Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 ID=Chr07-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  60982465

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  172  of  204  ( 24458 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51428348--51428372
7
3.6
7
100
0
50
88
0
0
12
0.53
51429846--51430170
128
2.5
129
87
1
463
30
22
20
26
1.98
51429846--51430254
85
4.8
85
75
11
332
31
22
20
26
1.98
51429846--51430216
44
8.7
44
71
9
266
31
22
19
26
1.98
51431667--51431727
3
19.0
3
80
15
61
29
4
3
62
1.32
51433042--51433097
27
2.1
27
82
0
67
50
12
3
33
1.58
51433239--51433300
11
5.9
11
74
14
51
58
0
3
38
1.15
51436077--51436148
27
2.5
29
86
8
103
45
5
2
45
1.41
51436077--51436164
30
3.0
30
85
6
119
44
7
2
45
1.45
51436441--51436468
13
2.2
13
100
0
56
35
0
7
57
1.26
51439502--51439540
19
2.1
19
85
9
53
43
0
12
43
1.42
51439621--51439732
46
2.5
46
89
4
176
35
15
22
26
1.94
51441031--51441070
2
20.0
2
94
0
71
50
2
0
47
1.14
51441463--51441520
19
3.0
19
87
7
82
55
6
0
37
1.27
51441509--51441551
18
2.3
18
96
4
77
44
0
0
55
0.99
51443504--51443586
41
2.0
41
95
0
148
43
25
8
22
1.81
51446358--51446411
25
2.2
25
90
3
83
22
29
16
31
1.96
51451985--51452053
34
2.0
34
97
0
129
33
5
15
44
1.71
51463838--51463870
5
6.6
5
100
0
66
21
0
0
78
0.75
51476756--51476785
12
2.5
12
94
0
51
83
6
3
6
0.90
51483721--51483790
21
3.5
20
75
16
65
14
10
1
74
1.14
51483745--51483784
17
2.4
17
91
0
62
12
5
2
80
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51483707--51483797
38
2.5
36
78
16
98
14
7
1
76
1.05
51483702--51483821
8
14.9
8
68
14
68
15
5
1
76
1.05
51483707--51483794
17
4.9
17
74
16
54
14
7
1
76
1.07
51483868--51483960
20
4.3
21
81
9
98
45
0
2
52
1.12
51483877--51483978
41
2.5
42
81
10
106
45
0
2
51
1.16
51483987--51484052
31
2.2
29
82
15
82
39
0
3
57
1.14
51483987--51484052
30
2.2
30
82
15
84
39
0
3
57
1.14
51491398--51491710
85
3.7
84
86
4
398
30
21
23
25
1.99
51491398--51491711
42
7.4
42
86
7
377
29
21
22
25
1.99
51491403--51491710
127
2.4
127
86
7
394
30
21
23
24
1.99
51492136--51492171
12
3.0
12
95
0
63
2
38
16
41
1.63
51492160--51492208
21
2.3
21
92
0
80
4
36
20
38
1.72
51498366--51498418
7
7.0
7
91
8
70
30
0
16
52
1.44
51498373--51498957
9
65.2
9
78
6
539
30
2
18
48
1.60
51498986--51499038
8
6.0
8
76
20
52
32
0
11
56
1.35
51498985--51499091
29
3.6
29
80
10
117
34
0
12
53
1.38
51498985--51499058
37
2.0
37
84
5
96
36
0
10
52
1.36
51498985--51499091
32
3.6
29
82
10
126
34
0
12
53
1.38
51498995--51499091
21
4.7
20
73
13
70
35
0
11
53
1.37
51499048--51499091
22
2.0
23
86
4
63
31
0
13
54
1.39
51499070--51499132
9
6.7
9
71
10
54
33
4
17
44
1.70
51499349--51499389
16
2.7
15
85
7
55
51
7
0
41
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51499396--51499428
17
1.9
17
100
0
66
51
6
6
36
1.51
51504162--51504776
113
5.4
113
76
8
640
27
20
17
34
1.95
51504126--51504776
227
2.9
227
95
0
1171
26
20
18
34
1.95
51508259--51508391
30
4.4
30
88
0
176
28
25
18
27
1.98
51511729--51511783
12
4.0
13
75
25
51
50
1
0
47
1.11
51511781--51511815
12
3.0
11
84
15
52
62
0
0
37
0.95
51511781--51511815
13
2.8
13
91
8
56
62
0
0
37
0.95
51511759--51511822
33
1.9
34
84
15
89
60
0
0
39
0.97
51511850--51511945
24
3.9
24
93
2
147
57
2
0
40
1.10
51511871--51511950
14
6.3
13
74
24
73
58
2
0
38
1.11
51511885--51511929
10
4.1
10
79
20
54
60
2
0
37
1.09
51511981--51512043
21
3.0
20
78
19
67
53
1
0
44
1.10
51511990--51512045
20
2.8
20
84
10
62
57
1
0
41
1.09
51512004--51512118
33
3.3
33
87
11
144
59
1
0
39
1.08
51512041--51512086
22
