Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 ID=Chr07-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  60982465

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  165  of  204  ( 24458 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49339661--49339724
24
2.7
24
90
0
83
34
3
42
20
1.68
49341858--49341903
19
2.4
18
82
10
56
13
6
2
78
1.04
49343125--49343396
131
2.1
131
94
0
472
38
14
13
33
1.86
49351092--49351145
26
2.1
26
82
6
65
53
1
11
33
1.47
49353287--49353313
14
1.9
14
100
0
54
70
0
0
29
0.88
49353443--49353520
38
2.1
38
95
0
138
43
7
21
26
1.80
49355717--49355830
31
3.8
30
78
13
108
28
22
4
43
1.72
49357121--49357170
26
1.9
26
84
8
66
60
6
8
26
1.48
49368564--49368641
11
7.4
11
77
12
74
35
1
1
61
1.12
49368544--49368656
40
2.8
40
87
5
156
35
0
0
62
1.07
49368556--49368663
21
5.2
20
68
19
62
36
0
0
62
1.08
49382101--49382145
19
2.4
19
86
13
67
66
13
2
17
1.34
49383044--49383087
2
22.0
2
100
0
88
50
0
0
50
1.00
49394224--49394297
9
8.2
9
70
5
51
18
28
47
5
1.71
49394224--49394303
27
3.0
27
88
0
106
18
28
46
6
1.73
49394284--49394435
39
3.9
39
93
1
234
13
34
43
7
1.74
49395987--49396022
2
18.0
2
100
0
72
50
0
0
50
1.00
49397340--49397382
21
2.1
20
83
12
52
37
4
6
51
1.50
49397374--49397407
16
2.1
16
100
0
68
17
0
11
70
1.16
49397532--49397576
18
2.5
18
100
0
90
57
6
4
31
1.44
49397640--49397681
16
2.6
16
92
0
66
42
7
2
47
1.43
49402646--49402703
28
2.1
28
100
0
116
29
20
15
34
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49403908--49403940
2
17.5
2
87
12
52
51
0
0
48
1.00
49404083--49404144
26
2.3
27
83
2
81
20
29
30
19
1.97
49406462--49406538
14
5.0
15
70
20
52
41
15
7
35
1.76
49411351--49411405
4
13.8
4
88
0
83
47
21
1
29
1.61
49424378--49424432
20
2.6
21
77
13
51
3
14
7
74
1.17
49424378--49424432
21
2.6
21
82
5
58
3
14
7
74
1.17
49427414--49427476
26
2.5
25
75
12
65
52
1
1
44
1.20
49441318--49441347
6
5.0
6
100
0
60
33
0
0
66
0.92
49441849--49441879
2
16.0
2
93
6
55
48
0
0
51
1.00
49443375--49443408
7
4.9
7
100
0
68
58
11
14
14
1.63
49443833--49443857
12
2.1
12
100
0
50
32
8
52
8
1.60
49459235--49459287
27
2.0
26
81
3
61
0
26
3
69
1.05
49459337--49459367
14
2.2
14
94
0
53
64
3
0
32
1.09
49459486--49459541
16
3.8
16
79
15
59
50
0
0
50
1.00
49459485--49459531
17
2.7
16
84
15
58
51
0
0
48
1.00
49464241--49464274
17
2.0
17
88
0
50
23
2
0
73
0.97
49495893--49495980
30
2.9
30
80
11
81
29
14
10
45
1.78
49496234--49496300
34
1.9
35
90
3
109
32
7
11
47
1.68
49498797--49498824
12
2.3
12
100
0
56
46
17
7
28
1.75
49506019--49506058
16
2.5
16
87
0
53
42
2
30
25
1.68
49506042--49506130
44
2.0
46
93
4
155
26
4
30
38
1.76
49506289--49506422
18
7.9
18
68
17
81
56
2
1
39
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49506323--49506505
59
3.0
60
70
12
203
51
4
2
41
1.35
49506479--49506530
12
4.2
12
76
9
50
51
1
0
46
1.12
49506481--49506533
26
2.0
26
85
7
72
50
1
0
47
1.12
49511988--49512021
11
3.1
11
86
0
50
0
55
0
44
0.99
49514749--49514797
20
2.5
20
86
0
71
51
0
4
44
1.20
49514808--49514894
33
2.7
32
77
13
97
45
18
9
26
1.79
49514885--49514925
20
2.0
21
90
4
66
48
12
7
31
1.68
49517723--49517774
27
1.9
27
88
7
79
11
17
26
44
1.83
49527131--49527894
207
3.7
207
80
3
782
35
24
20
19
1.96
49527210--49527848
277
2.3
276
79
2
640
35
24
20
19
1.95
49527260--49527947
138
5.0
138
77
2
594
35
24
20
19
1.96
49527160--49527949
69
11.4
68
76
3
432
35
24
20
19
1.96
49542487--49542535
20
2.5
20
86
3
64
40
2
2
55
1.23
49558290--49558329
18
2.2
18
86
8
55
62
5
0
32
1.17
49559589--49559614
11
2.4
11
100
0
52
