Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 ID=Chr07-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  60982465

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  178  of  204  ( 24458 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52676658--52676719
28
2.2
27
83
13
81
37
3
4
54
1.38
52681317--52681341
12
2.1
12
100
0
50
8
0
60
32
1.26
52681792--52681889
43
2.3
43
81
0
106
21
17
32
28
1.96
52683220--52683262
18
2.3
19
80
15
54
67
2
0
30
1.03
52693843--52693885
21
2.0
21
95
0
77
9
20
25
44
1.81
52696883--52696932
21
2.4
21
86
6
66
40
0
18
42
1.50
52697496--52697556
25
2.5
24
78
5
68
16
26
22
34
1.95
52705082--52705147
16
3.7
18
70
12
55
33
0
9
57
1.30
52705082--52705154
18
4.1
17
71
15
58
36
0
8
54
1.30
52705124--52705166
19
2.3
18
80
4
50
32
0
6
60
1.23
52708573--52708623
25
2.0
25
96
0
93
70
7
9
11
1.33
52712378--52712464
42
2.1
42
86
0
120
49
17
4
28
1.66
52712486--52712525
19
2.2
18
95
4
71
42
15
2
40
1.60
52732873--52732961
40
2.2
41
91
4
144
37
3
0
59
1.14
52740431--52740488
17
3.6
16
80
17
66
43
1
0
55
1.10
52740485--52740534
11
4.5
11
82
7
66
34
2
0
64
1.05
52740478--52740534
23
2.6
23
86
8
75
36
1
0
61
1.07
52741022--52741074
26
2.0
26
92
0
88
41
0
0
58
0.98
52742069--52742108
2
20.0
2
100
0
80
50
0
0
50
1.00
52745067--52745100
2
17.0
2
100
0
68
50
0
0
50
1.00
52748885--52748943
18
3.1
18
73
17
57
54
1
0
44
1.10
52750705--52750753
23
2.1
24
85
14
68
16
8
24
51
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52758476--52758523
26
1.9
25
84
16
64
45
0
2
52
1.12
52758602--52758824
66
3.6
63
69
21
195
42
2
5
49
1.41
52758564--52758853
120
2.4
120
93
3
478
42
2
4
50
1.36
52758689--52758740
15
3.6
15
80
12
56
44
0
1
53
1.11
52758626--52758824
61
3.3
61
68
17
189
42
2
6
49
1.40
52758793--52759103
151
2.0
154
93
3
529
46
4
3
45
1.40
52758956--52758990
18
2.0
17
88
5
52
45
0
0
54
0.99
52758794--52759026
75
3.1
75
64
15
190
45
3
3
47
1.36
52759222--52759267
16
2.9
16
90
0
74
26
32
0
41
1.56
52759224--52759277
16
3.4
16
86
0
72
31
31
0
37
1.58
52760012--52760076
27
2.4
27
97
0
121
41
9
0
49
1.35
52760102--52760164
27
2.3
27
91
0
108
17
30
28
23
1.97
52761752--52761810
27
2.2
27
90
0
91
28
30
25
15
1.96
52763285--52763319
18
1.9
18
88
11
54
17
14
37
31
1.89
52764087--52764117
15
2.1
15
93
0
53
45
6
16
32
1.72
52779128--52779182
22
2.4
22
80
14
58
30
1
10
56
1.44
52782054--52782135
41
2.0
41
86
9
114
25
18
10
45
1.82
52783720--52783756
13
2.9
13
96
4
67
54
0
8
37
1.30
52784379--52784834
27
16.6
27
83
5
475
47
12
2
36
1.57
52784379--52784813
117
3.8
117
88
8
644
48
12
2
36
1.56
52784379--52784879
18
27.9
18
73
9
344
47
13
3
35
1.60
52792230--52792298
21
3.3
21
83
0
84
40
20
36
2
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52792284--52792322
12
3.2
12
92
0
69
41
15
41
2
1.61
52792741--52792988
42
5.9
41
80
12
247
25
20
23
30
1.99
52801347--52801393
18
2.7
18
80
9
53
23
0
4
72
1.02
52801744--52801791
16
2.9
16
75
6
51
81
6
4
8
0.98
52807137--52807196
2
30.0
2
89
0
93
46
1
3
48
1.28
52848936--52849104
87
2.0
86
89
3
259
27
13
17
42
1.86
52859718--52859788
31
2.3
31
85
0
97
26
14
19
39
1.90
52859471--52859827
184
1.9
185
86
2
504
29
9
19
41
1.83
52860662--52860703
15
2.9
15
86
6
52
73
2
11
11
1.18
52862418--52862450
2
16.5
2
100
0
66
51
0
0
48
1.00
52867523--52867955
124
3.7
110
81
12
429
33
20
15
31
1.93
52867658--52867955
121
2.4
121
97
2
553
33
20
14
31
1.93
52867847--52867877
11
2.9
11
95
4
55
41
0
0
58
0.98
52868360--52868439
40
2.1
38
83
9
99
58
2
6
32
1.36
52868360--52868438
42
2.0
38
83
14
