Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 ID=Chr07-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  60982465

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  181  of  204  ( 24458 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53466971--53467017
23
2.3
19
82
17
51
42
21
0
36
1.53
53487237--53487262
3
8.7
3
100
0
52
0
34
0
65
0.93
53489399--53489428
5
6.0
5
92
0
51
20
36
23
20
1.95
53489400--53489428
15
1.9
15
100
0
58
20
34
24
20
1.97
53496098--53496125
2
14.0
2
100
0
56
50
0
0
50
1.00
53498732--53498774
22
2.0
22
100
0
86
48
0
13
37
1.43
53504504--53504548
20
2.3
20
88
7
67
46
0
24
28
1.53
53505359--53505383
13
1.9
13
100
0
50
36
32
24
8
1.84
53505354--53505417
30
2.1
30
91
0
101
28
26
28
17
1.97
53505879--53505980
49
2.1
49
90
0
159
42
6
22
28
1.79
53507474--53507632
44
3.6
44
82
10
193
23
16
27
32
1.96
53515135--53515179
21
2.3
21
85
11
60
33
2
0
64
1.06
53515155--53515274
57
2.1
59
84
6
158
44
0
2
53
1.14
53515844--53515905
29
2.1
30
90
3
99
29
3
11
56
1.50
53516841--53516902
30
2.1
30
90
0
97
58
14
3
24
1.51
53518537--53518571
17
2.1
17
88
0
52
65
22
5
5
1.36
53518516--53518610
25
3.7
25
72
8
91
58
16
7
16
1.59
53519423--53519456
18
2.0
16
88
11
50
64
0
23
11
1.26
53526441--53526470
2
15.0
2
100
0
60
50
0
0
50
1.00
53527514--53527576
21
3.0
22
88
6
94
30
22
15
31
1.95
53532111--53532144
16
2.1
16
89
10
52
58
5
0
35
1.22
53532897--53532947
21
2.4
21
80
0
57
43
33
1
21
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53532880--53532972
28
3.3
28
74
4
71
47
34
1
17
1.55
53534008--53534033
7
3.7
7
100
0
52
42
0
0
57
0.98
53534463--53534562
25
4.0
25
81
0
101
49
16
25
10
1.76
53537176--53537220
19
2.3
20
84
3
56
53
0
0
46
1.00
53537239--53537444
107
1.9
107
91
2
333
46
12
7
33
1.69
53537619--53537654
17
2.1
17
94
0
63
41
19
16
22
1.90
53539231--53539270
20
2.0
21
90
5
64
35
2
30
32
1.71
53543398--53543423
13
2.0
13
100
0
52
46
0
7
46
1.31
53544172--53544206
6
5.5
6
90
10
52
80
5
14
0
0.89
53544744--53544777
14
2.5
14
90
4
52
2
11
50
35
1.54
53544711--53544802
44
2.1
44
97
0
175
9
8
40
41
1.69
53545483--53546011
132
4.0
132
90
1
801
25
25
20
28
1.99
53545808--53545993
44
4.2
44
68
10
119
25
27
20
26
1.99
53551205--53551243
16
2.4
16
82
0
51
74
7
15
2
1.15
53557474--53557512
16
2.4
16
82
0
51
74
7
15
2
1.15
53561351--53561494
71
2.0
71
97
0
270
32
13
22
30
1.93
53563702--53563737
5
7.2
5
93
0
63
2
0
77
19
0.88
53563697--53563737
15
2.7
15
88
0
64
7
0
73
19
1.07
53567527--53567567
21
1.9
22
95
5
75
53
4
2
39
1.35
53567526--53567573
21
2.3
21
85
7
71
58
4
2
35
1.29
53570685--53570811
63
2.0
63
100
0
254
55
12
4
26
1.56
53571738--53571793
21
2.7
21
77
0
67
28
10
33
26
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53571945--53572019
22
3.3
23
72
17
66
48
2
1
48
1.24
53572533--53572576
20
2.1
21
83
4
54
61
2
2
34
1.21
53582501--53582544
23
1.9
23
100
0
88
45
11
6
36
1.67
53590110--53590154
2
24.0
2
84
13
60
53
0
0
46
1.00
53590362--53590399
3
12.3
3
94
5
67
65
2
0
31
1.06
53590444--53590476
17
1.9
17
88
11
50
66
12
0
21
1.23
53595478--53595517
20
2.0
20
85
9
55
45
0
0
55
0.99
53595753--53595803
23
2.1
25
82
13
63
47
1
7
43
1.43
53601919--53601966
22
2.2
22
85
3
62
25
12
20
41
1.87
53602828--53602900
23
3.3
23
66
11
71
45
2
4
47
1.36
53603343--53603472
66
1.9
69
87
4
194
30
8
10
50
1.65
53606461--53606495
18
2.0
17
88
5
52
45
0
0
54
0.99
53606731--53606766
16
2.2
16
100
0
72
38
36
0
25
1.56
53607523--53607570
16
2.9
16
73
14
53
62
8
0
29
1.24
53610687--53610723
