genome.fa.s7.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 ID=Chr07-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  60982465

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  146  of  204  ( 24458 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44042089--44042130	13	3.4	13	87	12	70	78	7	0	14	0.95
44042089--44042144	24	2.3	24	87	6	78	75	7	3	14	1.16
44043086--44043152	23	3.2	22	76	15	63	71	0	19	8	1.12
44043123--44043152	10	3.1	10	90	9	53	83	0	16	0	0.65
44043123--44043221	6	15.8	6	71	8	72	72	2	18	7	1.17
44050796--44050908	25	4.5	25	77	8	95	23	24	19	31	1.98
44060229--44060253	11	2.3	11	100	0	50	28	0	12	60	1.32
44085059--44085088	6	5.0	6	100	0	60	66	0	0	33	0.92
44090420--44090484	16	3.4	19	80	20	82	23	0	0	76	0.78
44090432--44090495	30	2.1	30	86	13	87	25	0	1	73	0.92
44090408--44090491	38	2.2	36	82	17	109	20	1	1	77	0.90
44090427--44090482	8	7.2	8	95	4	98	25	0	0	75	0.81
44090466--44090504	20	2.0	20	89	0	60	23	2	2	71	1.10
44090408--44090506	27	3.9	25	81	15	82	21	2	1	75	0.96
44091604--44091922	107	2.9	107	80	10	342	32	13	22	31	1.92
44093683--44093713	9	3.4	9	90	0	53	25	12	22	38	1.90
44093767--44093803	9	4.1	9	92	0	65	48	10	8	32	1.67
44097061--44097086	5	5.2	5	100	0	52	19	19	19	42	1.90
44099554--44099586	17	1.9	17	93	0	57	33	12	15	39	1.84
44100038--44100067	6	5.0	6	91	0	51	33	0	3	63	1.11
44101425--44101486	25	2.5	24	81	2	79	22	19	24	33	1.97
44103605--44103721	58	2.0	58	93	0	198	23	17	1	57	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44106342--44106457	18	6.4	17	74	20	101	61	0	0	37	1.02
44106354--44106428	10	7.6	10	76	18	68	60	0	1	38	1.06
44106335--44106454	39	3.2	37	83	14	149	62	0	0	36	1.01
44106335--44106456	38	3.3	36	86	11	158	61	0	0	37	1.02
44114713--44114741	14	2.0	15	93	6	51	37	20	20	20	1.94
44119104--44119147	3	14.3	3	95	4	79	65	0	34	0	0.93
44119430--44119565	41	3.3	41	85	4	150	20	22	25	32	1.98
44119452--44119581	41	3.2	42	80	10	119	20	20	25	34	1.96
44120273--44120326	25	2.2	25	96	0	99	24	9	20	46	1.79
44120594--44120653	27	2.2	28	82	8	72	46	5	5	43	1.47
44121082--44121328	115	2.1	117	81	3	284	26	17	19	36	1.94
44124019--44124087	21	3.3	21	87	0	93	36	18	42	2	1.66
44124523--44124614	42	2.2	42	82	5	105	25	21	25	28	1.99
44124536--44124722	43	4.4	42	83	9	193	25	22	21	29	1.99
44124722--44124757	15	2.4	15	90	0	54	13	19	33	33	1.91
44124730--44124760	15	2.1	15	100	0	62	6	22	38	32	1.80
44124809--44124852	22	2.0	22	81	0	52	45	27	15	11	1.81
44128090--44128122	16	2.1	16	100	0	66	45	0	6	48	1.27
44129125--44129189	23	2.9	23	86	13	84	41	0	1	56	1.08
44129136--44129204	19	3.3	19	80	15	66	47	0	0	52	1.00
44129267--44129303	18	2.0	19	89	5	58	32	8	0	59	1.27
44129455--44129510	20	2.7	21	75	10	60	64	0	3	32	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44130056--44130182	63	2.0	65	87	6	188	27	20	15	36	1.93
44130447--44130754	90	3.4	90	86	0	438	51	14	7	26	1.69
44133354--44133403	18	2.7	18	84	3	64	42	0	18	40	1.50
44134129--44134349	111	2.0	112	84	6	297	31	19	19	29	1.97
44137214--44137310	30	3.2	30	86	0	131	22	23	24	28	1.99
44140510--44140612	16	6.2	16	74	21	70	56	0	0	41	1.12
44140510--44140582	8	8.4	8	76	13	65	56	1	1	41	1.16
44140549--44140586	18	2.2	17	90	4	58	63	0	0	36	0.95
44140510--44140614	8	11.7	9	70	21	53	56	0	0	41	1.12
44140542--44140625	29	2.9	28	83	13	100	59	2	0	38	1.10
44140621--44140801	70	2.7	66	71	19	169	59	4	3	32	1.35
44140688--44140736	12	4.4	12	78	17	61	69	6	0	24	1.11
44140684--44140768	21	4.0	21	79	13	93	67	4	0	28	1.11
44140727--44140758	7	4.6	7	96	0	55	68	0	0	31	0.90
44142168--44142193	7	3.7	7	100	0	52	30	15	15	38	1.88
