Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 ID=Chr07-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  60982465

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  201  of  204  ( 24458 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59596978--59597035
25
2.3
25
96
0
107
31
0
22
46
1.52
59597162--59597216
29
1.9
28
81
3
65
40
9
7
43
1.64
59610146--59610211
25
2.5
27
80
9
66
57
0
3
39
1.14
59613366--59613427
3
20.7
3
79
0
70
35
0
4
59
1.19
59613366--59613419
21
2.6
21
87
0
81
37
0
3
59
1.15
59623929--59624081
72
2.1
72
95
2
272
24
26
15
33
1.95
59635331--59635364
12
2.9
12
91
4
52
26
20
0
52
1.46
59637873--59637944
36
2.0
36
100
0
144
22
27
22
27
1.99
59644438--59644483
17
2.5
19
83
16
62
60
0
2
36
1.09
59654375--59654415
12
3.6
12
77
12
50
60
4
0
34
1.18
59655248--59655354
44
2.4
44
84
3
135
15
29
19
34
1.93
59659928--59659975
16
3.1
16
79
5
55
66
0
0
33
0.92
59659928--59659974
20
2.5
19
80
13
53
65
0
0
34
0.93
59665974--59666000
14
1.9
14
100
0
54
22
0
48
29
1.51
59683089--59683148
31
1.9
31
86
6
86
45
3
5
46
1.41
59684155--59684205
15
2.9
18
77
19
63
33
23
11
31
1.91
59684148--59684200
15
3.3
15
76
19
61
30
26
9
33
1.88
59688515--59688566
24
2.2
24
89
0
77
38
3
5
51
1.44
59688532--59688578
24
2.0
24
83
8
60
38
6
12
42
1.69
59690158--59690250
45
2.0
45
86
10
127
41
7
3
47
1.48
59696514--59696548
15
2.4
15
90
4
54
34
8
0
57
1.29
59697204--59697506
106
2.8
106
83
1
374
32
17
17
33
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59701105--59701144
21
1.9
21
89
0
62
35
0
2
62
1.09
59702069--59702214
71
2.1
71
98
0
283
34
14
10
40
1.80
59702505--59702543
20
2.0
20
89
0
60
61
0
0
38
0.96
59702631--59702665
18
1.9
18
88
0
52
48
0
5
45
1.26
59707614--59707638
3
8.3
3
100
0
50
32
0
36
32
1.58
59709395--59709495
49
2.1
49
81
7
118
56
0
4
38
1.21
59709820--59709858
3
13.7
3
89
10
64
30
0
0
69
0.89
59709813--59709859
14
3.4
13
88
8
58
27
0
2
70
0.99
59709820--59709858
17
2.3
17
95
0
69
30
0
0
69
0.89
59710311--59710360
2
25.0
2
95
0
91
48
0
2
50
1.12
59710506--59710703
44
4.6
44
80
6
183
33
27
17
20
1.95
59710595--59710786
84
2.3
83
89
2
280
34
25
17
23
1.96
59710596--59710785
41
4.6
41
83
6
222
34
25
17
23
1.96
59713109--59713141
2
16.5
2
100
0
66
48
0
0
51
1.00
59722546--59722609
3
21.3
3
100
0
128
34
0
32
32
1.58
59723279--59723561
144
2.0
144
91
1
460
27
18
23
30
1.97
59728347--59728407
30
2.0
30
96
0
113
27
19
11
40
1.86
59729640--59729673
17
1.9
18
88
5
52
32
2
5
58
1.37
59740179--59740208
11
2.7
11
89
0
51
66
0
0
33
0.92
59744539--59744576
20
1.9
20
94
0
67
63
0
0
36
0.95
59753269--59753328
28
2.2
27
80
16
70
51
5
0
43
1.23
59761119--59761167
3
16.3
3
100
0
98
32
0
34
32
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59763762--59763810
18
2.5
20
80
12
57
42
4
6
46
1.47
59770090--59770160
28
2.5
26
78
15
70
32
12
4
50
1.59
59772567--59772596
13
2.3
13
100
0
60
36
6
6
50
1.55
59791385--59791422
20
1.9
20
88
0
58
39
0
0
60
0.97
59799973--59800013
21
2.0
21
86
9
59
2
24
2
70
1.11
59803206--59803451
120
2.0
120
97
0
465
22
22
20
34
1.97
59813247--59813287
20
2.0
21
90
4
66
36
0
4
58
1.20
59814882--59814914
15
2.2
15
89
10
50
72
0
6
21
1.05
59819560--59819646
42
2.1
42
97
0
165
47
18
11
22
1.81
59826844--59826869
10
2.6
10
100
0
52
73
0
7
19
1.07
59828922--59829578
216
3.0
216
98
0
1251
30
20
19
28
1.97
59832998--59833035
16
2.4
16
86
4
51
52
5
2
39
1.38
59836894--59836970
30
2.4
32
83
12
97
40
1
0
58
1.06
59840924--59840988
31
2.1
31
100
0
130
23
27
20
29
1.98
59841070--59841174
50