97
58
2
6
32
1.37
52868687--52868766
3
26.3
3
83
7
99
66
2
1
30
1.13
52870950--52871045
48
2.0
48
89
0
147
44
19
14
20
1.86
52876084--52876179
48
2.0
48
93
0
165
42
20
15
20
1.89
52879983--52880235
17
14.3
18
72
11
184
47
8
13
31
1.73
52879984--52880222
35
6.8
34
74
11
160
47
8
13
30
1.73
52880340--52880400
21
3.3
18
74
17
54
36
11
18
34
1.86
52880341--52880383
21
2.1
21
91
4
70
37
9
16
37
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52880547--52880584
17
2.3
16
90
4
58
60
0
5
34
1.19
52880734--52880851
16
7.4
16
77
15
102
0
17
0
81
0.74
52880744--52880851
48
2.2
48
83
6
130
0
17
0
81
0.74
52880967--52881012
19
2.6
17
82
6
56
2
8
13
76
1.11
52881042--52881077
18
2.0
18
88
0
54
8
19
47
25
1.77
52881144--52881195
3
15.7
3
84
15
59
1
32
0
65
1.04
52881144--52881195
10
5.5
10
80
15
58
1
32
0
65
1.04
52881144--52881195
13
3.9
13
85
14
63
1
32
0
65
1.04
52881546--52881622
29
2.7
28
92
6
127
42
6
20
29
1.77
52883988--52884024
2
19.0
2
94
5
67
48
0
0
51
1.00
52884054--52884135
40
2.0
40
88
0
119
63
9
9
17
1.51
52888485--52888549
27
2.4
27
78
19
73
33
1
3
61
1.21
52891353--52891456
45
2.3
45
79
11
115
33
4
3
57
1.38
52891402--52891453
18
2.8
19
75
21
56
30
1
3
63
1.23
52893188--52893334
69
2.2
64
87
10
199
29
12
13
44
1.81
52894203--52894257
28
1.9
29
85
3
76
41
41
0
16
1.48
52894226--52894400
89
2.0
89
88
0
260
45
29
1
24
1.61
52894238--52894425
89
2.1
89
84
1
250
45
26
1
26
1.63
52895003--52895200
41
4.8
40
84
4
236
28
23
22
25
1.99
52895003--52895200
82
2.4
83
84
2
265
28
23
22
25
1.99
52895260--52895364
40
2.7
40
79
7
108
19
24
21
34
1.96
52896618--52896665
18
2.6
18
78
21
55
31
4
2
62
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52897449--52897659
106
2.0
105
84
5
273
31
16
16
35
1.92
52903299--52903351
21
2.5
21
90
0
79
24
9
35
30
1.87
52907473--52907582
37
2.8
39
80
9
134
24
18
21
35
1.95
52911858--52911890
7
4.6
7
96
3
57
42
0
0
57
0.98
52912308--52912347
20
2.0
21
95
5
73
40
0
7
52
1.30
52922284--52922630
62
5.6
62
77
15
344
60
1
8
29
1.36
52922362--52922485
52
2.4
50
86
9
169
62
0
6
30
1.26
52922300--52922536
114
2.1
114
88
4
345
59
1
8
29
1.36
52922408--52922605
69
3.0
68
81
11
245
61
1
8
28
1.35
52923679--52923726
16
3.2
15
82
8
53
37
2
0
60
1.09
52926523--52926704
65
2.7
69
82
4
219
62
3
7
27
1.37
52926523--52926909
69
6.0
66
72
17
237
61
2
8
27
1.37
52926640--52926768
53
2.4
52
84
8
172
64
0
6
28
1.23
52926729--52926771
22
2.0
21
82
13
52
69
0
9
20
1.15
52926640--52926768
52
2.4
53
84
8
174
64
0
6
28
1.23
52926736--52926781
21
2.0
23
84
12
60
69
0
6
23
1.11
52926516--52926887
183
2.0
187
84
5
497
61
2
8
28
1.37
52928279--52928362
44
1.9
44
87
0
123
26
20
21
32
1.98
52928311--52928557
96
2.6
96
84
0
298
31
19
14
34
1.92
52928284--52928598
45
6.7
47
71
9
191
30
19
15
33
1.93
52936782--52936825
21
2.1
21
100
0
88
47
9
9
34
1.67
52937313--52937516
41
5.0
41
92
1
329
24
28
20
26
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52940340--52940364
13
1.9
13
100
0
50
8
0
24
68
1.16
52941884--52942100
41
5.3
41
93
0
371
28
19
28
23
1.98
52943036--52943073
20
1.9
20
88
0
58
21
28
13
36
1.91
52943036--52943085
20
2.5
20
83
0
55
22
30
10
38
1.86
52948475--52948529
25
2.3
25
84
12
71
49
0
0
50
1.00
52948455--52948537
37
2.4
34
82
8
87
48
0
1
50
1.08
52949030--52949076
22
2.1
23
92
4
78
27
12
8
51
1.69
52951133--52951231
44
2.2
44
82
3
110
28
25
17
29
1.97
52951174--52951264
42
2.1
44
82
8
107
29
21
15
32
1.94
52951240--52951331
43
2.1
43
81
2
103
31
18
20
29
1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204