44145558--44145597	19	2.0	20	85	14	55	62	2	12	22	1.42
44146949--44148063	94	11.9	93	83	4	1221	28	19	19	32	1.96
44146986--44148063	50	23.1	44	66	20	320	29	20	19	31	1.96
44146994--44148063	374	2.9	373	85	4	1375	29	20	19	31	1.96
44146994--44148063	468	2.3	468	85	3	1453	29	20	19	31	1.96
44157573--44157723	74	2.0	74	94	0	266	60	6	17	15	1.56
44158673--44158737	32	2.0	32	96	0	121	52	9	13	24	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44165100--44165134	16	2.4	14	90	9	52	48	0	2	48	1.16
44170233--44170333	30	3.3	30	71	16	100	52	7	7	31	1.59
44172366--44172402	9	4.1	9	92	0	65	29	10	13	45	1.77
44173748--44173790	2	21.5	2	100	0	86	48	0	0	51	1.00
44189987--44190054	21	3.1	21	77	8	66	54	10	23	11	1.67
44198945--44198995	21	2.4	21	90	0	75	35	15	47	1	1.57
44199377--44199541	42	3.9	43	74	9	151	34	20	20	24	1.96
44201172--44201214	21	2.0	21	90	0	68	27	6	16	48	1.71
44204250--44204406	43	3.7	42	79	10	160	25	17	28	28	1.98
44204291--44204405	41	2.7	43	81	9	130	26	19	26	26	1.99
44212238--44212281	12	3.7	12	81	0	52	63	0	0	36	0.95
44212239--44212297	24	2.4	25	82	8	75	61	1	0	37	1.07
44212253--44212294	22	2.0	21	90	4	66	57	2	0	40	1.12
44212245--44212302	31	1.9	30	86	10	82	58	1	0	39	1.08
44212240--44212307	15	4.5	15	71	14	50	57	1	1	39	1.17
44216271--44216583	105	3.0	105	85	5	393	28	15	11	45	1.80
44222107--44222212	53	2.0	53	96	0	194	58	15	20	5	1.57
44223683--44223732	26	2.0	26	84	7	68	28	0	6	66	1.15
44226799--44226846	17	2.9	16	85	11	62	72	0	27	0	0.84
44226932--44227151	80	2.7	81	90	6	295	30	0	13	55	1.42
44226975--44227023	21	2.3	22	89	7	82	28	2	10	59	1.41
44227058--44227098	19	2.2	19	100	0	82	31	0	14	53	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44226958--44227151	80	2.4	81	94	4	338	29	0	13	55	1.43
44227504--44227536	15	2.2	15	100	0	66	33	6	27	33	1.81
44230168--44230236	27	2.5	28	79	6	79	21	36	20	21	1.95
44235354--44235482	51	2.5	51	81	9	131	22	17	27	32	1.96
44235299--44235537	101	2.4	101	81	1	255	24	17	28	30	1.97
44249984--44250255	82	3.4	80	81	6	282	46	11	13	28	1.78
44250054--44250407	87	4.2	87	78	8	216	45	9	12	32	1.74
44251129--44251182	20	2.7	20	82	0	63	55	7	3	33	1.45
44252234--44252271	18	2.2	18	85	4	51	50	5	2	42	1.39
44277721--44277747	13	2.1	13	100	0	54	70	14	0	14	1.17
44283601--44283632	15	2.1	16	94	5	57	43	9	6	40	1.62
44285837--44285867	14	2.1	15	94	5	55	70	0	0	29	0.87
44291595--44291626	17	1.9	16	93	6	55	28	37	18	15	1.92
44292917--44293271	36	9.8	36	77	11	208	25	20	15	38	1.92
44292968--44293271	73	4.2	73	78	9	309	25	21	16	37	1.93
44292946--44293241	146	2.0	145	82	7	359	25	21	15	37	1.93
44292968--44293241	109	2.5	109	81	9	292	25	21	15	37	1.93
44292953--44293278	109	3.0	106	77	13	290	24	20	16	38	1.93
44293965--44293996	13	2.5	13	94	0	55	37	9	34	18	1.83
44294755--44294811	18	3.2	18	75	9	62	22	28	7	42	1.80
44294766--44294818	18	2.9	20	76	18	62	26	28	5	39	1.79
44302924--44302960	17	2.1	19	85	10	51	35	2	16	45	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44303631--44303655	13	1.9	13	100	0	50	16	28	16	40	1.89
44304693--44304740	25	1.9	25	82	0	60	35	12	16	35	1.87
44311252--44311300	18	2.7	18	84	6	55	40	4	16	38	1.67
44318615--44318724	28	3.6	33	85	9	98	24	21	29	24	1.99
44318647--44318724	28	2.8	28	96	1	140	24	21	29	24	1.99
44318652--44318743	28	3.3	28	92	0	139	25	21	28	25	1.99
44319082--44319220	54	2.6	53	82	8	149	17	16	18	46	1.84
44319080--44319220	27	5.2	27	75	10	119	17	17	18	46	1.84
44320238--44320360	60	2.0	60	100	0	246	49	3	39	8	1.49
44323240--44323286	16	2.7	17	80	9	51	53	6	6	34	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204