2.1
50
96
0
192
35
7
9
47
1.65
59841292--59841320
2
14.5
2
100
0
58
51
0
0
48
1.00
59841602--59841668
30
2.2
32
86
10
95
53
7
0
38
1.29
59843038--59843120
30
2.8
30
80
8
98
56
0
2
40
1.12
59843026--59843090
25
2.9
22
78
14
71
49
0
0
50
1.00
59846146--59846240
48
2.0
48
87
8
140
42
27
14
15
1.86
59847449--59847540
48
1.9
48
84
8
125
43
26
13
17
1.85
59856123--59856174
26
2.0
26
100
0
104
26
15
23
34
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59862394--59862458
29
2.1
30
83
8
78
40
3
1
55
1.25
59862412--59862451
22
1.9
21
90
10
64
32
0
2
65
1.06
59864502--59864556
3
18.3
3
100
0
110
32
0
0
67
0.91
59864815--59864855
21
2.0
21
100
0
82
43
9
9
36
1.71
59869997--59870029
16
2.1
16
100
0
66
63
6
0
30
1.18
59891023--59891069
10
4.5
10
79
15
51
38
2
0
59
1.09
59891018--59891059
22
2.0
22
90
9
70
42
2
0
54
1.13
59891376--59891400
2
12.5
2
100
0
50
48
0
0
52
1.00
59891633--59891697
26
2.5
24
76
13
67
43
1
0
55
1.09
59891620--59891684
26
2.3
28
84
10
80
46
3
0
50
1.17
59893419--59893478
27
2.2
28
85
5
79
41
1
3
53
1.27
59894960--59895243
102
2.8
102
86
3
378
27
16
27
28
1.97
59894960--59895296
51
6.7
50
74
12
244
27
16
26
28
1.97
59896324--59896367
2
22.0
2
95
0
79
47
0
2
50
1.13
59901535--59901976
216
2.0
216
93
1
762
30
17
21
31
1.96
59905772--59905806
2
17.5
2
100
0
70
51
0
0
48
1.00
59911008--59911471
225
2.1
225
97
0
874
29
20
21
28
1.98
59912858--59912892
12
3.0
12
87
4
54
54
0
20
25
1.45
59915263--59915308
12
3.3
14
82
17
60
32
0
2
65
1.05
59916494--59916576
30
2.8
30
80
8
98
56
0
2
40
1.12
59916482--59916546
25
2.9
22
78
14
71
49
0
0
50
1.00
59922450--59922479
3
10.0
3
92
0
51
30
33
0
36
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59929981--59930055
22
3.4
22
96
0
132
33
13
24
29
1.93
59930295--59930356
25
2.5
24
82
7
63
58
9
1
30
1.40
59934937--59934986
18
2.8
18
74
14
59
68
6
24
2
1.23
59939084--59939147
30
2.1
30
82
5
76
37
12
4
45
1.63
59939258--59939301
11
3.3
15
73
26
53
34
6
11
47
1.66
59941752--59941790
3
13.0
3
88
0
60
38
28
0
33
1.57
59941752--59941790
15
2.6
15
100
0
78
38
28
0
33
1.57
59946059--59946114
20
2.8
20
81
13
69
30
1
1
66
1.12
59946048--59946119
30
2.3
32
80
4
85
40
1
1
56
1.16
59948505--59948546
21
2.0
21
100
0
84
33
14
14
38
1.86
59967493--59967576
41
2.0
41
100
0
168
40
19
9
30
1.83
59970691--59970720
2
15.0
2
100
0
60
50
0
0
50
1.00
59971042--59971103
30
2.0
32
81
12
76
41
0
1
56
1.09
59973440--59973466
2
13.5
2
100
0
54
48
0
0
51
1.00
59974114--59974153
20
2.0
20
85
0
53
50
40
0
10
1.36
59977924--59977957
2
17.0
2
87
0
50
50
5
0
44
1.26
59981738--59981779
20
2.1
20
100
0
84
40
4
4
50
1.45
59986489--59986513
11
2.3
11
100
0
50
0
28
56
16
1.41
59986596--59986656
11
6.1
10
78
14
72
50
0
1
47
1.10
59986598--59986751
41
3.8
38
83
11
166
59
0
1
38
1.08
59986598--59986751
40
3.8
40
80
13
149
59
0
1
38
1.08
59986596--59986737
50
2.8
49
80
15
146
57
0
2
40
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59986596--59986695
11
9.9
11
70
24
69
56
0
1
43
1.06
59986642--59986764
41
3.0
39
79
12
133
61
0
1
36
1.06
59990298--59990351
28
1.9
28
96
0
99
31
3
9
55
1.49
59990303--59990359
28
2.0
28
93
0
96
35
1
8
54
1.42
59990342--59990433
20
4.6
20
69
15
55
46
2
6
44
1.41
59997003--59997065
25
2.4
26
84
10
76
15
6
4
73
1.21
60001472--60001519
2
24.0
2
100
0
96
50
0
0
50
1.00
60003564--60003595
17
1.9
16
93
6
55
37
9
6
46
1.61
60009073--60009122
15
3.3
15
81
10
66
40
24
20
16
1.91
60009074--60009127
5
10.8
5
84
7
56
40
22
20
16
1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204