genome.fa.s7.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 ID=Chr07-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  60982465

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  122  of  204  ( 24458 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37269008--37269249	83	2.9	81	84	5	297	29	14	14	40	1.86
37270178--37270317	14	9.9	14	70	9	86	45	33	1	20	1.60
37270237--37270305	21	3.2	20	69	25	52	46	33	1	18	1.58
37270498--37270822	41	8.0	41	85	2	447	29	28	22	19	1.98
37270498--37270822	82	4.0	82	88	1	501	29	28	22	19	1.98
37270879--37270972	40	2.4	40	80	8	113	27	19	21	31	1.97
37270903--37270995	40	2.3	41	81	5	109	21	20	21	36	1.95
37271001--37271026	12	2.2	12	100	0	52	46	30	15	7	1.74
37275383--37275415	16	2.1	16	94	5	59	54	6	6	33	1.50
37282201--37282242	19	2.2	19	91	0	66	57	0	4	38	1.20
37286586--37286781	27	7.3	27	74	10	161	42	20	18	17	1.90
37286587--37286782	53	3.7	53	76	11	204	42	20	18	17	1.90
37286926--37287026	26	3.9	26	80	0	103	19	19	20	39	1.93
37287149--37287228	28	2.9	28	86	1	108	21	21	27	30	1.98
37299972--37299997	13	2.0	13	100	0	52	53	30	0	15	1.42
37300662--37300705	22	2.0	22	86	4	63	34	11	29	25	1.91
37300746--37300803	27	2.1	28	81	9	66	74	3	17	5	1.15
37301335--37301414	14	5.6	14	83	2	97	16	25	25	33	1.95
37301841--37302008	76	2.2	76	84	2	221	26	18	25	30	1.98
37307163--37307219	14	4.5	13	77	18	57	71	1	1	24	1.04
37315257--37315604	85	4.1	84	85	4	412	29	28	17	25	1.97
37315275--37315587	171	1.8	170	87	3	468	28	28	17	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37315273--37315604	43	7.8	42	82	4	407	29	28	17	25	1.97
37320858--37320913	22	2.6	21	82	5	67	41	39	0	19	1.52
37321387--37321668	41	6.9	40	90	4	377	32	30	22	14	1.94
37321374--37321668	123	2.4	123	86	2	416	30	30	23	15	1.95
37322945--37322969	10	2.5	10	100	0	50	72	8	0	20	1.10
37324344--37324404	28	2.2	28	87	0	86	54	13	21	11	1.70
37327452--37327504	29	1.9	28	81	11	65	41	1	15	41	1.57
37334397--37334439	20	2.2	20	91	0	68	41	18	25	13	1.88
37335701--37335737	17	2.2	17	100	0	74	18	29	10	40	1.85
37340140--37340183	23	1.9	23	95	0	79	36	15	22	25	1.94
37341164--37341207	20	2.2	20	95	0	79	13	25	20	40	1.89
37341243--37341299	11	5.6	10	78	13	55	70	0	29	0	0.88
37341242--37341310	14	5.0	14	78	1	68	72	0	27	0	0.85
37341242--37341304	28	2.3	28	84	10	85	71	0	28	0	0.86
37341235--37341311	14	6.2	12	76	19	63	70	1	28	0	0.96
37341473--37341591	60	2.0	60	93	0	202	33	0	11	54	1.37
37341725--37341766	17	2.5	17	88	0	57	23	0	2	73	0.94
37341734--37341773	21	2.0	19	85	9	53	30	0	2	67	1.04
37345796--37345867	33	2.2	33	82	5	83	16	43	11	29	1.82
37349363--37349486	27	4.6	27	82	4	151	22	29	26	21	1.99
37350558--37350612	27	2.0	27	100	0	110	41	25	10	21	1.86
37354935--37354971	18	2.1	18	94	0	65	18	10	8	62	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37354941--37354984	18	2.4	18	84	0	52	20	13	6	59	1.57
37356441--37356554	60	1.9	60	81	0	138	22	16	12	48	1.80
37356932--37357095	59	2.7	59	85	2	213	42	11	18	27	1.84
37356988--37357095	31	3.6	31	72	16	109	42	11	20	25	1.85
37364921--37364963	22	2.0	22	81	9	52	44	11	9	34	1.73
37367272--37367412	76	1.9	76	83	0	183	26	14	17	40	1.89
37367473--37367528	25	2.2	25	90	0	85	39	17	25	17	1.92
37369906--37370226	27	12.5	26	64	20	74	57	4	5	31	1.44
37370949--37370998	15	3.4	15	81	8	50	78	8	8	6	1.11
37371574--37371936	26	14.3	24	66	19	93	58	4	6	30	1.42
37371562--37371926	27	14.2	26	64	20	85	58	4	6	30	1.42
37371824--37371909	25	3.3	25	75	18	86	62	1	6	29	1.28
37371797--37371922	27	4.8	27	77	11	95	61	1	6	30	1.30
37371801--37371930	52	2.5	53	81	7	158	63	1	6	29	1.28
37373882--37373918	19	1.9	19	94	0	65	51	2	0	45	1.15
