
0
0
51
1.00
14013205--14013243
15
2.5
16
83
4
53
35
43
0
20
1.52
14013743--14013989
82
3.0
82
81
4
293
35
23
25
16
1.95
14013743--14013989
41
6.0
41
81
2
264
35
23
25
16
1.95
14014043--14014135
40
2.3
40
81
5
109
16
30
22
31
1.95
14016414--14016449
16
2.2
16
100
0
72
41
11
13
33
1.80
14016970--14017037
26
2.7
25
84
4
84
33
1
1
63
1.13
14016979--14017037
25
2.4
25
83
8
75
35
1
1
61
1.16
14018145--14018206
31
2.0
32
84
9
83
38
6
9
45
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14021626--14021694
23
3.0
23
79
12
88
18
24
21
34
1.96
14028420--14028488
23
3.0
23
79
12
88
18
24
21
34
1.96
14033614--14033680
22
3.1
22
75
8
59
56
2
1
38
1.24
14035503--14035535
15
2.1
17
88
11
52
57
3
0
39
1.14
14041110--14041150
16
2.5
16
88
4
55
58
0
2
39
1.11
14051520--14051561
21
2.0
20
86
13
59
40
9
0
50
1.35
14051525--14051566
19
2.2
18
84
16
50
35
7
0
57
1.26
14060559--14060601
17
2.5
17
81
7
52
53
2
2
41
1.26
14071738--14071851
59
1.9
59
90
0
183
28
11
8
51
1.67
14072792--14072835
18
2.3
20
88
7
65
34
0
2
63
1.07
14084948--14085069
55
2.2
58
82
7
144
31
11
17
40
1.85
14088442--14088504
29
2.2
29
80
5
74
44
23
12
19
1.85
14089260--14089294
15
2.5
14
86
13
54
45
0
0
54
0.99
14089313--14089346
10
3.4
10
100
0
68
44
0
0
55
0.99
14089303--14089356
20
2.7
20
72
16
58
48
0
0
51
1.00
14091054--14091188
49
2.8
49
81
2
146
27
26
22
23
1.99
14104409--14104438
11
2.7
11
89
0
51
46
3
0
50
1.18
14116099--14116140
19
2.3
19
87
4
59
66
0
0
33
0.92
14121205--14121253
2
24.5
2
100
0
98
48
0
0
51
1.00
14131112--14131161
25
2.0
26
84
11
68
50
8
12
30
1.68
14132290--14132401
34
3.4
32
69
18
102
32
3
8
55
1.48
14132276--14132416
68
2.1
68
100
0
282
31
2
8
56
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14132388--14132455
29
2.3
31
82
12
81
26
2
11
58
1.47
14134545--14134585
3
13.7
3
100
0
82
0
31
0
68
0.90
14139046--14139088
22
2.0
22
86
9
61
30
0
2
67
1.03
14144678--14144722
2
22.5
2
100
0
90
48
0
0
51
1.00
14145633--14145689
11
5.3
11
74
2
53
64
8
7
19
1.44
14153840--14154361
198
2.7
187
85
5
659
39
16
16
27
1.90
14163694--14163726
15
2.2
15
94
0
57
30
48
3
18
1.63
14167055--14167143
22
3.9
23
82
8
110
39
20
24
15
1.91
14167051--14167154
22
4.4
24
79
8
90
42
19
22
16
1.89
14169441--14169499
31
1.9
31
86
6
84
50
3
8
37
1.49
14170128--14170214
31
2.8
29
78
14
86
47
12
3
36
1.59
14170494--14170551
26
2.2
26
84
0
71
65
3
0
31
1.09
14170534--14170559
11
2.4
11
100
0
52
61
0
0
38
0.96
14170504--14170583
37
2.1
40
84
11
105
60
1
0
38
1.05
14170666--14170690
13
1.9
13
100
0
50
16
16
20
48
1.82
14172761--14172820
24
2.3
27
76
23
67
45
0
8
46
1.33
14172769--14172833
20
3.0
22
74
19
64
46
0
9
44
1.35
14195447--14195488
22
1.9
22
85
0
57
26
7
19
47
1.74
14195929--14195979
24
2.1
25
82
10
61
54
3
3
37
1.37
14198237--14198479
133
1.8
133
90
1
389
30
19
19
30
1.97
14200570--14200670
48
2.1
48
81
7
116
46
3
45
3
1.40
14201872--14201933
31
2.0
31
100
0
124
32
12
16
38
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14209099--14209169
35
2.0
35
100
0
142
33
16
