genome.fa.s7.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 ID=Chr07-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  60982465

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  118  of  204  ( 24458 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36028855--36029478	182	3.4	182	92	0	1007	41	25	3	29	1.71
36033296--36033338	21	2.0	21	100	0	86	37	4	18	39	1.72
36035143--36035296	39	3.9	39	93	0	245	40	16	9	33	1.82
36035394--36035478	43	2.0	43	95	0	152	29	28	17	24	1.97
36044786--36045156	105	3.6	104	93	1	611	19	20	29	30	1.97
36051474--36051820	105	3.3	104	93	2	554	31	29	19	19	1.97
36058747--36059106	105	3.5	104	92	1	562	30	30	20	19	1.97
36058990--36059041	27	1.9	27	96	0	95	32	32	21	13	1.92
36059447--36059511	30	2.2	29	81	8	76	30	27	6	35	1.81
36059454--36059511	30	1.9	30	85	0	80	31	24	6	37	1.82
36061544--36061587	21	2.2	19	84	8	52	52	15	18	13	1.75
36061603--36061737	42	3.2	42	81	4	148	43	14	22	19	1.87
36061644--36061739	21	4.6	21	71	8	79	44	14	20	19	1.86
36061640--36061750	21	5.3	21	73	6	64	45	13	20	20	1.85
36061560--36061756	84	2.3	84	76	6	193	45	14	21	17	1.85
36067074--36067109	16	2.2	16	100	0	72	25	0	36	38	1.56
36067232--36067548	157	2.0	157	96	0	589	43	3	5	47	1.41
36067502--36067536	18	2.0	17	88	5	52	54	0	0	45	0.99
36069283--36069307	2	12.5	2	100	0	50	52	0	0	48	1.00
36072065--36072090	11	2.4	11	100	0	52	46	7	38	7	1.61
36080417--36080461	18	2.5	18	88	0	63	33	8	17	40	1.81
36080580--36080716	69	2.0	69	89	0	211	19	13	37	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36080693--36080747	18	3.1	18	78	0	56	18	9	41	30	1.81
36090347--36090457	19	5.8	19	86	0	168	38	9	14	37	1.78
36090354--36090457	38	2.7	38	96	0	190	39	8	13	38	1.75
36090354--36090476	19	6.4	20	80	10	143	39	8	13	38	1.75
36090354--36090476	38	3.2	37	86	13	171	39	8	13	38	1.75
36093341--36093386	24	1.9	24	86	0	65	45	17	26	10	1.81
36097310--36097697	132	2.9	132	89	1	584	28	18	23	28	1.98
36097998--36098041	19	2.5	17	85	14	54	31	13	20	34	1.92
36098008--36098141	19	6.8	19	83	5	169	38	8	14	38	1.77
36098015--36098118	38	2.7	38	96	0	190	39	8	13	38	1.75
36100982--36101023	22	2.0	21	86	13	59	64	4	7	23	1.38
36117742--36117855	41	2.8	39	81	10	129	29	18	28	23	1.98
36117737--36117855	43	2.8	42	80	9	136	28	19	27	24	1.98
36130344--36130390	26	1.9	23	83	12	58	31	17	17	34	1.92
36131173--36131235	29	2.2	29	91	0	99	17	39	23	19	1.92
36133504--36133691	95	2.0	94	92	1	313	40	25	5	28	1.78
36136262--36136318	22	2.7	20	74	15	53	38	0	1	59	1.08
36141247--36141304	17	3.6	16	79	9	55	8	8	5	77	1.11
36141258--36141304	12	3.7	12	76	23	51	8	8	4	78	1.07
36154727--36154864	42	3.5	43	72	23	147	32	28	17	21	1.96
36154690--36154901	76	2.8	75	91	0	325	31	27	19	21	1.98
36154876--36154928	27	2.0	27	92	0	88	26	26	26	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36154802--36155028	102	2.2	102	95	0	400	30	26	21	21	1.98
36158412--36158459	26	1.9	25	83	8	62	66	12	10	10	1.44
36159381--36159436	7	7.9	7	84	9	69	67	0	12	19	1.22
36160678--36160885	44	4.7	44	93	0	344	27	21	26	24	1.99
36160849--36161227	129	2.9	129	92	1	618	31	18	24	25	1.98
36161242--36161517	44	6.3	44	70	6	159	26	21	24	27	1.99
36170198--36170243	20	2.3	21	81	11	60	28	15	8	47	1.74
36170446--36170496	20	2.5	20	75	6	50	29	11	15	43	1.82
36181344--36181651	51	6.0	51	82	3	332	30	10	20	38	1.86
36181528--36181616	27	3.4	26	67	21	69	30	5	23	40	1.78
36181371--36181651	153	1.8	153	86	1	411	30	10	20	38	1.86
36200556--36200585	2	15.0	2	100	0	60	50	0	0	50	1.00
36200657--36200760	37	2.8	37	80	0	127	17	13	29	39	1.88
36201933--36201996	25	2.6	25	87	5	85	28	21	26	23	1.99
