genome.fa.s7.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 ID=Chr07-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  60982465

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  112  of  204  ( 24458 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34155355--34155866	174	2.9	174	92	4	832	47	10	2	39	1.51
34155694--34155743	22	2.3	22	89	3	75	48	14	0	38	1.44
34155906--34155950	22	2.0	22	95	0	81	46	11	0	42	1.39
34155647--34155818	56	3.0	56	84	6	184	48	11	2	38	1.51
34155821--34156016	56	3.4	57	75	14	211	47	11	3	38	1.55
34161436--34161607	66	2.6	65	86	4	229	40	19	27	12	1.88
34161577--34161668	21	4.4	21	80	5	78	38	16	40	5	1.71
34162000--34162161	43	3.8	43	82	6	204	25	19	30	24	1.98
34162000--34162161	85	1.9	85	83	5	211	25	19	30	24	1.98
34162000--34162209	85	2.5	85	77	7	210	24	20	29	25	1.99
34162000--34162184	43	4.4	41	79	7	183	26	21	29	23	1.99
34164969--34164994	5	5.2	5	100	0	52	80	0	0	19	0.71
34180006--34180078	36	2.0	36	100	0	146	27	23	19	30	1.98
34183623--34183759	50	2.7	50	80	4	150	23	29	22	24	1.99
34190916--34190954	20	2.0	20	90	10	62	15	23	5	56	1.59
34191245--34191348	50	2.1	50	83	0	127	20	31	22	25	1.98
34201174--34201367	50	3.9	50	78	2	185	27	20	28	23	1.99
34208316--34208475	45	3.6	44	80	9	164	25	13	25	36	1.92
34208944--34209123	88	2.0	88	93	0	306	37	9	11	41	1.74
34220100--34220297	50	3.8	50	85	4	243	25	22	30	21	1.99
34220111--34220297	100	1.8	103	86	6	272	25	22	31	21	1.98
34222850--34223091	50	4.7	50	77	6	193	27	20	28	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34230634--34230667	16	2.1	16	88	0	50	38	2	29	29	1.72
34237568--34237628	25	2.4	25	80	0	68	26	24	19	29	1.99
34247384--34247449	33	2.0	33	96	0	123	27	22	9	40	1.84
34247397--34247476	33	2.4	33	83	6	90	31	22	7	38	1.82
34248570--34248613	23	1.9	22	82	17	54	36	25	0	38	1.56
34248666--34248751	45	1.9	45	95	0	154	33	25	15	25	1.95
34257073--34257247	45	3.9	45	80	7	187	32	23	16	28	1.96
34257073--34257248	90	2.0	88	84	2	226	31	23	16	28	1.96
34260633--34260672	17	2.4	17	87	8	55	52	5	0	42	1.23
34260643--34260676	17	2.0	17	100	0	68	52	5	0	41	1.25
34262722--34262751	15	2.0	15	100	0	60	53	20	6	20	1.67
34269188--34269212	12	2.1	12	100	0	50	60	0	24	16	1.36
34269596--34269661	23	2.9	23	88	0	96	15	27	25	31	1.95
34278613--34278671	28	2.1	28	87	6	84	5	3	11	79	1.01
34278625--34278703	22	3.6	21	77	16	72	3	7	6	82	0.95
34278673--34278698	6	4.3	6	100	0	52	0	15	0	84	0.62
34279649--34279708	21	3.0	20	83	11	79	80	6	3	10	1.01
34284096--34284140	22	2.0	22	100	0	90	40	17	8	33	1.81
34285988--34286026	19	2.1	19	90	9	62	41	0	7	51	1.31
34288887--34288993	30	3.6	28	78	15	83	57	5	2	33	1.36
34289246--34289317	3	24.0	3	91	0	117	63	1	2	31	1.17
34289651--34289687	19	1.9	19	94	0	65	35	13	10	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34289654--34289695	19	2.3	19	84	8	52	38	9	14	38	1.78
34290465--34290674	44	4.8	44	84	3	280	28	25	18	28	1.98
34290674--34291079	88	4.6	88	93	0	659	18	24	29	27	1.98
34290421--34290746	132	2.5	132	73	6	309	25	25	21	28	1.99
34290712--34291026	44	7.2	44	59	8	120	19	25	27	26	1.99
34290932--34291070	44	3.2	44	67	8	129	17	21	32	28	1.96
34291062--34291347	44	6.5	43	75	9	188	30	25	16	28	1.96
34291062--34291346	88	3.2	88	78	6	258	30	24	16	28	1.96
34290685--34291173	264	1.9	263	82	5	567	21	24	25	28	1.99
34296512--34296654	28	5.0	29	75	14	109	57	4	2	35	1.33
34296724--34296797	17	4.5	17	73	11	64	48	1	13	36	1.51
34296711--34296833	60	2.0	62	84	3	160	52	1	11	34	1.47
34296819--34296855	2	19.0	2	94	5	67	51	0	0	48	1.00
34296940--34296975	3	12.0	3	87	0	54	63	2	2	30	1.22
