genome.fa.s7.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 ID=Chr07-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  60982465

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  150  of  204  ( 24458 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45197173--45197755	175	3.3	175	94	0	959	32	19	20	28	1.97
45197459--45197699	131	1.9	129	80	5	288	30	21	20	28	1.98
45197173--45197795	87	7.2	84	69	10	344	31	19	20	28	1.97
45197633--45197910	129	2.2	129	91	0	448	30	18	21	29	1.97
45197458--45198189	304	2.4	304	94	0	1275	31	18	21	28	1.97
45197762--45198085	175	1.9	175	91	0	540	30	18	21	30	1.97
45197933--45198253	129	2.5	129	89	1	464	30	19	20	29	1.97
45200374--45200415	21	2.0	21	100	0	84	42	4	9	42	1.58
45200414--45200475	32	1.9	32	93	0	106	22	24	27	25	2.00
45200759--45200832	3	24.3	3	78	13	80	29	5	2	62	1.31
45200870--45200905	16	2.2	17	95	5	65	50	0	0	50	1.00
45206361--45206933	286	2.0	286	94	0	995	35	15	19	29	1.93
45215883--45215955	18	4.1	18	73	3	58	42	16	20	20	1.89
45223540--45223641	47	2.3	43	84	6	123	60	5	5	27	1.43
45223722--45223754	15	2.2	15	100	0	66	48	6	6	39	1.53
45223806--45223845	20	2.0	20	100	0	80	55	0	20	25	1.44
45230903--45230934	15	2.1	15	100	0	64	53	0	12	34	1.39
45234879--45235325	171	2.6	170	92	1	707	31	12	14	41	1.83
45237689--45237728	14	3.1	14	80	20	52	50	5	22	22	1.68
45244349--45245007	44	14.8	44	70	11	308	30	18	20	30	1.97
45244374--45244847	182	2.6	178	81	10	493	31	17	21	30	1.96
45244864--45245099	89	2.6	92	78	11	240	32	20	19	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45244756--45245135	44	8.4	43	74	10	219	31	20	19	28	1.97
45248550--45248866	171	1.9	171	91	1	528	31	12	13	41	1.83
45250156--45250195	2	20.0	2	100	0	80	50	0	0	50	1.00
45251262--45251301	14	3.1	14	80	20	52	50	5	22	22	1.68
45254432--45255143	356	2.0	356	97	0	1354	36	19	13	31	1.90
45260382--45260641	45	5.7	45	72	13	131	30	18	25	26	1.98
45260291--45260937	88	7.2	87	71	13	377	31	18	21	28	1.97
45260292--45260783	182	2.7	180	84	8	574	31	17	22	28	1.97
45260342--45260937	44	13.3	44	72	11	268	30	17	22	28	1.97
45261771--45261803	11	2.8	12	86	9	50	6	12	0	81	0.85
45265578--45265610	15	2.1	16	88	5	50	66	12	18	3	1.36
45272752--45272813	32	1.9	32	100	0	124	33	6	25	33	1.82
45273406--45273430	9	2.8	9	100	0	50	72	0	0	28	0.86
45273414--45273459	16	2.9	16	78	15	51	69	2	2	26	1.11
45282347--45282964	171	3.6	171	93	1	1026	31	12	14	41	1.83
45293344--45294034	44	15.3	45	71	12	382	31	18	21	29	1.97
45293324--45293912	44	13.1	44	72	10	383	30	18	21	29	1.97
45293253--45293915	88	7.4	88	73	11	411	30	18	21	29	1.97
45293254--45293906	181	3.6	180	80	8	566	30	18	21	29	1.97
45293324--45293786	182	2.6	183	84	5	541	31	17	22	29	1.96
45294353--45294382	15	2.0	15	93	0	51	56	13	6	23	1.60
45295319--45295347	10	2.7	11	89	10	51	17	6	0	75	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45295838--45295916	26	3.1	26	79	1	88	24	7	10	58	1.57
45297815--45298099	142	2.0	142	100	0	570	40	22	9	28	1.84
45310011--45310454	171	2.6	170	89	3	682	32	12	13	41	1.82
45319280--45319304	13	1.9	13	100	0	50	28	8	16	48	1.74
45320404--45320463	29	2.1	29	81	6	68	61	5	1	31	1.27
45326623--45326652	8	3.8	8	100	0	60	76	0	0	23	0.78
45326616--45326656	16	2.6	16	85	14	66	70	4	0	24	1.06
45329484--45329521	20	1.9	20	84	10	51	26	36	0	36	1.57
45329499--45329560	30	2.0	31	81	9	74	22	40	0	37	1.54
45329839--45329877	19	2.2	18	90	9	62	20	35	0	43	1.52
45336077--45336213	42	3.5	41	75	20	157	22	18	27	31	1.97
45336040--45336215	75	2.4	74	95	1	307	21	19	27	31	1.97
45336116--45336316	102	2.0	102	95	2	359	19	20	28	30	1.97
45336012--45336352	177	1.9	177	93	0	583	20	19	28	30	1.97
