Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 ID=Chr07-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  60982465

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  11  of  204  ( 24458 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4168567--4168606
6
6.7
6
82
0
53
70
2
15
12
1.28
4181824--4181857
7
4.9
7
100
0
68
44
29
0
26
1.55
4194206--4194285
28
2.8
29
79
7
92
23
20
10
46
1.80
4197837--4197875
3
13.0
3
100
0
78
33
0
0
66
0.92
4199373--4199427
25
2.2
25
87
3
85
23
10
18
47
1.80
4206520--4206570
15
3.5
15
72
22
54
33
3
0
62
1.13
4207873--4207915
22
2.0
22
100
0
86
37
13
25
23
1.92
4208828--4208852
13
1.9
13
100
0
50
40
20
8
32
1.81
4210208--4210245
4
9.5
4
88
11
60
73
2
0
23
0.95
4214043--4214086
22
2.0
22
86
4
63
40
11
4
43
1.61
4214676--4214739
13
4.9
13
92
0
110
39
26
9
25
1.86
4216350--4216392
17
2.6
16
78
10
50
44
6
0
48
1.29
4220082--4220141
30
2.0
30
100
0
120
20
0
20
60
1.37
4223116--4223158
17
2.4
19
88
7
63
51
11
2
34
1.51
4225496--4225574
33
2.6
29
73
24
74
36
40
5
17
1.72
4225568--4225643
36
2.1
36
82
4
91
43
35
2
18
1.64
4225695--4225953
93
2.8
93
88
4
310
37
33
13
15
1.87
4225760--4225953
93
2.1
93
99
0
379
38
31
13
15
1.87
4229130--4229250
59
2.1
59
82
1
145
26
13
8
52
1.68
4229442--4229597
40
3.8
40
87
7
208
64
0
3
32
1.09
4229557--4229581
11
2.3
11
100
0
50
52
0
8
40
1.31
4232806--4232865
31
1.9
32
89
3
95
55
5
11
28
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4238088--4238127
6
6.7
6
100
0
80
50
32
0
17
1.47
4238704--4238733
15
2.0
15
100
0
60
33
6
20
40
1.78
4240186--4240218
15
2.2
15
89
10
50
66
0
0
33
0.92
4247216--4247258
23
2.0
22
86
13
63
48
0
0
51
1.00
4247886--4247930
20
2.3
20
80
3
56
35
2
2
60
1.22
4251034--4251064
13
2.5
12
94
5
53
41
0
9
48
1.36
4258593--4258643
27
2.0
27
88
7
79
19
27
21
31
1.97
4261577--4261604
13
2.2
13
100
0
56
17
46
14
21
1.84
4262045--4262079
18
2.0
17
88
5
52
60
0
2
37
1.12
4275301--4275329
2
14.5
2
100
0
58
0
0
48
51
1.00
4288098--4288143
20
2.3
20
85
7
58
56
4
0
39
1.19
4289252--4289276
13
1.9
13
100
0
50
84
0
0
16
0.63
4297532--4297560
1
29.0
1
100
0
58
100
0
0
0
0.00
4304168--4304225
25
2.3
26
80
16
70
41
1
0
56
1.09
4304714--4304760
23
2.0
23
100
0
94
34
17
4
44
1.68
4315982--4316029
25
1.9
25
95
0
87
50
0
0
50
1.00
4328255--4328292
16
2.3
17
86
13
53
52
0
2
44
1.14
4333419--4333521
51
2.0
51
88
3
154
25
16
23
34
1.95
4337716--4337749
14
2.4
14
85
0
50
61
0
2
35
1.11
4344105--4344137
11
3.1
11
86
4
50
54
0
0
45
0.99
4346171--4346244
29
2.4
32
78
10
75
52
9
25
12
1.68
4370704--4370736
6
5.7
6
89
7
50
33
0
0
66
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4374221--4374255
2
17.5
2
100
0
70
51
0
0
48
1.00
4375621--4375667
24
2.0
24
83
8
60
70
10
8
10
1.35
4377414--4377443
15
2.0
15
100
0
60
0
6
6
86
0.70
4378060--4378107
14
3.4
14
97
0
87
29
6
14
50
1.67
4384433--4384470
19
2.0
19
94
0
67
34
5
23
36
1.78
4391465--4391493
6
5.0
6
95
4
51
86
0
13
0
0.58
4391835--4391872
3
12.7
3
100
0
76
34
0
0
65
0.93
4402998--4403061
29
2.1
31
82
11
78
50
7
0
42
1.31
4402983--4403137
83
1.9
82
80
10
181
50
7
2
40
1.43
4421384--4421412
6
4.8
6
100
0
58
68
0
31
0
0.89
4421842--4421884
2
21.5
2
95
0
77
0
51
0
48
1.00
4425292--4425319
9
3.1
9
100
0
56
57
10
0
32
1.33
4425262--4425471
68
3.1
68
95
1
379
45
9
5
40
1.58
4425360--4425387
9
3.1
9
100
0
56
57
10
0
32
1.33
4425460--4425501
16