34297283--34297334	20	2.6	20	96	0	95	44	17	5	32	1.72
34297974--34298038	3	21.7	3	100	0	130	33	0	0	66	0.92
34298795--34298852	23	2.5	23	100	0	116	20	25	15	37	1.92
34305233--34305287	21	2.6	21	88	8	85	30	38	7	23	1.82
34306122--34306169	25	1.9	25	84	16	64	45	2	2	50	1.25
34307978--34308008	15	2.1	15	100	0	62	45	6	0	48	1.28
34323357--34323543	67	2.8	66	90	3	293	27	14	8	49	1.71
34337490--34337968	242	2.0	242	92	0	805	35	10	19	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34341907--34342052	67	2.2	67	87	0	202	23	26	13	36	1.92
34342799--34342827	14	2.1	14	100	0	58	58	27	6	6	1.50
34345505--34345545	22	1.9	22	90	5	66	26	7	14	51	1.69
34353295--34353341	23	2.0	23	84	8	60	38	2	0	59	1.09
34353434--34353509	36	2.1	36	80	11	84	38	9	1	51	1.42
34353610--34353653	23	2.0	22	90	4	70	34	6	2	56	1.38
34356458--34356641	51	3.6	51	76	5	167	24	19	27	29	1.98
34359318--34359422	47	2.2	47	84	3	122	28	16	24	30	1.96
34370208--34370422	29	7.4	29	76	9	152	23	25	12	38	1.90
34370208--34370422	58	3.7	58	73	7	168	23	25	12	38	1.90
34370266--34370451	87	2.1	87	82	2	221	24	24	12	38	1.90
34376531--34376656	48	2.6	48	84	0	144	24	20	32	22	1.98
34381129--34381163	16	2.2	16	89	0	52	20	20	20	40	1.92
34383008--34383037	15	2.0	15	93	0	51	80	3	3	13	0.97
34385269--34385653	89	4.3	89	84	0	421	27	23	23	25	2.00
34385317--34385462	44	3.3	43	67	10	114	23	27	23	24	2.00
34385764--34386226	44	10.7	43	74	8	294	31	19	20	28	1.97
34385755--34386271	174	3.0	173	83	4	605	30	19	20	28	1.97
34385807--34386268	85	5.4	84	71	10	297	30	19	20	29	1.97
34385934--34386173	129	1.9	129	84	3	322	30	19	18	30	1.96
34387596--34387710	23	4.9	24	76	12	96	32	7	4	55	1.48
34387549--34387744	47	4.2	46	73	11	123	34	6	4	55	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34387622--34387743	46	2.7	46	76	13	117	35	7	2	54	1.41
34387550--34387834	24	12.3	23	69	13	140	34	6	4	54	1.48
34390079--34390148	26	2.7	26	75	0	68	32	20	22	24	1.97
34392418--34392508	45	2.0	45	100	0	182	17	24	29	28	1.97
34394262--34394292	7	4.4	7	91	0	53	41	12	3	41	1.59
34405968--34405998	16	1.9	16	93	0	53	54	9	0	35	1.33
34409756--34409904	43	3.5	42	82	3	172	40	23	12	24	1.88
34417515--34417563	20	2.5	20	81	15	66	12	24	6	57	1.58
34417769--34417954	50	3.7	50	81	9	193	21	26	22	29	1.99
34421829--34421859	14	2.2	14	100	0	62	45	25	0	29	1.54
34430081--34430138	27	2.1	27	93	0	98	22	22	25	29	1.99
34431294--34431323	16	1.9	16	93	6	53	30	0	20	50	1.49
34433664--34433778	62	1.9	59	83	5	149	41	3	3	51	1.36
34434424--34434450	14	1.9	14	100	0	54	29	0	25	44	1.54
34436113--34436177	24	2.7	24	87	0	94	24	41	20	13	1.88
34439246--34439290	22	2.0	22	95	0	81	40	22	13	24	1.90
34451255--34451322	21	3.2	21	75	8	66	42	35	11	10	1.76
34457595--34457627	17	1.9	17	93	0	57	15	12	15	57	1.65
34466197--34466224	14	2.0	14	100	0	56	21	0	7	71	1.09
34470813--34470880	29	2.3	29	80	5	75	39	2	0	57	1.14
34470828--34470893	29	2.3	29	81	0	69	37	1	3	57	1.23
34471296--34471347	26	2.0	26	100	0	104	23	19	19	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34473292--34473419	29	4.3	29	78	8	96	41	7	12	38	1.72
34473309--34473419	29	3.8	29	78	7	116	41	8	12	37	1.73
34477068--34477102	18	1.9	18	88	0	52	62	8	2	25	1.38
34481029--34481117	31	2.9	31	73	11	85	38	7	5	48	1.56
34481032--34481114	29	2.9	28	74	15	71	38	8	4	48	1.55
34483007--34483039	15	2.2	15	89	10	50	12	18	24	45	1.83
34493403--34493460	24	2.4	24	85	0	71	34	10	24	31	1.89
34493729--34494318	44	13.8	43	69	8	346	31	23	19	25	1.98
34493728--34494350	85	7.3	84	71	12	322	31	23	19	25	1.98
34493728--34494321	129	4.6	129	91	1	935	31	23	19	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204