Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: Chr07 ID=Chr07-JGI_221_v2.0 Parameters: 2 7 7 80 10 50 1000 Length: 60982465

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  48  of  204  ( 24458 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15931166--15931204
17
2.3
17
90
0
60
56
0
5
38
1.22
15931210--15931278
3
22.7
3
86
5
95
63
1
0
34
1.03
15931862--15931895
17
2.1
16
88
5
50
79
2
0
17
0.86
15932913--15933513
44
13.8
44
67
10
232
29
20
18
31
1.96
15932865--15933166
129
2.3
129
90
0
460
28
21
19
30
1.98
15933002--15933623
175
3.6
175
90
0
938
29
20
18
32
1.96
15933694--15933829
42
3.2
41
63
20
98
27
21
19
31
1.97
15933668--15934654
439
2.3
439
89
3
1470
26
24
22
26
2.00
15933668--15934654
88
11.2
88
93
0
1443
26
24
22
26
2.00
15935729--15935775
21
2.2
21
85
7
60
27
36
10
25
1.89
15936781--15936828
1
48.0
1
78
0
51
6
4
0
89
0.58
15936780--15936813
9
3.9
9
92
7
61
11
0
0
88
0.52
15936782--15936828
8
5.8
8
87
9
60
6
4
0
89
0.59
15936784--15936828
17
2.7
17
86
10
58
6
4
0
88
0.61
15938898--15938946
19
2.5
20
80
6
57
42
12
18
26
1.85
15944463--15944519
30
1.9
30
85
3
80
19
35
0
45
1.50
15953508--15953547
19
2.1
19
100
0
80
45
5
15
35
1.68
15959667--15959717
23
2.3
22
83
6
66
27
11
23
37
1.90
15959906--15959961
29
1.9
29
85
0
76
19
37
0
42
1.52
15967811--15967872
21
2.8
23
86
11
78
54
4
1
38
1.31
15967811--15967874
22
3.0
21
82
13
76
56
4
1
37
1.30
15969836--15970050
108
2.0
109
84
0
279
32
14
13
40
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15973889--15973983
27
3.7
27
75
16
103
29
14
15
40
1.88
15973890--15973981
48
1.9
48
90
0
148
29
15
16
39
1.89
15974720--15974773
22
2.5
21
80
17
65
42
11
12
33
1.79
15978123--15978161
19
2.0
20
85
14
55
61
10
0
28
1.28
15978170--15978210
20
2.0
20
86
9
57
53
4
2
39
1.35
15978552--15978627
22
3.4
22
66
20
66
35
2
26
35
1.71
15978547--15978641
46
2.1
46
97
0
181
34
2
23
40
1.66
15983073--15983169
46
2.1
47
94
3
169
36
2
22
39
1.66
15987079--15987117
20
2.0
20
84
0
51
38
12
25
23
1.90
15987905--15988148
121
2.0
119
88
3
364
32
18
9
39
1.83
15996099--15996158
30
2.0
30
83
3
75
40
0
38
21
1.54
15999613--15999674
16
4.3
14
75
18
56
72
6
19
1
1.15
16000487--16000625
40
3.5
41
73
8
126
28
15
23
33
1.95
16000500--16000621
37
3.1
38
72
12
113
26
14
22
36
1.93
16004530--16004565
18
2.1
17
89
5
54
5
52
41
0
1.24
16004735--16004761
11
2.5
11
100
0
54
40
7
0
51
1.30
16004718--16004834
39
2.9
39
87
5
180
35
2
0
61
1.10
16004764--16004832
18
3.7
17
70
19
57
39
1
0
59
1.06
16005183--16005318
38
3.5
38
87
8
195
35
2
0
61
1.11
16005197--16005302
11
10.4
11
68
26
56
37
3
0
58
1.16
16009175--16009361
43
4.4
43
75
6
137
24
16
28
31
1.96
16011263--16011313
17
3.2
16
78
8
59
3
13
3
78
1.03
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16013354--16013415
28
2.2
28
94
0
106
43
11
35
9
1.73
16014461--16014499
20
2.0
20
95
5
71
51
2
5
41
1.38
16015407--16015446
13
2.9
14
85
7
55
62
0
10
27
1.27
16015797--16015859
21
2.9
22
88
4
76
15
23
25
34
1.95
16015814--16015859
21
2.2
21
96
0
83
17
30
23
28
1.97
16015814--16015870
21
2.8
21
89
2
71
17
24
24
33
1.96
16039546--16039579
17
2.0
17
94
0
59
26
20
23
29
1.99
16041287--16041322
3
12.0
3
100
0
72
66
0
0
33
0.92
16046675--16046699
12
2.1
12
100
0
50
32
8
16
44
1.76
16049721--16049760
18
2.1
19
90
9
64
50
2
0
47
1.14
16049709--16049766
20
2.6
23
74
23
61
50
1
0
48
1.11
16058624--16058652
2
14.5
2
100
0
58
51
0
0
48
1.00
16067129--16067194
26
2.6
26
83
4
91
36
9
10
43
1.71
16067703--16067755
16
3.3
15
80
20
54
26
1
1
69
1.09
16067710--16067791
19
4.7
18
70
14
