Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 ID=Chr07-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  60982465

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  193  of  204  ( 24458 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56976224--56976248
2
12.5
2
100
0
50
52
0
0
48
1.00
56976762--56976855
49
1.9
49
84
0
125
30
27
13
27
1.94
56977668--56978000
102
3.3
102
92
0
549
30
27
21
20
1.98
56978023--56978208
101
1.8
101
87
6
261
30
26
17
25
1.97
56985686--56985726
20
2.0
21
85
4
57
21
26
2
48
1.63
56986322--56986352
14
2.1
15
94
5
55
25
25
0
48
1.52
56993916--56993962
18
2.8
17
84
9
60
12
25
23
38
1.90
57003935--57003965
14
2.1
15
94
5
55
25
25
0
48
1.52
57015202--57015370
87
1.9
87
91
2
277
30
21
17
30
1.96
57016838--57016878
20
2.0
21
90
4
66
19
29
4
46
1.71
57017015--57017087
36
2.0
36
100
0
146
19
19
10
50
1.76
57017505--57017535
14
2.1
15
94
5
55
25
25
0
48
1.52
57031229--57031257
14
2.0
15
93
6
51
27
24
0
48
1.51
57038892--57039166
146
1.9
146
93
2
480
40
11
14
34
1.81
57040810--57040860
20
2.8
18
77
13
59
54
1
3
39
1.30
57041758--57041791
18
1.9
17
88
5
50
23
5
14
55
1.61
57042812--57042862
16
3.3
16
71
20
54
25
7
11
54
1.63
57042802--57042932
30
4.2
29
75
19
131
23
6
7
61
1.47
57042867--57042914
12
3.8
12
81
10
51
22
4
6
66
1.32
57042870--57042936
26
2.4
29
87
9
95
22
5
5
65
1.37
57042810--57042939
64
2.0
67
89
6
203
23
6
7
61
1.48
57043100--57043481
158
2.4
156
87
4
552
54
8
8
27
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57043502--57043572
27
2.6
27
77
0
79
8
29
33
28
1.86
57045675--57045725
18
2.8
18
84
0
75
39
29
7
23
1.83
57051483--57051511
14
2.0
15
93
6
51
27
24
0
48
1.51
57053655--57053695
18
2.3
18
100
0
82
36
14
26
21
1.93
57053762--57053817
27
2.2
25
90
6
85
42
3
0
53
1.18
57055010--57055267
129
2.0
129
94
0
453
32
12
17
37
1.87
57058304--57058364
29
2.1
29
81
6
70
26
27
6
39
1.81
57058766--57058807
13
3.4
12
84
12
50
71
0
28
0
0.86
57058768--57058815
23
2.1
23
84
7
62
66
0
33
0
0.92
57058775--57058814
18
2.1
18
90
9
62
67
0
32
0
0.91
57058891--57058941
11
4.5
11
82
4
66
74
0
23
1
0.92
57059558--57059600
18
2.4
18
88
11
63
32
11
4
51
1.59
57059622--57059712
17
5.4
16
73
10
74
27
12
13
47
1.78
57059621--57059729
18
6.2
18
70
12
75
27
12
12
46
1.79
57059622--57059730
35
3.1
34
76
12
114
26
12
12
47
1.78
57063908--57063962
28
2.0
28
85
7
76
40
0
1
58
1.09
57063911--57064007
38
2.6
38
79
11
110
38
3
3
55
1.31
57068312--57068343
15
2.1
16
94
5
57
68
3
0
28
1.04
57071520--57071550
13
2.3
14
94
5
55
74
0
0
25
0.82
57071578--57071614
19
2.0
18
89
5
56
78
0
0
21
0.75
57071681--57071767
18
4.6
20
68
21
62
55
1
3
40
1.24
57071889--57071929
15
2.7
15
85
7
57
60
4
4
29
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57081050--57081080
2
15.5
2
100
0
62
51
0
0
48
1.00
57089285--57089314
15
2.0
15
100
0
60
26
20
6
46
1.75
57089987--57090025
19
2.1
18
95
4
69
43
15
2
38
1.60
57091912--57091979
6
11.3
6
100
0
136
0
16
0
83
0.64
57091975--57092280
111
2.7
111
93
1
524
34
23
12
30
1.91
57096896--57096938
6
6.8
6
81
7
50
44
16
20
18
1.87
57096916--57097022
45
2.4
45
88
0
169
40
19
19
20
1.92
57105102--57105184
31
2.6
31
92
7
132
39
3
0
56
1.17
57112608--57112633
12
2.2
12
100
0
52
38
26
15
19
1.91
57123759--57123826
34
2.0
34
94
5
120
32
23
14
29
1.94
57129774--57129805
15
2.1
16
94
5
57
68
3
0
28
1.04
57143606--57143637
3
11.3
3
87
12
50
31
0
0
68
0.90
57144134--57144172
2
19.5
2
100
0
78
48
0
0
51
1.00
57145012--57145060
22
2.3
22
86
6
66
40
0
6
53
1.26