2.1
22
84
8
58
60
2
0
36
1.09
51512443--51512487
19
2.3
20
88
3
65
55
0
2
42
1.12
51512443--51512495
21
2.6
21
84
3
63
52
0
3
43
1.19
51512525--51512615
36
2.5
36
74
13
89
54
2
2
40
1.24
51512581--51512628
22
2.1
24
88
7
73
62
0
0
37
0.95
51512713--51512761
25
2.0
25
83
0
62
75
2
12
10
1.13
51513087--51513159
36
2.1
36
84
5
96
28
10
8
52
1.65
51516187--51516224
19
2.0
19
89
0
58
36
5
7
50
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51516444--51516520
27
2.9
28
90
3
115
19
38
24
16
1.92
51535715--51535798
34
2.5
34
86
9
118
44
0
11
44
1.41
51535870--51536141
126
2.1
127
87
4
381
37
15
15
31
1.90
51539070--51539100
9
3.6
9
91
8
55
64
0
0
35
0.94
51539121--51539177
25
2.3
24
80
11
71
54
3
0
42
1.17
51539062--51539185
54
2.3
54
84
4
151
50
6
0
41
1.33
51539125--51539313
93
2.0
92
97
1
360
55
4
3
37
1.37
51544546--51544573
7
4.0
7
100
0
56
71
0
0
28
0.86
51549029--51549125
26
3.9
25
75
13
83
26
23
17
31
1.97
51556109--51556454
9
40.9
9
66
21
128
33
1
19
45
1.61
51556122--51556460
25
13.7
25
69
13
152
33
1
19
45
1.59
51556110--51556241
50
2.6
50
86
3
183
33
2
21
43
1.65
51556226--51556302
32
2.3
34
80
17
97
41
0
15
42
1.47
51556251--51556293
12
4.0
11
77
17
54
41
0
11
46
1.40
51556278--51556302
13
1.9
13
100
0
50
36
0
16
48
1.46
51556222--51556365
52
2.7
51
81
13
141
36
0
17
45
1.53
51556353--51556432
16
4.9
16
78
6
61
31
1
20
47
1.58
51556462--51556491
12
2.6
11
90
10
51
43
0
10
46
1.37
51556901--51556941
19
2.2
19
86
8
57
51
2
0
46
1.14
51556912--51556966
22
2.5
22
80
8
67
54
1
1
41
1.21
51556912--51556965
23
2.5
22
81
6
65
53
1
1
42
1.22
51556926--51556987
25
2.5
25
75
15
65
48
3
4
43
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51559607--51559673
20
3.2
21
75
14
59
49
0
7
43
1.31
51560361--51560429
8
8.9
8
81
9
81
36
46
0
17
1.48
51560594--51560758
89
1.9
89
94
1
296
45
26
1
26
1.61
51560682--51560820
63
2.2
63
92
0
224
47
22
0
30
1.51
51560857--51560890
14
2.4
14
90
0
50
35
50
0
14
1.44
51560921--51560952
14
2.2
15
94
5
57
37
31
0
31
1.58
51561290--51561373
42
2.0
42
100
0
168
59
9
9
21
1.57
51561379--51561653
41
6.7
41
79
6
279
31
21
21
25
1.98
51561379--51561627
123
2.0
122
84
4
322
31
22
22
24
1.98
51561691--51561785
39
2.4
41
79
10
108
25
17
22
34
1.96
51566066--51566095
15
2.1
14
93
6
51
6
20
6
66
1.38
51569667--51569732
35
1.9
34
87
6
98
34
7
12
45
1.70
51570844--51570887
22
2.0
21
86
13
61
61
0
0
38
0.96
51577990--51578045
26
2.2
25
87
9
78
58
1
12
26
1.44
51578036--51578096
3
20.3
3
100
0
122
67
0
0
32
0.91
51578171--51578273
3
35.3
3
76
9
97
60
1
3
33
1.26
51578171--51578272
53
1.9
52
84
9
136
59
1
3
34
1.27
51578205--51578275
35
2.1
35
86
7
101
61
2
2
32
1.24
51581356--51581463
42
2.6
42
84
10
139
23
30
13
32
1.93
51581551--51581594
6
7.7
6
82
10
56
0
22
0
77
0.77
51581553--51581594
11
3.7
11
83
3
57
0
21
0
78
0.75
51581565--51581621
17
3.2
18
85
7
64
8
21
0
70
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51581582--51581621
18
2.2
19
86
8
57
12
17
0
70
1.18
51584970--51585013
19
2.4
18
85
11
54
63
9
11
15
1.51
51585920--51585975
26
2.2
25
84
9
69
58
1
10
28
1.41
51585969--51586017
3
16.3
3
100
0
98
67
0
0
32
0.91
51586118--51586226
3
37.3
3
80
9
127
62
0
3
33
1.19
51587401--51587499
41
2.6
37
88
6
135
46
21
9
23
1.79
51587401--51587503
37
2.7
38
89
6
145
45
21
8
24
1.80
51587979--51588026
19
2.5
20
82
6
62
62
2
0
35
1.07
51587989--51588070
29
2.9
27
75
12
74
56
0
2
41
1.13
51588060--51588130
9
7.3
10
73
12
51
63
1
4
30
1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204