genome.fa.s7.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 ID=Chr07-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  60982465

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  169  of  204  ( 24458 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50626234--50626572	157	2.2	157	98	0	660	47	10	6	35	1.64
50627290--50627347	27	2.2	27	90	6	93	37	6	0	55	1.27
50627413--50627506	27	3.5	27	83	0	116	22	26	35	15	1.94
50628535--50628579	18	2.5	18	85	0	63	28	4	46	20	1.69
50631574--50631615	19	2.2	20	86	4	59	69	4	0	26	1.08
50631574--50631625	20	2.7	20	84	3	61	65	7	0	26	1.20
50632333--50632486	10	15.7	10	63	24	53	0	31	0	67	0.96
50632306--50632472	38	4.5	37	78	15	143	0	32	0	66	0.96
50632373--50632483	18	6.1	18	74	15	95	0	32	0	66	0.98
50632410--50632483	14	5.1	14	72	22	55	0	31	0	68	0.89
50632305--50632468	72	2.3	72	81	10	185	0	32	0	67	0.96
50632404--50632483	34	2.8	28	75	24	85	0	32	0	67	0.91
50632362--50632474	38	3.0	38	89	2	156	0	34	0	64	1.00
50632444--50632486	22	1.9	23	85	4	61	0	30	0	69	0.88
50632406--50632487	28	2.7	30	75	19	89	0	32	0	67	0.91
50632338--50632488	18	8.4	17	72	17	78	0	32	0	66	0.96
50632305--50632500	38	5.0	40	78	12	121	0	34	0	65	0.97
50632638--50632701	28	2.4	26	82	10	76	46	1	10	40	1.48
50639674--50639708	3	11.7	3	93	0	61	0	0	71	28	0.86
50639841--50639922	12	6.8	12	87	0	119	26	2	30	40	1.69
50640541--50640605	30	2.2	30	86	5	87	21	12	44	21	1.85
50644386--50644418	17	1.9	17	100	0	66	21	0	0	78	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50653708--50653741	16	2.1	16	100	0	68	58	5	17	17	1.57
50659629--50659733	49	2.2	49	98	1	203	26	20	24	27	1.99
50661004--50661039	18	2.0	18	100	0	72	22	22	33	22	1.97
50672178--50672214	14	2.5	15	91	8	58	37	2	0	59	1.12
50672491--50672555	27	2.4	27	94	0	112	21	26	38	13	1.91
50672583--50672630	25	1.9	25	91	0	78	56	4	35	4	1.38
50672980--50673005	13	2.0	13	100	0	52	23	0	7	69	1.14
50672860--50673067	76	2.6	80	76	12	223	34	4	10	50	1.57
50675737--50675780	21	2.1	21	86	0	61	47	4	6	40	1.50
50675835--50675895	29	2.2	27	82	5	68	57	1	9	31	1.41
50678468--50679338	313	2.8	308	89	6	1327	29	10	7	52	1.62
50678470--50679338	156	5.6	156	90	3	1323	29	10	7	52	1.62
50679656--50679713	5	11.4	5	80	10	64	0	34	0	65	0.93
50679658--50679715	15	3.8	15	82	8	73	0	32	0	67	0.91
50679752--50679815	27	2.4	27	86	0	83	9	35	32	21	1.86
50682064--50682095	3	10.7	3	100	0	64	31	0	34	34	1.58
50692317--50692381	33	2.0	33	96	0	121	33	26	9	30	1.88
50695090--50695192	10	11.4	9	66	14	52	66	0	4	27	1.17
50695105--50695164	19	3.1	19	77	13	61	68	0	8	23	1.16
50699309--50699359	21	2.4	22	70	12	52	54	0	1	43	1.11
50705514--50705573	31	1.9	31	83	6	77	38	5	8	48	1.55
50714188--50714348	81	2.0	81	91	2	261	27	22	17	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50716563--50716605	20	2.2	20	86	0	59	39	2	18	39	1.64
50728865--50728911	3	15.7	3	100	0	94	31	0	0	68	0.90
50736324--50736365	2	21.0	2	100	0	84	50	0	0	50	1.00
50739658--50739688	2	15.5	2	100	0	62	51	48	0	0	1.00
50744696--50744742	20	2.2	22	81	7	62	70	4	8	17	1.29
50744697--50744745	23	2.2	22	81	3	53	73	4	8	14	1.21
50747215--50747265	26	1.9	27	92	4	86	49	3	0	47	1.20
50747552--50747617	13	5.1	13	84	0	96	36	27	6	30	1.81
50750017--50751038	508	2.0	508	97	0	1909	40	18	12	28	1.87
50751443--50751488	17	2.7	17	82	0	56	39	0	0	60	0.97
50751465--50751577	38	3.0	37	86	12	167	36	2	0	60	1.17
50751510--50751574	11	6.4	11	75	20	52	38	1	1	58	1.17
50751455--50751575	39	3.1	38	86	11	174	35	2	0	61	1.15
50751558--50751596	20	2.0	20	89	0	60	43	0	0	56	0.99
