genome.fa.s7.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 ID=Chr07-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  60982465

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  124  of  204  ( 24458 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38005932--38006287	52	6.9	51	73	12	189	29	6	4	59	1.42
38006086--38006249	50	3.2	49	73	14	152	29	4	5	59	1.41
38005927--38006288	26	14.1	25	67	21	105	29	6	4	59	1.41
38006179--38006301	52	2.3	54	78	9	146	26	6	5	60	1.44
38007644--38007738	25	3.6	27	81	7	115	29	7	2	61	1.35
38007644--38008007	52	7.1	51	73	11	173	29	6	4	59	1.42
38007795--38008008	50	4.3	48	76	10	155	29	5	4	59	1.40
38007635--38007993	26	14.1	25	69	18	117	28	6	4	60	1.41
38009331--38009366	11	3.2	11	96	4	63	16	36	0	47	1.47
38011620--38011874	25	10.8	24	68	16	158	38	0	13	48	1.43
38011610--38011883	140	2.0	139	95	0	494	37	0	13	49	1.42
38011598--38011899	139	2.2	137	90	4	496	38	0	12	49	1.42
38011938--38012430	23	22.2	23	74	13	279	45	27	0	25	1.59
38011938--38012220	90	3.2	90	81	10	370	46	26	0	26	1.55
38012064--38012420	67	5.3	66	81	11	332	45	27	0	26	1.59
38011938--38012292	172	2.1	163	83	8	439	46	27	0	25	1.57
38012252--38012397	21	6.9	21	86	8	206	42	31	0	25	1.60
38012260--38012397	43	3.2	42	89	6	206	42	33	0	23	1.60
38012252--38012420	64	2.6	63	83	10	207	43	29	1	25	1.62
38012427--38012668	115	2.1	116	89	4	373	38	12	7	42	1.70
38015679--38015920	124	1.9	126	88	1	371	33	22	14	29	1.94
38017464--38017490	3	9.0	3	100	0	54	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38017489--38017529	3	13.7	3	100	0	82	0	0	31	68	0.90
38031123--38031309	51	3.7	50	80	6	198	29	27	17	25	1.98
38037696--38037767	20	3.8	20	69	16	71	31	19	4	44	1.70
38037703--38037776	36	2.1	36	100	0	148	31	20	5	43	1.74
38037847--38037985	51	2.7	52	85	3	185	30	26	17	25	1.97
38046693--38046987	51	5.8	50	77	9	294	30	26	14	28	1.95
38046693--38046987	102	2.9	102	87	2	414	30	26	14	28	1.95
38054390--38054566	50	3.5	50	89	2	257	31	23	15	29	1.95
38054379--38054718	51	6.7	50	77	5	274	30	24	15	30	1.95
38054386--38054718	102	3.3	102	84	1	393	30	24	15	29	1.95
38055192--38055250	30	1.9	31	82	3	75	28	18	6	45	1.75
38056508--38056576	20	3.3	20	67	25	61	46	14	5	33	1.68
38056528--38056599	23	3.3	23	67	25	73	45	18	6	29	1.75
38056503--38056604	43	2.4	43	100	0	204	44	16	6	32	1.74
38059982--38060037	27	2.1	27	86	6	78	23	7	10	58	1.56
38063369--38063403	1	35.0	1	100	0	70	100	0	0	0	0.00
38065516--38065577	30	2.0	31	84	3	81	37	0	43	19	1.51
38065704--38065738	18	1.9	18	88	0	52	40	20	8	31	1.82
38065729--38065803	15	5.5	15	69	22	58	29	20	9	41	1.83
38065713--38065801	38	2.3	38	94	0	160	31	20	7	40	1.81
38071284--38071335	24	2.2	24	82	6	61	65	0	19	15	1.27
38086028--38086076	20	2.5	20	75	0	53	59	6	4	30	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38087488--38087542	17	3.3	17	69	5	58	27	12	5	54	1.60
38087681--38087724	18	2.5	18	85	14	65	65	4	0	29	1.12
38089501--38089564	3	21.3	3	100	0	128	0	32	0	67	0.91
38090437--38090556	25	4.8	25	76	4	116	25	15	21	38	1.92
38090430--38090556	50	2.5	50	81	5	141	25	15	20	38	1.92
38116134--38116218	24	3.5	24	86	0	116	38	17	14	29	1.89
38116975--38117088	41	2.8	41	93	0	192	33	25	13	28	1.93
38117188--38117561	114	3.3	113	88	3	538	25	22	25	26	2.00
38117545--38118525	145	6.7	146	92	2	1645	44	14	16	24	1.86
38119033--38119065	14	2.3	15	94	5	59	30	0	33	36	1.58
38119218--38119288	28	2.6	28	78	12	85	19	0	46	33	1.50
38119224--38119288	14	4.9	12	83	10	58	18	0	47	33	1.49
38119224--38119277	7	7.7	7	83	8	74	18	0	50	31	1.48
38119094--38119412	164	1.9	166	92	1	534	28	0	31	39	1.60