57
0
26
15
1.38
49562132--49562253
41
3.0
41
80
4
122
28
19
23
27
1.98
49563250--49563293
6
7.2
6
84
5
61
45
15
20
18
1.85
49563273--49563377
45
2.3
45
87
6
158
41
16
19
22
1.89
49563567--49563674
40
2.7
40
85
2
128
38
19
8
33
1.82
49563777--49563826
25
2.0
25
84
11
66
36
22
0
42
1.54
49564792--49564823
8
4.0
8
91
0
55
59
0
0
40
0.97
49564788--49564825
16
2.3
17
90
9
69
57
0
0
42
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49565184--49565276
32
3.0
31
73
14
109
27
10
16
45
1.80
49565166--49565293
63
2.0
63
87
0
184
29
8
14
46
1.75
49569572--49569621
23
2.2
21
82
10
64
64
2
4
30
1.23
49573396--49573462
27
2.5
28
79
16
70
37
11
16
34
1.85
49574715--49574922
91
2.3
91
92
0
335
46
2
4
46
1.37
49574837--49574897
28
2.2
28
85
5
81
45
0
3
50
1.17
49574755--49574897
44
3.2
43
69
20
121
46
2
3
48
1.31
49575359--49575468
45
2.6
44
80
8
122
31
28
5
34
1.80
49575445--49575490
16
2.9
16
90
6
67
23
32
2
41
1.67
49576940--49577034
40
2.4
40
94
1
165
44
30
14
10
1.79
49577635--49577677
22
2.0
21
81
9
50
30
18
9
41
1.82
49579562--49579621
3
20.0
3
100
0
120
33
0
0
66
0.92
49579631--49579655
10
2.5
10
100
0
50
24
0
0
76
0.80
49579778--49579811
13
2.6
13
90
0
50
32
2
2
61
1.26
49579898--49579954
13
4.4
13
71
8
53
38
1
1
57
1.19
49580238--49580503
109
2.4
109
93
0
444
30
17
20
32
1.95
49588342--49588402
30
2.0
31
84
9
81
31
3
0
65
1.09
49589943--49589982
18
2.2
18
86
0
53
25
20
10
45
1.81
49590359--49590478
61
2.0
61
96
0
222
32
2
8
56
1.42
49591211--49591290
19
4.0
19
70
22
56
62
5
2
30
1.29
49591213--49591290
3
25.3
3
71
14
52
62
3
2
30
1.26
49592627--49592661
18
2.1
18
89
10
56
5
5
31
57
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49595533--49595569
2
18.5
2
100
0
74
51
0
0
48
1.00
49598541--49598921
36
10.0
36
83
10
429
37
12
20
28
1.90
49598704--49598947
118
2.1
117
93
0
416
36
13
20
28
1.91
49598546--49598921
154
2.5
144
88
8
509
38
12
20
28
1.89
49598541--49598921
190
2.0
190
96
0
699
37
12
20
28
1.90
49599726--49599815
41
2.2
41
100
0
180
48
7
15
27
1.72
49600828--49600887
19
3.1
19
70
15
50
45
16
0
38
1.48
49602773--49602805
7
4.7
7
92
0
57
57
39
0
3
1.14
49607076--49607111
15
2.5
14
86
8
54
44
8
0
47
1.33
49608650--49608711
31
2.0
31
96
0
115
35
17
9
37
1.83
49612844--49612873
14
2.1
14
100
0
60
23
26
6
43
1.78
49613235--49613261
14
1.9
14
100
0
54
7
25
0
66
1.17
49616521--49616581
22
2.8
20
76
13
59
37
0
4
57
1.20
49616526--49617129
120
5.0
120
95
2
1052
42
1
3
52
1.28
49617280--49617367
46
2.0
46
93
4
153
37
30
4
27
1.77
49617349--49617397
16
3.1
16
90
0
80
24
34
6
34
1.80
49618299--49618339
21
2.0
21
85
0
55
29
24
2
43
1.67
49618487--49618559
30
2.3
32
77
11
80
30
2
2
64
1.21
49620067--49620102
18
2.0
18
100
0
72
27
27
5
38
1.79
49620357--49620400
21
2.1
21
91
0
70
40
45
9
4
1.56
49620481--49620671
62
3.1
61
83
9
223
35
4
8
51
1.53
49623818--49624246
126
3.4
125
85
2
522
27
16
16
39
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49623818--49624246
125
3.4
125
85
2
565
27
16
16
39
1.90
49624367--49624436
33
2.1
34
91
2
115
41
12
0
45
1.42
49624402--49624457
29
2.0
28
85
3
76
39
23
0
37
1.55
49626092--49626142
17
2.8
18
76
11
59
58
0
0
41
0.98
49628652--49628693
22
1.9
22
85
9
59
57
0
0
42
0.99
49629065--49629432
184
2.0
186
94
2
652
55
4
7
33
1.46
49629327--49629395
32
2.1
32
81
13
77
60
4
4
30
1.35
49634207--49634241
2
17.5
2
100
0
70
0
48
0
51
1.00
49645664--49645696
2
16.5
2
100
0
66
51
0
0
48
1.00
49646797--49646872
11
7.0
11
71
11
50
61
1
0
36
1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204