2.6
16
88
0
57
45
7
2
45
1.44
4425475--4425530
23
2.5
23
88
2
87
44
3
1
50
1.29
4429448--4429474
2
13.5
2
100
0
54
0
48
0
51
1.00
4430820--4430872
18
3.2
17
82
15
58
49
0
1
49
1.12
4430804--4430869
22
3.0
23
74
12
66
48
0
3
48
1.17
4440456--4440528
22
3.5
22
75
16
73
58
1
0
39
1.06
4440459--4440529
20
3.5
20
74
14
65
59
1
0
39
1.06
4440480--4440537
20
2.9
19
82
7
62
56
1
0
41
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4442613--4442670
10
5.6
10
76
13
55
65
0
3
31
1.09
4442611--4442650
21
2.0
21
90
5
64
70
0
0
30
0.88
4443464--4443512
19
2.5
20
86
3
64
34
2
12
51
1.51
4444167--4444196
2
15.0
2
100
0
60
0
50
0
50
1.00
4451230--4451274
23
2.0
23
81
0
54
64
2
0
33
1.06
4451831--4451879
20
2.6
18
75
15
53
53
0
2
44
1.12
4455211--4455270
23
2.4
24
86
13
86
70
0
10
20
1.16
4455289--4455334
20
2.2
21
84
3
58
58
2
6
32
1.36
4455342--4455389
18
2.8
17
84
12
62
62
4
6
27
1.38
4455582--4455615
15
2.2
16
89
5
52
17
5
0
76
0.98
4455764--4455812
25
1.9
26
95
4
91
26
28
2
42
1.66
4457583--4457620
11
3.5
11
82
13
51
15
0
2
81
0.80
4459268--4459302
16
2.2
16
90
10
54
40
2
0
57
1.14
4464278--4464317
20
2.0
20
100
0
80
25
0
5
70
1.08
4465717--4465759
22
2.0
22
85
0
59
60
6
9
23
1.51
4469189--4469258
33
2.1
33
100
0
140
40
20
8
31
1.82
4469420--4469449
14
2.1
14
100
0
60
63
13
16
6
1.50
4472143--4472197
16
3.4
16
82
0
65
43
5
29
21
1.75
4472181--4472269
44
2.0
46
88
4
137
28
3
30
38
1.73
4472374--4472494
56
2.1
57
80
8
140
49
3
0
47
1.18
4474092--4474232
68
2.1
68
93
0
237
37
15
12
34
1.86
4481594--4481621
4
7.0
4
100
0
56
75
0
0
25
0.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4481633--4481691
24
2.5
22
78
13
64
33
0
6
59
1.24
4484631--4484670
20
2.0
20
95
0
71
30
17
0
52
1.45
4485731--4485765
9
3.9
9
100
0
70
57
0
0
42
0.99
4503397--4503435
6
6.7
6
82
5
53
61
2
0
35
1.10
4504106--4504164
9
6.4
9
79
11
66
40
25
10
23
1.86
4505073--4505108
3
12.0
3
100
0
72
33
0
0
66
0.92
4511187--4511226
12
3.6
11
90
9
64
65
0
0
35
0.93
4516244--4516401
44
3.3
51
80
13
215
28
24
15
32
1.95
4525086--4525112
6
4.5
6
100
0
54
51
0
14
33
1.43
4540167--4540228
22
2.8
22
92
0
97
35
14
25
24
1.93
4546019--4546071
5
10.0
5
83
8
61
37
1
1
58
1.20
4552514--4552550
13
2.8
13
83
0
56
70
0
0
29
0.88
4560493--4560546
19
2.8
21
76
18
64
66
0
1
31
1.02
4566400--4566456
22
2.6
22
91
0
87
35
15
26
22
1.94
4578555--4578587
14
2.4
14
90
10
50
66
6
3
24
1.28
4585929--4585975
24
1.9
25
86
4
69
31
2
4
61
1.27
4587968--4588013
24
1.9
24
86
0
65
36
26
23
13
1.91
4589507--4589597
45
2.0
45
93
0
155
32
8
9
48
1.67
4603771--4603798
6
4.7
6
100
0
56
82
0
0
17
0.68
4606462--4606548
42
2.1
42
100
0
174
36
20
17
25
1.94
4619706--4619732
1
27.0
1
100
0
54
100
0
0
0
0.00
4621560--4621624
30
2.1
32
82
5
80
49
9
1
40
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4632339--4632393
3
18.3
3
88
0
65
0
25
32
41
1.56
4641306--4641367
30
2.1
30
93
0
106
58
12
3
25
1.50
4642037--4642078
16
2.6
16
81
7
50
35
0
11
52
1.38
4642035--4642079
17
2.8
16
83
13
56
37
0
11
51
1.38
4643225--4643287
20
3.2
20
81
0
63
46
0
1
52
1.10
4643855--4643894
9
4.4
9
87
9
55
57
5
0
37
1.21
4644429--4644463
3
11.7
3
100
0
70
31
0
0
68
0.90
4644841--4644891
21
2.4
22
80
6
61
11
9
15
62
1.53
4645959--4646358
159
2.5
159
91
3
617
40
11
26
23
1.87
4650572--4650597
3
8.7
3
100
0
52
34
0
0
65
0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204