57149908--57149943
15
2.5
14
86
8
54
44
8
0
47
1.33
57157942--57157984
10
4.3
10
75
0
50
65
2
6
25
1.30
57158013--57158048
15
2.5
14
86
8
54
44
8
0
47
1.33
57162888--57162998
23
4.8
23
98
0
213
29
25
30
14
1.95
57177926--57177956
14
2.1
15
94
5
55
25
25
0
48
1.52
57181059--57181093
17
2.1
17
89
10
54
60
0
0
40
0.97
57183359--57183396
17
2.2
17
90
0
58
57
7
26
7
1.54
57190033--57190057
3
8.3
3
100
0
50
0
0
68
32
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57194832--57194869
3
12.7
3
100
0
76
34
0
0
65
0.93
57195421--57195470
2
25.0
2
100
0
100
50
0
0
50
1.00
57196416--57196446
14
2.1
15
94
5
55
25
25
0
48
1.52
57200998--57201022
12
2.1
12
100
0
50
40
8
0
52
1.31
57202882--57202942
31
2.0
31
93
0
104
39
8
3
49
1.49
57205933--57205980
24
2.0
25
83
4
62
50
8
14
27
1.71
57215206--57215246
21
2.0
21
90
0
64
48
2
4
43
1.37
57216746--57216776
14
2.1
15
94
5
55
25
25
0
48
1.52
57224681--57224798
60
2.0
61
83
8
152
42
6
6
44
1.57
57230525--57230691
87
1.9
87
92
2
282
31
21
16
30
1.96
57232348--57232416
36
1.9
36
100
0
138
18
20
10
50
1.75
57232836--57232865
14
2.1
15
93
6
53
26
26
0
46
1.53
57240720--57240775
29
1.9
30
82
10
71
30
7
10
51
1.63
57244305--57244333
14
2.0
15
93
6
51
27
24
0
48
1.51
57247932--57248011
35
2.3
34
78
20
85
40
2
5
52
1.37
57248294--57248348
21
2.6
21
91
8
94
27
40
9
23
1.85
57254463--57254517
5
11.2
5
78
18
62
60
1
0
38
1.08
57254461--57254517
17
3.5
16
81
13
64
57
1
0
40
1.09
57263807--57263845
19
2.1
18
95
4
69
43
15
2
38
1.60
57265678--57265739
6
10.3
6
100
0
124
0
16
0
83
0.64
57265735--57266040
111
2.7
111
92
0
513
33
23
12
30
1.92
57270653--57270707
6
8.8
6
86
6
74
45
16
20
18
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57270687--57270791
45
2.3
45
91
0
174
40
20
19
20
1.91
57278448--57278506
28
2.1
27
81
9
66
27
11
20
40
1.87
57291912--57291954
18
2.4
18
80
7
52
58
0
6
34
1.25
57316735--57316760
6
4.3
6
100
0
52
15
30
0
53
1.42
57322627--57322690
27
2.2
31
81
13
82
45
0
0
54
0.99
57322644--57322687
15
2.9
15
79
0
52
43
0
0
56
0.99
57322715--57322750
16
2.2
16
95
0
63
44
0
8
47
1.33
57322749--57322782
18
1.9
18
88
5
52
41
0
2
55
1.15
57323132--57323168
14
2.6
14
95
0
65
43
8
10
37
1.69
57323174--57323211
19
2.0
19
100
0
76
47
15
5
31
1.68
57323673--57323706
14
2.4
14
95
0
59
35
0
2
61
1.11
57323814--57323851
2
19.0
2
100
0
76
50
0
0
50
1.00
57330492--57330600
54
2.0
54
94
3
193
57
0
1
40
1.09
57337330--57337363
7
4.7
7
88
3
50
70
0
0
29
0.87
57337324--57337396
36
2.0
36
82
10
87
65
2
0
31
1.06
57338046--57338202
40
3.8
41
84
6
194
63
0
1
33
1.10
57338106--57338175
23
3.3
23
69
24
71
62
0
2
34
1.10
57340656--57340713
22
2.5
22
88
5
80
44
0
5
50
1.24
57340656--57340729
24
3.4
22
83
12
82
40
0
4
55
1.19
57340617--57340722
56
1.9
56
83
11
137
40
0
4
53
1.28
57340659--57340724
20
3.1
21
85
10
73
40
0
4
54
1.21
57342151--57342192
6
7.0
6
94
0
75
33
30
2
33
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57342546--57342639
46
2.0
46
100
0
188
35
17
14
32
1.90
57344565--57344607
20
2.2
20
82
0
50
34
0
6
58
1.25
57358110--57358148
21
1.9
20
84
5
51
30
2
25
41
1.69
57359651--57359726
39
1.9
39
89
0
116
26
11
30
31
1.92
57360424--57360688
132
2.0
133
96
0
496
40
17
12
29
1.87
57365059--57365083
13
1.9
13
100
0
50
68
0
0
32
0.90
57366538--57366580
10
4.5
10
80
11
54
41
0
0
58
0.98
57367687--57367713
7
3.9
7
100
0
54
40
14
0
44
1.46
57367833--57367875
6
6.8
6
81
7
50
44
16
20
18
1.87
57369101--57369144
3
14.7
3
95
0
79
29
0
2
68
1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204