38119426--38119566	76	1.9	76	93	0	246	28	1	25	44	1.62
38119338--38119639	165	1.8	165	87	4	448	29	1	25	43	1.64
38119478--38119639	83	1.9	88	85	10	228	27	2	27	43	1.68
38119688--38119741	21	2.6	21	72	21	51	50	1	5	42	1.36
38119736--38119796	9	7.1	9	78	17	58	63	0	4	31	1.15
38119731--38119786	19	3.2	18	87	7	80	60	0	5	33	1.19
38119736--38119784	9	5.4	9	85	9	64	63	0	6	30	1.19
38130407--38130478	8	8.4	8	71	14	54	36	1	15	47	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38130375--38130452	22	4.1	19	72	18	72	34	1	12	51	1.48
38130636--38130699	27	2.4	27	97	0	119	15	32	21	29	1.95
38130760--38130794	17	2.1	16	89	5	52	54	2	0	42	1.15
38134962--38135000	18	2.2	17	86	13	53	33	0	20	46	1.51
38135120--38135155	8	4.5	8	92	0	63	27	11	25	36	1.90
38135246--38135294	23	2.1	23	88	0	71	22	20	26	30	1.98
38141856--38141920	29	2.3	27	75	15	69	46	30	10	12	1.76
38144032--38144108	24	3.2	24	83	3	93	14	38	6	40	1.72
38146486--38146556	35	2.0	35	100	0	142	42	30	2	23	1.69
38148271--38148306	16	2.2	17	90	5	56	36	0	52	11	1.37
38162873--38162953	24	3.4	24	76	10	76	14	38	6	40	1.71
38172114--38172399	138	2.1	140	91	2	461	45	4	8	41	1.54
38172375--38172514	75	1.9	75	89	3	219	32	12	7	47	1.69
38174749--38174796	25	2.0	25	84	12	64	35	2	2	60	1.20
38183947--38184260	160	2.0	160	93	0	538	33	14	18	33	1.91
38191235--38191334	50	2.0	50	94	0	173	43	2	15	40	1.58
38200424--38200458	17	1.9	19	88	11	56	8	5	8	77	1.13
38202189--38202386	51	3.9	50	78	4	218	26	16	25	30	1.97
38202193--38202377	101	1.8	101	85	3	264	25	16	25	31	1.96
38202381--38202475	45	2.1	45	90	0	154	27	18	23	30	1.98
38214788--38214914	59	2.1	60	83	1	157	40	4	11	42	1.62
38220406--38220502	30	3.1	34	63	27	88	30	10	12	46	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38225642--38225695	22	2.3	24	84	15	69	35	3	5	55	1.41
38227964--38228015	23	2.3	23	93	0	86	30	17	17	34	1.93
38231413--38231475	29	2.1	32	85	8	87	55	0	0	44	0.99
38232749--38232809	26	2.3	26	80	2	68	59	6	3	31	1.39
38236050--38236097	20	2.4	21	82	6	55	47	14	0	37	1.44
38241521--38241551	4	7.8	4	100	0	62	25	22	0	51	1.48
38241549--38241597	2	24.5	2	91	0	80	44	2	2	51	1.24
38242043--38242120	17	4.9	17	79	19	71	41	0	0	58	0.98
38242051--38242120	17	4.4	17	79	20	89	41	0	0	58	0.98
38242055--38242120	30	2.2	30	91	5	107	40	0	0	59	0.98
38244160--38244355	49	4.1	49	84	7	278	31	8	11	48	1.68
38244160--38244351	92	2.1	92	98	0	366	31	8	11	48	1.69
38245481--38245543	31	2.0	31	100	0	126	28	6	22	42	1.78
38245775--38245817	21	2.0	21	86	8	61	34	0	6	58	1.25
38245833--38245905	10	7.9	10	69	14	50	41	0	1	57	1.07
38245832--38245905	28	2.8	27	78	11	73	40	0	1	58	1.07
38245868--38246005	26	5.5	25	69	22	94	41	0	3	54	1.23
38245863--38246075	99	2.2	99	98	0	410	40	1	4	53	1.30
38245962--38246352	120	3.3	119	93	1	646	41	1	3	52	1.27
38246074--38246252	26	7.3	25	65	22	85	41	0	2	54	1.19
38245863--38246102	99	2.4	97	90	4	349	40	1	4	53	1.28
38246113--38246159	23	2.0	24	84	15	64	40	2	4	53	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38246125--38246316	37	4.9	37	71	17	104	42	1	4	51	1.32
38246016--38246315	64	5.1	58	70	22	223	42	1	4	52	1.29
38246492--38246584	44	2.1	44	88	9	136	35	26	4	33	1.76
38246573--38246603	16	1.9	16	100	0	62	29	32	0	38	1.57
38248414--38248481	29	2.5	27	78	19	70	25	5	4	64	1.35
38248857--38248895	18	2.2	17	90	4	60	15	5	5	74	1.17
38261196--38261827	99	6.4	99	84	5	723	31	24	20	22	1.98
38261196--38261820	50	12.7	50	66	9	277	32	24	20	22	1.98
38261196--38261827	194	3.2	196	82	7	739	31	24	20	22	1.98
38263143--38263188	17	2.7	17	89	0	74	15	2	4	78	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204