64
26
4
1
67
1.19
16073648--16073714
34
1.9
35
93
3
118
46
11
8
32
1.72
16079204--16079406
45
4.4
45
77
9
185
27
19
19
33
1.96
16079369--16079864
262
1.9
262
92
0
839
28
18
20
32
1.96
16082173--16082260
39
2.2
40
85
2
115
36
5
19
38
1.75
16082513--16082632
51
2.3
51
82
1
150
20
19
20
40
1.91
16083462--16083512
17
3.0
17
88
0
75
39
11
11
37
1.79
16091156--16091261
41
2.6
41
90
0
167
31
24
17
26
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16092259--16092286
2
14.0
2
100
0
56
50
0
0
50
1.00
16094632--16094670
17
2.2
18
90
4
62
69
2
0
28
1.02
16094874--16094942
27
2.6
27
97
0
129
40
2
28
27
1.71
16097636--16097676
22
2.0
20
85
9
55
56
0
7
36
1.27
16100781--16100841
27
2.3
27
83
8
72
18
11
4
65
1.42
16101091--16101121
2
15.5
2
100
0
62
0
48
0
51
1.00
16103258--16103450
42
4.6
42
80
5
194
44
17
21
17
1.87
16103322--16103430
21
5.2
21
67
0
74
43
18
20
18
1.89
16103378--16103450
21
3.5
20
71
3
56
47
17
19
15
1.82
16120062--16120140
40
2.0
40
92
0
131
48
21
12
17
1.80
16121123--16121201
40
2.0
40
97
0
149
17
11
22
48
1.79
16121597--16121816
114
1.9
115
91
0
361
33
18
20
27
1.96
16121600--16121855
114
2.2
114
86
3
345
32
19
19
28
1.96
16121799--16122077
139
2.0
140
83
0
353
31
20
19
29
1.97
16122244--16122304
28
2.1
29
82
8
72
22
1
21
54
1.54
16122456--16122664
7
29.7
7
69
4
71
22
2
30
44
1.65
16122624--16122664
15
2.8
15
85
3
57
14
0
34
51
1.43
16122618--16122662
22
2.0
22
91
0
72
15
0
31
53
1.43
16124859--16124968
43
2.5
45
83
7
143
37
4
11
46
1.61
16125216--16125245
9
3.4
9
90
9
53
50
16
0
33
1.46
16125341--16125386
19
2.3
21
85
10
62
41
6
2
50
1.40
16125535--16125808
9
30.9
9
77
13
212
45
15
0
38
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16125535--16125808
17
15.4
18
72
13
212
45
15
0
38
1.49
16125535--16125587
24
2.1
25
86
6
72
50
13
0
35
1.41
16125535--16125810
63
4.5
62
80
13
277
46
15
0
38
1.49
16128657--16128905
50
4.8
50
88
3
336
21
28
22
26
1.99
16129000--16129031
13
2.5
13
94
0
55
56
12
0
31
1.37
16129243--16129300
30
1.9
30
86
6
82
31
22
3
43
1.70
16134446--16134558
43
2.6
43
81
2
129
27
20
25
26
1.99
16135220--16135331
49
2.4
47
79
5
129
29
16
8
46
1.75
16145333--16145375
14
3.1
14
79
0
50
62
2
2
32
1.20
16152356--16152440
30
2.8
29
87
7
116
45
7
20
27
1.76
16157007--16157090
15
5.5
15
73
12
73
45
7
16
30
1.74
16156999--16157085
30
2.9
30
91
0
129
45
6
18
28
1.75
16160158--16160196
19
2.1
19
95
0
69
48
10
12
28
1.74
16171209--16171312
43
2.4
43
78
12
115
19
14
25
40
1.89
16178801--16178907
53
2.0
53
100
0
214
35
29
11
23
1.90
16181991--16182021
2
16.0
2
93
6
55
51
0
0
48
1.00
16187521--16187554
16
2.1
17
89
10
54
11
11
20
55
1.67
16192386--16192432
6
7.7
6
85
7
51
44
14
2
38
1.58
16196308--16196407
40
2.5
40
80
6
96
27
16
20
37
1.93
16196339--16196477
41
3.4
40
82
6
163
24
15
26
33
1.95
16196738--16196837
42
2.4
42
93
0
164
36
10
28
26
1.88
16199058--16199096
11
3.8
11
80
19
57
58
25
10
5
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16199058--16199095
19
2.0
19
100
0
76
57
26
10
5
1.53
16207322--16207371
24
2.2
22
82
10
57
62
10
14
14
1.55
16210404--16210439
18
2.0
18
88
0
54
61
11
2
25
1.43
16216739--16216822
28
3.0
28
100
0
168
21
14
14
50
1.78
16219899--16219967
31
2.4
27
75
13
66
46
10
7
36
1.65
16224147--16224219
31
2.4
31
79
16
82
49
1
5
43
1.34
16225853--16225888
18
2.0
18
88
0
54
19
16
0
63
1.30
16227566--16227624
21
2.8
21
78
0
64
40
0
25
33
1.56
16232238--16232304
34
1.9
35
87
3
100
31
8
14
44
1.76
16237365--16237538
43
4.0
43
78
3
163
38
20
15
25
1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204