14
35
1.89
14226194--14226261
30
2.3
31
80
16
83
52
1
1
44
1.19
14230421--14230479
28
2.1
29
84
9
77
40
1
1
55
1.20
14236663--14236710
10
4.9
10
80
12
55
39
0
12
47
1.41
14236667--14236712
20
2.2
21
92
7
85
36
0
15
47
1.45
14238893--14239122
37
6.0
37
87
9
320
25
21
15
36
1.93
14239039--14239261
52
4.6
46
88
7
266
27
22
14
34
1.93
14239082--14239255
52
3.3
52
91
1
267
27
23
13
35
1.93
14239038--14239261
98
2.3
98
80
9
253
27
23
14
34
1.93
14242728--14242767
4
10.0
4
89
10
64
75
0
22
2
0.93
14248105--14248177
18
3.9
18
81
12
76
61
0
1
36
1.05
14248110--14248146
10
3.8
10
82
17
51
54
0
0
45
1.00
14248142--14248195
18
3.1
18
78
7
58
66
0
5
27
1.13
14248124--14248195
34
2.0
37
86
7
105
63
0
4
31
1.13
14248195--14248251
2
27.5
2
92
7
96
49
0
3
47
1.18
14248147--14248201
16
3.4
15
76
16
56
63
0
5
30
1.17
14248698--14248733
15
2.3
17
86
13
51
30
5
2
61
1.33
14249293--14249327
18
1.9
18
94
0
61
25
20
0
54
1.45
14256634--14256745
57
1.9
58
85
1
154
27
19
8
43
1.81
14258277--14258333
2
28.5
2
100
0
114
49
0
0
50
1.00
14259198--14259347
41
3.6
41
88
2
203
23
28
20
28
1.99
14259988--14260067
2
41.5
2
72
12
51
45
7
2
45
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14261798--14261870
26
2.8
26
81
2
94
15
26
24
34
1.94
14261885--14261952
25
2.7
26
84
4
86
20
27
17
33
1.95
14271351--14271426
23
3.4
23
83
5
86
38
23
21
17
1.93
14279530--14279558
6
5.0
6
91
8
51
17
0
0
82
0.66
14282476--14282769
148
2.0
149
92
2
493
39
11
7
41
1.70
14285769--14285843
32
2.4
30
80
10
78
37
4
6
52
1.47
14290294--14290351
22
2.5
24
80
5
57
70
8
6
13
1.32
14295248--14295289
22
1.9
22
85
0
57
40
16
4
38
1.70
14299305--14299349
16
2.8
16
90
6
65
66
0
6
26
1.16
14299320--14299349
4
7.5
4
92
0
51
70
0
3
26
1.03
14304949--14305015
11
6.4
11
72
19
54
35
2
0
61
1.12
14304919--14305042
40
3.0
41
87
7
162
37
2
0
60
1.10
14304959--14305023
31
2.1
30
91
8
105
35
3
0
61
1.12
14307570--14307617
15
3.1
15
82
8
53
60
12
6
20
1.54
14309069--14309606
132
4.1
132
96
0
986
26
24
18
30
1.98
14309339--14309540
44
4.6
44
70
11
153
26
25
18
29
1.98
14309574--14309734
46
3.5
46
87
2
207
30
27
16
25
1.96
14309591--14309734
46
3.1
46
88
1
216
29
29
15
26
1.96
14310956--14310998
8
5.4
8
89
10
70
11
11
0
76
1.02
14310947--14310990
15
3.0
15
93
3
72
13
13
0
72
1.12
14310947--14311001
23
2.4
22
85
8
74
14
14
0
70
1.16
14311838--14311870
11
3.1
11
86
8
50
9
0
3
87
0.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14312544--14312580
17
2.1
18
90
5
58
45
0
24
29
1.53
14316619--14316666
15
3.1
15
82
8
53
60
12
6
20
1.54
14321637--14321662
7
3.7
7
100
0
52
15
30
11
42
1.82
14323458--14323527
29
2.3
30
80
11
81
47
11
10
31
1.73
14325102--14325142
21
2.0
20
90
4
64
19
0
4
75
0.98
14325940--14325991
15
3.5
15
82
10
70
73
0
1
25
0.94
14325939--14325983
21
2.1
21
87
0
63
75
0
2
22
0.91
14326589--14326636
25
2.0
24
83
4
60
33
20
6
39
1.78
14327503--14327545
22
2.0
22
86
9
61
58
6
0
34
1.25
14327852--14327877
13
2.0
13
100
0
52
15
15
30
38
1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204