9
4.1
9
92
0
65
29
10
13
45
1.77
53624101--53624139
20
1.9
21
89
5
62
43
0
0
56
0.99
53631066--53631110
15
3.0
15
83
6
56
35
13
0
51
1.41
53630308--53631595
657
2.0
657
95
0
2330
38
12
14
34
1.84
53635163--53635226
21
3.1
20
80
6
83
35
25
21
17
1.95
53635485--53635528
13
3.4
12
84
12
52
29
11
0
59
1.32
53636300--53636357
30
2.0
28
86
6
80
0
24
8
67
1.18
53637232--53637270
20
2.0
20
84
0
51
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53637234--53637272
18
2.1
18
85
4
51
48
0
0
51
1.00
53637497--53637556
23
2.5
26
79
15
67
48
1
6
43
1.39
53643739--53643773
16
2.2
16
89
0
52
71
0
0
28
0.86
53644002--53644059
23
2.5
24
80
11
66
34
0
5
60
1.19
53648504--53648579
20
3.9
20
70
15
61
26
6
1
65
1.24
53648585--53648646
28
2.2
28
91
2
99
38
0
0
61
0.96
53651995--53652037
22
2.0
22
100
0
86
23
25
13
37
1.92
53661517--53661556
7
5.7
7
96
0
71
55
15
0
30
1.41
53662550--53662622
37
2.0
37
89
2
112
31
23
0
45
1.53
53662842--53662898
3
19.0
3
100
0
114
66
0
0
33
0.92
53663628--53663666
16
2.5
15
87
8
51
17
12
0
69
1.19
53663862--53663894
2
16.5
2
100
0
66
48
0
0
51
1.00
53664840--53664918
11
7.2
11
79
14
92
49
1
25
24
1.58
53664831--53664918
33
2.6
33
79
12
99
48
1
25
25
1.58
53668237--53668294
27
2.1
28
80
3
64
51
1
0
46
1.11
53668799--53668873
10
7.9
10
69
11
59
62
0
2
34
1.09
53668987--53669032
20
2.2
20
84
3
56
63
0
4
32
1.14
53669051--53669094
21
2.1
21
83
8
54
27
9
0
63
1.24
53669487--53669531
7
6.3
7
89
5
54
82
0
11
6
0.84
53669493--53669524
15
2.1
15
94
0
55
84
0
12
3
0.74
53669487--53669536
22
2.2
22
85
3
64
82
0
10
8
0.86
53669497--53669538
7
6.0
7
89
8
50
78
0
11
9
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53675457--53675491
7
5.0
7
85
0
52
25
2
2
68
1.17
53676176--53676211
3
12.0
3
100
0
72
66
0
0
33
0.92
53679584--53679629
23
2.0
23
82
0
56
52
2
0
45
1.13
53681154--53681213
30
2.0
30
90
0
93
46
13
6
33
1.69
53687758--53687821
28
2.2
29
83
11
85
60
10
3
25
1.44
53696235--53696306
23
3.2
22
75
13
67
41
1
2
54
1.23
53700552--53700613
26
2.4
25
78
5
70
64
9
4
20
1.42
53701296--53701358
26
2.4
25
76
5
63
61
7
9
20
1.51
53708767--53709010
129
1.9
129
85
1
337
22
27
15
34
1.95
53711771--53711930
84
1.9
84
96
2
295
25
15
20
40
1.90
53713172--53713239
34
1.9
35
82
11
86
42
2
10
44
1.53
53715382--53715788
210
1.9
210
86
1
573
32
21
14
32
1.93
53720418--53720467
25
2.0
25
96
0
91
48
14
4
34
1.62
53721416--53721597
41
4.5
41
93
2
305
15
17
29
37
1.90
53722016--53722096
23
3.5
23
71
22
71
23
2
24
49
1.62
53722107--53722147
22
1.9
21
85
14
57
19
0
24
56
1.42
53724781--53724900
47
2.6
47
97
0
231
28
5
19
46
1.72
53724794--53724866
22
3.2
22
63
30
53
28
5
17
47
1.70
53725010--53725034
12
2.1
12
100
0
50
20
16
16
48
1.82
53726200--53726255
28
2.0
28
93
6
96
32
25
3
39
1.73
53726384--53726440
9
6.7
9
76
9
57
42
12
1
43
1.52
53726407--53726438
16
2.0
16
93
0
55
46
12
0
40
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53726533--53726602
12
6.0
12
78
6
72
47
18
2
31
1.63
53726656--53727409
9
83.1
9
78
6
770
47
17
3
30
1.65
53730025--53730055
16
1.9
16
93
0
53
16
12
9
61
1.56
53731902--53731984
41
2.0
41
100
0
166
51
21
12
14
1.74
53734215--53734242
5
5.6
5
100
0
56
82
0
0
17
0.68
53744540--53744581
18
2.3
18
91
0
66
64
0
2
33
1.07
53750029--53750428
210
1.9
210
86
2
570
30
20
15
33
1.94
53759916--53759956
2
20.5
2
89
0
64
51
0
2
46
1.14
53760390--53760467
3
26.3
3
84
5
88
62
2
1
33
1.17
53760466--53760515
3
16.7
3
91
8
84
34
0
0
66
0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204