45343590--45343820	102	2.3	102	93	0	390	19	19	29	31	1.97
45344980--45345080	40	2.9	32	76	22	112	63	0	1	34	1.06
45344980--45345032	10	4.9	11	73	13	56	58	0	1	39	1.09
45344996--45345162	40	4.2	41	87	7	240	66	0	2	31	1.04
45344994--45345162	78	2.2	76	87	7	232	65	0	2	31	1.05
45345093--45345159	18	3.6	18	77	13	73	62	0	2	34	1.10
45347148--45347197	18	2.8	17	73	8	55	42	0	4	54	1.19
45348541--45348586	22	2.1	22	100	0	92	21	23	0	54	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45350501--45350556	24	2.3	24	90	0	94	16	3	35	44	1.65
45355290--45355349	29	2.1	27	82	11	68	68	1	1	28	1.09
45374398--45374563	90	1.8	90	98	0	323	32	12	27	27	1.92
45382225--45382270	19	2.4	19	89	7	67	67	2	4	26	1.21
45382228--45382270	20	2.2	19	87	4	59	72	2	4	20	1.14
45385258--45385316	30	2.0	30	83	12	77	28	27	15	28	1.96
45385207--45385386	66	2.7	66	76	8	150	32	25	11	30	1.91
45387160--45387199	20	2.0	21	90	5	64	22	0	17	60	1.37
45397794--45397891	21	4.7	21	74	18	78	39	17	6	36	1.74
45397794--45397851	22	2.6	22	84	7	73	43	17	3	36	1.66
45397830--45397923	19	4.8	19	87	5	134	35	18	10	36	1.85
45399537--45399584	17	2.8	17	87	6	62	29	0	2	68	1.01
45409569--45409627	26	2.3	26	81	0	73	61	8	5	25	1.46
45411099--45411128	15	2.0	15	93	0	51	16	6	13	63	1.50
45411566--45412189	44	13.9	44	70	10	294	29	21	17	31	1.96
45411576--45411784	89	2.4	88	86	2	285	28	21	20	29	1.98
45411848--45412226	182	2.1	181	80	3	404	28	22	17	31	1.96
45416769--45416826	22	2.7	21	84	7	80	32	3	18	44	1.67
45416779--45416823	23	2.0	22	91	4	72	31	4	17	46	1.68
45421916--45421973	22	2.7	21	84	7	80	32	3	18	44	1.67
45421926--45421970	23	2.0	22	91	4	72	31	4	17	46	1.68
45425790--45426017	43	5.3	43	94	0	366	29	32	17	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45426216--45426275	18	3.4	18	64	13	52	40	10	6	43	1.64
45431983--45432007	13	1.9	13	100	0	50	32	8	4	56	1.47
45432491--45432535	7	6.4	7	84	0	63	33	46	0	20	1.51
45432491--45432535	21	2.1	21	92	8	74	33	46	0	20	1.51
45433243--45433485	41	5.9	41	88	0	342	29	27	22	20	1.98
45433527--45433655	40	3.3	39	84	5	161	21	21	22	34	1.97
45434370--45434412	20	2.2	20	86	0	59	44	2	0	53	1.13
45434653--45434691	18	2.2	18	86	4	53	38	10	12	38	1.78
45434819--45434862	18	2.5	18	81	3	54	40	9	13	36	1.76
45434567--45434941	171	2.2	171	93	0	626	41	15	12	30	1.84
45439094--45439289	98	2.0	98	94	0	347	37	24	9	28	1.87
45440066--45440278	44	4.8	44	67	11	130	28	23	18	29	1.98
45440022--45440366	132	2.6	132	95	0	622	29	23	18	28	1.98
45441629--45441668	12	3.3	12	92	0	71	0	0	10	90	0.47
45441630--45441668	17	2.3	16	87	12	60	0	0	10	89	0.48
45445812--45446008	98	2.0	98	97	0	376	37	24	9	27	1.87
45446820--45446861	2	21.0	2	100	0	84	50	0	0	50	1.00
45447319--45447361	7	6.4	7	84	10	63	0	30	0	69	0.88
45447319--45447361	13	3.2	14	83	9	63	0	30	0	69	0.88
45447317--45447357	20	2.0	20	100	0	82	0	29	0	70	0.87
45447298--45447358	28	2.3	26	80	8	68	0	27	0	72	0.85
45447461--45447596	19	6.7	21	80	13	81	38	16	7	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45447461--45447518	22	2.6	22	84	7	73	43	17	3	36	1.66
45447497--45447609	19	5.8	19	90	4	181	35	16	9	38	1.82
45452804--45453328	44	11.6	44	71	9	227	29	21	17	30	1.96
45452899--45453121	89	2.5	87	81	5	268	28	22	18	30	1.98
45452899--45453134	88	2.7	88	80	4	269	29	22	17	30	1.97
45453018--45453274	140	1.8	139	87	0	379	30	23	14	31	1.94
45457787--45457835	18	2.7	19	75	9	57	38	0	6	55	1.25
45461161--45461203	20	2.2	20	86	0	59	44	2	0	53	1.13
45461426--45461469	18	2.5	18	81	3	54	40	9	13	36	1.76
45461271--45461717	171	2.6	170	92	2	727	41	14	12	31	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204