50751704--50751780	22	3.4	22	76	16	84	38	18	23	19	1.93
50751712--50751791	25	3.3	25	75	16	96	38	18	23	18	1.93
50751702--50751791	47	1.9	47	97	0	171	38	17	23	20	1.93
50752744--50752791	5	9.6	5	86	0	60	50	6	0	43	1.27
50752744--50752791	15	3.2	15	87	0	69	50	6	0	43	1.27
50781216--50781243	3	9.3	3	100	0	56	67	0	32	0	0.91
50786922--50786967	24	1.9	24	90	0	74	41	13	10	34	1.79
50788426--50788475	6	7.9	7	84	10	56	16	24	2	58	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50791567--50791685	58	2.1	58	100	0	238	29	15	18	36	1.92
50792086--50792184	50	2.0	50	84	7	130	36	12	18	33	1.88
50798507--50798566	21	2.9	21	87	0	93	46	18	20	15	1.84
50806467--50806598	60	2.2	59	84	7	171	43	3	3	50	1.33
50815556--50815592	14	2.5	15	83	16	51	64	10	0	24	1.25
50833928--50833961	12	2.9	12	86	4	52	32	0	0	67	0.91
50837163--50837208	20	2.3	20	88	7	67	54	8	0	36	1.32
50839066--50839174	55	2.0	55	94	0	191	19	28	17	34	1.94
50839859--50839915	17	3.4	17	67	13	55	8	21	7	63	1.47
50839859--50839925	33	2.0	33	97	0	125	8	20	7	62	1.49
50840901--50840964	21	3.0	22	72	9	69	37	25	18	18	1.94
50841885--50841923	20	2.0	20	90	10	62	10	12	5	71	1.28
50842227--50842264	14	2.4	17	87	12	55	52	0	0	47	1.00
50842244--50842282	12	3.4	11	80	13	51	46	2	0	51	1.14
50842268--50842301	17	2.0	17	88	0	50	50	2	0	47	1.16
50849321--50849345	4	6.2	4	100	0	50	24	24	0	52	1.48
50858415--50858462	25	1.9	25	87	8	71	43	2	2	52	1.24
50859750--50859795	2	23.5	2	91	4	76	50	0	0	50	1.00
50859800--50859846	24	2.0	24	84	16	62	51	14	0	34	1.43
50860623--50860661	20	2.0	20	95	5	71	43	5	0	51	1.24
50860626--50860676	21	2.5	20	84	6	59	39	7	1	50	1.42
50861622--50861670	14	3.7	14	68	15	50	32	2	0	65	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50861616--50861660	22	2.0	23	83	12	58	33	2	0	64	1.06
50861630--50861692	22	2.7	23	83	11	67	33	1	1	63	1.13
50869499--50869564	8	8.6	7	75	21	53	43	3	1	51	1.26
50869509--50869577	32	2.2	32	79	7	79	47	2	2	46	1.32
50869580--50869648	11	6.2	11	73	8	50	73	2	21	1	1.04
50869597--50869655	29	2.0	29	83	6	75	69	3	25	1	1.13
50874171--50874555	158	2.4	158	90	3	580	55	9	9	24	1.62
50874828--50874894	27	2.5	27	87	0	98	7	32	34	25	1.84
50877574--50877663	43	2.1	43	97	0	171	47	17	6	27	1.73
50881072--50881245	73	2.4	75	79	10	207	40	1	33	24	1.65
50881189--50881243	19	2.9	19	91	5	85	41	0	29	29	1.56
50881212--50881250	19	2.0	19	85	5	51	41	0	33	25	1.56
50881370--50881413	23	2.0	22	81	4	52	29	11	18	40	1.85
50882963--50882991	2	14.5	2	100	0	58	51	0	0	48	1.00
50884923--50885015	20	4.7	19	78	7	78	33	9	20	36	1.85
50884922--50885013	40	2.3	41	78	12	109	33	9	21	34	1.87
50886231--50886272	21	2.0	21	90	4	68	4	21	2	71	1.16
50886957--50887012	29	1.9	29	85	0	76	17	23	37	21	1.94
50888731--50888755	11	2.3	11	100	0	50	40	0	0	60	0.97
50891641--50891684	21	2.1	21	83	8	54	54	0	6	38	1.27
50893010--50894201	89	13.5	88	84	3	1211	28	23	17	30	1.97
50893009--50894199	44	27.0	43	71	8	644	28	23	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50900774--50900817	21	2.1	21	87	8	63	52	0	6	40	1.28
50902069--50902104	17	2.1	17	89	5	54	19	2	11	66	1.35
50902195--50902290	47	2.0	47	97	0	183	42	4	5	47	1.45
50905373--50905459	42	2.1	42	100	0	174	44	16	12	26	1.83
50906197--50906239	21	2.0	21	86	8	61	34	0	6	58	1.25
50906222--50906303	38	2.2	38	84	4	105	43	0	6	50	1.27
50907760--50907802	19	2.1	21	83	8	63	44	2	0	53	1.13
50907763--50907802	20	2.0	20	90	4	64	45	2	0	52	1.14
50913232--50913363	19	6.8	19	89	3	201	38	9	14	37	1.79
50913232--50913370	59	2.4	57	87	6	201	38	9	14	37	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204