37374607--37374642	13	2.8	13	88	12	56	77	0	22	0	0.76
37391626--37391655	16	1.9	16	93	6	53	50	10	0	40	1.36
37392275--37392381	49	2.2	49	82	0	124	21	35	19	23	1.96
37394081--37394134	25	2.2	25	83	6	65	42	16	22	18	1.89
37395361--37395396	11	3.5	11	92	7	58	86	5	0	8	0.72
37396034--37396118	43	2.0	42	95	2	152	41	10	17	30	1.83
37403133--37403161	14	2.0	15	93	6	51	51	27	0	20	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37411215--37411293	39	2.0	39	100	0	158	41	10	17	30	1.83
37418007--37418162	84	1.8	85	81	9	194	28	19	23	28	1.98
37417870--37418713	44	19.5	43	70	14	320	28	20	23	27	1.99
37417779--37418757	217	4.5	217	91	1	1504	27	20	23	28	1.99
37417783--37418757	427	2.3	429	89	3	1470	28	20	23	28	1.99
37419111--37419160	26	1.9	26	83	0	64	16	46	20	18	1.85
37420243--37420308	23	2.7	24	81	11	80	33	1	4	60	1.26
37420380--37420420	3	13.7	3	100	0	82	65	0	0	34	0.93
37420419--37420445	3	9.0	3	100	0	54	33	0	0	66	0.92
37420716--37420757	19	2.2	20	82	4	50	30	7	11	50	1.66
37422852--37422906	28	2.0	28	100	0	110	32	23	18	25	1.97
37424240--37424297	6	9.7	6	94	0	89	46	18	3	31	1.66
37429567--37429773	40	5.2	40	80	2	209	33	15	28	22	1.95
37429567--37429773	80	2.6	79	84	3	252	33	15	28	22	1.95
37430542--37430572	14	2.1	15	94	5	55	29	6	0	64	1.18
37437041--37437169	45	2.9	44	80	10	145	37	27	13	21	1.92
37446058--37446104	25	1.9	24	82	4	58	53	25	0	21	1.46
37453501--37453569	34	2.0	34	94	0	120	40	8	24	26	1.84
37458392--37458437	19	2.4	19	77	0	56	17	21	28	32	1.96
37464269--37464307	20	2.0	20	94	0	69	51	5	17	25	1.66
37464902--37464962	24	2.5	25	82	12	74	62	13	9	14	1.55
37471439--37471496	29	2.1	27	81	12	64	27	8	12	51	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37471880--37471939	29	2.1	29	93	0	102	25	13	6	55	1.62
37479639--37479707	21	3.3	21	95	0	120	17	34	21	26	1.95
37490357--37490445	33	2.7	33	100	0	178	41	26	10	21	1.85
37490977--37491064	40	2.2	40	89	4	133	47	26	14	11	1.78
37501582--37501689	50	2.2	50	89	0	162	33	21	20	25	1.97
37501562--37501698	25	5.5	25	76	0	123	33	20	21	24	1.97
37505812--37505858	25	1.9	24	82	4	58	53	10	17	19	1.72
37508748--37508821	30	2.5	29	84	4	94	39	9	28	22	1.85
37514491--37514560	30	2.4	29	83	6	88	40	11	24	24	1.88
37514498--37514573	30	2.6	30	80	2	82	39	14	23	22	1.91
37516208--37516287	30	2.7	30	82	3	99	30	21	26	22	1.99
37522898--37522965	32	2.1	32	100	0	136	27	8	26	36	1.86
37524119--37524361	50	4.8	49	82	5	281	21	30	20	26	1.98
37524119--37524362	100	2.4	100	86	4	323	21	30	20	27	1.98
37531644--37531887	50	4.9	50	83	0	308	21	30	21	26	1.98
37535410--37535540	32	4.1	32	78	5	133	36	19	22	22	1.95
37535416--37535541	64	2.0	62	86	9	173	36	19	22	22	1.95
37535726--37535774	24	2.0	24	92	0	80	42	24	8	24	1.81
37535793--37536137	27	12.8	27	79	7	267	23	20	20	36	1.95
37535793--37536137	54	6.4	54	81	3	372	23	20	20	36	1.95
37535793--37536137	81	4.3	81	83	2	442	23	20	20	36	1.95
37540997--37541035	20	2.0	20	90	10	62	15	23	5	56	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37541608--37541669	28	2.3	27	91	2	97	19	22	24	33	1.97
37550190--37550400	54	3.9	54	80	3	230	43	20	19	17	1.89
37550190--37550386	27	7.4	27	79	4	202	45	18	19	16	1.86
37550190--37550386	53	3.7	52	81	4	223	45	18	19	16	1.86
37556935--37557068	50	2.6	50	83	7	151	26	26	20	26	1.99
37565189--37565313	50	2.5	50	88	2	180	20	28	24	26	1.99
37576292--37576362	27	2.6	28	77	4	90	36	36	14	12	1.84
37578125--37578149	7	3.6	7	100	0	50	76	0	0	24	0.80
37580782--37580829	23	2.0	25	84	8	64	35	22	0	41	1.54
37581033--37581131	23	4.3	23	80	5	119	32	28	17	22	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204