36202147--36202219	36	2.0	36	97	0	137	47	17	5	28	1.70
36202515--36202547	17	1.9	17	93	0	57	36	18	3	42	1.66
36204044--36204082	20	2.0	20	94	0	69	43	17	10	28	1.82
36205981--36206031	21	2.5	21	83	3	59	19	25	25	29	1.99
36208140--36208176	18	2.1	18	94	0	65	54	0	2	43	1.14
36216432--36216479	23	2.3	20	75	21	53	29	16	8	45	1.76
36216438--36216482	23	2.0	23	95	0	81	28	13	8	48	1.72
36219097--36219287	50	3.7	50	85	4	229	25	22	29	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36219538--36219576	12	3.2	12	85	0	51	51	5	23	20	1.67
36221160--36221228	36	1.9	36	93	0	120	37	17	14	30	1.90
36222845--36222920	23	3.3	23	88	0	116	31	25	19	23	1.98
36223146--36223184	18	2.2	17	86	13	53	46	20	0	33	1.51
36224746--36224785	15	2.6	16	92	4	64	12	0	32	55	1.38
36224819--36224851	14	2.4	14	90	10	50	15	0	30	54	1.41
36224836--36224958	34	3.6	34	82	5	151	36	0	13	49	1.43
36224968--36225017	7	7.1	7	90	0	73	20	0	38	42	1.52
36224968--36225017	14	3.6	14	91	0	82	20	0	38	42	1.52
36224968--36225017	21	2.4	21	93	0	91	20	0	38	42	1.52
36225051--36225445	126	3.1	126	85	1	542	36	16	17	28	1.92
36230552--36230601	24	2.1	23	89	10	75	70	2	0	28	0.99
36231201--36231340	50	2.8	50	82	7	176	30	15	14	39	1.87
36233661--36233888	126	1.8	126	92	0	384	42	6	15	35	1.72
36233785--36233989	101	2.0	101	93	0	347	43	5	16	35	1.70
36235250--36235290	18	2.2	19	86	4	57	7	19	41	31	1.79
36236184--36236363	89	2.0	89	100	0	360	38	16	17	27	1.91
36244457--36244494	6	6.2	6	90	3	58	0	60	0	39	0.97
36244459--36244494	18	2.0	18	100	0	72	0	61	0	38	0.96
36247363--36247395	12	2.8	12	90	4	50	42	33	18	6	1.75
36255368--36255450	43	1.9	44	82	2	105	24	21	10	43	1.84
36257267--36257295	9	3.2	9	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36257527--36257581	24	2.3	23	75	6	56	49	0	0	50	1.00
36259261--36259314	20	2.7	21	80	8	67	48	16	7	27	1.73
36259755--36259835	41	2.0	40	87	2	117	24	27	9	38	1.87
36260277--36261330	152	6.9	153	88	5	1463	51	7	9	30	1.63
36265065--36265105	15	2.5	17	88	7	59	39	0	4	56	1.21
36265776--36265840	3	21.7	3	100	0	130	67	0	0	32	0.91
36266256--36266315	28	2.1	28	84	6	77	25	15	10	50	1.74
36278508--36278541	17	2.0	17	88	0	50	11	11	17	58	1.62
36296252--36296305	26	2.1	26	89	0	81	42	14	9	33	1.78
36310461--36310601	72	2.0	72	95	0	255	33	12	14	39	1.84
36312516--36312611	37	2.6	38	81	1	113	17	11	38	32	1.86
36313873--36313916	22	2.0	22	86	8	63	9	20	25	45	1.80
36313974--36314319	42	8.2	43	89	3	497	25	33	19	21	1.97
36313974--36314319	85	4.1	84	89	2	496	25	33	19	21	1.97
36314350--36314403	22	2.3	23	81	9	65	44	0	7	48	1.31
36314438--36314504	35	1.9	35	81	6	82	55	1	2	40	1.24
36317930--36317988	30	2.0	29	90	6	93	50	5	1	42	1.34
36318721--36318788	7	9.6	7	83	3	82	50	30	0	19	1.48
36318913--36319047	66	2.0	67	97	1	254	42	7	5	45	1.54
36319168--36319323	41	3.8	41	89	4	251	26	30	25	17	1.97
36319168--36319323	83	1.9	82	90	4	251	26	30	25	17	1.97
36319382--36319514	40	3.3	40	81	10	155	23	26	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36320316--36320371	19	2.9	19	76	7	60	51	3	16	28	1.60
36322624--36322743	20	5.4	21	72	16	75	13	17	27	41	1.87
36323943--36324017	29	2.6	29	91	0	123	32	17	20	30	1.95
36327707--36327736	12	2.5	12	94	0	51	6	30	40	23	1.80
36329235--36329367	50	2.6	51	83	3	153	24	18	26	30	1.97
36329235--36329376	51	2.8	50	82	3	169	24	18	27	29	1.98
36329594--36329625	16	2.0	16	93	0	55	59	0	15	25	1.36
36340255--36340461	103	2.0	103	97	0	387	20	16	22	40	1.92
36344613--36344663	25	2.0	25	100	0	102	49	3	19	27	1.66
36344734--36344775	20	2.2	19	83	12	50	59	0	19	21	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204