genome.fa.s7.2.7.7.80.10.50.1000.176.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 ID=Chr07-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  60982465

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  176  of  204  ( 24458 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52483559--52483587	2	14.5	2	100	0	58	0	0	48	51	1.00
52488078--52488147	32	2.2	32	87	2	97	41	4	7	47	1.50
52499295--52499347	20	2.6	21	82	11	65	56	7	0	35	1.28
52499650--52499792	59	2.4	59	80	5	155	44	13	18	22	1.85
52534626--52534654	14	2.1	14	100	0	58	20	0	13	65	1.26
52535772--52535828	27	2.1	28	86	3	80	29	3	3	63	1.28
52536120--52536153	11	3.1	11	86	0	50	26	14	0	58	1.36
52536359--52536390	17	1.9	16	93	6	55	78	0	0	21	0.76
52536706--52536777	31	2.5	28	80	12	92	43	4	8	44	1.53
52537652--52538174	125	4.2	125	86	1	755	28	18	22	29	1.97
52537652--52538180	249	2.1	249	91	0	853	28	18	22	29	1.97
52540334--52540389	29	1.9	29	85	7	78	21	1	28	48	1.60
52540334--52540500	43	3.9	42	80	9	144	26	0	27	45	1.58
52540354--52540498	21	6.8	21	71	10	98	26	0	28	44	1.54
52540436--52540736	7	42.0	7	68	22	91	26	0	26	47	1.52
52540398--52540539	64	2.2	64	80	6	144	28	0	25	46	1.53
52540353--52540543	43	4.5	43	79	11	153	26	0	27	46	1.53
52540402--52540551	21	7.0	22	71	17	82	28	0	24	47	1.52
52540526--52540559	8	4.2	8	88	0	50	23	0	20	55	1.43
52540504--52540559	16	3.6	16	76	9	53	26	0	17	55	1.43
52540619--52540736	21	5.5	21	77	15	109	25	0	28	45	1.54
52540707--52540817	33	3.3	34	84	5	127	29	0	27	43	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52540799--52540862	22	2.9	23	79	6	78	18	0	23	57	1.40
52540859--52540905	22	2.0	24	88	8	71	17	0	23	59	1.37
52540828--52540898	36	1.9	37	85	2	99	18	0	25	56	1.42
52540903--52540936	15	2.3	15	95	5	61	41	0	14	44	1.45
52541005--52541088	22	3.8	21	77	19	91	17	0	26	55	1.42
52541026--52541088	15	4.2	15	71	17	51	17	0	26	55	1.42
52541027--52541172	14	10.3	14	73	10	82	20	0	28	50	1.54
52541049--52541172	7	17.7	7	67	9	65	20	0	29	48	1.56
52541027--52541089	30	2.1	30	85	2	83	19	0	26	53	1.45
52541006--52541179	21	8.1	21	71	12	88	20	0	27	51	1.51
52541246--52541294	14	3.4	14	80	5	53	24	0	26	48	1.51
52541190--52541294	22	4.9	21	70	15	72	28	0	22	47	1.58
52541239--52541319	36	2.2	37	82	10	96	27	0	25	46	1.53
52541436--52541519	22	3.8	22	82	6	98	22	0	21	55	1.43
52541417--52541512	15	6.6	14	67	11	59	22	0	21	55	1.44
52541510--52541740	33	6.5	33	69	16	117	25	0	29	43	1.58
52541564--52541614	7	7.3	7	80	8	59	15	0	33	50	1.44
52541564--52541614	14	3.6	14	84	10	68	15	0	33	50	1.44
52541564--52541614	21	2.5	20	84	9	66	15	0	33	50	1.44
52541570--52541616	21	2.2	22	88	3	69	17	0	29	53	1.44
52541582--52541676	23	4.4	22	79	11	81	25	1	30	43	1.62
52541576--52541653	7	10.7	7	74	10	50	24	1	28	46	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52541576--52541679	21	4.8	22	77	15	83	25	0	29	44	1.61
52541604--52541679	22	3.5	22	82	12	77	28	1	27	42	1.64
52541429--52541715	147	2.0	147	84	4	382	24	0	28	45	1.56
52541445--52541761	147	2.2	146	82	5	372	24	0	28	46	1.55
52541711--52541772	21	2.9	21	76	11	63	20	0	25	53	1.46
52541871--52542018	33	4.4	33	91	2	206	25	0	29	44	1.54
52541974--52542013	21	1.9	21	89	0	62	17	0	32	50	1.47
52541997--52542081	22	3.8	22	73	17	86	18	0	24	56	1.42
52542036--52542244	7	29.4	7	70	17	83	22	0	27	49	1.50
52542036--52542517	14	33.7	14	66	16	98	22	0	27	49	1.52
52541974--52542088	22	5.2	22	71	18	71	19	0	27	53	1.46
52542042--52542642	21	28.6	21	67	18	116	22	0	28	47	1.54
52542085--52542172	35	2.5	34	83	12	108	22	0	27	50	1.50
52542251--52542312	31	2.0	31	87	0	88	24	0	35	40	1.55
52542381--52542476	23	4.4	22	76	10	90	23	0	22	53	1.47
52542300--52542489	94	2.0	95	85	3	258	22	0	25	52	1.51
52542349--52542497	65	2.3	66	81	5	169	22	0	25	51	1.53
52542371--52542459	43	2.1	44	89	4	137	21	0	24	53	1.45
52542460--52542517	7	8.4	7	90	1	91	24	0	29	46	1.53
52542570--52542642	14	5.1	14	70	15	60	19	0	32	47	1.49
52542570--52542700	29	4.6	29	70	12	90	22	0	28	48	1.56
52542739--52542791	22	2.5	22	87	3	72	20	0	26	52	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52542778--52542832	7	7.9	7	82	8	67	23	0	30	45	1.53
52542864--52542942	22	3.5	22	75	13	72	18	0	25	55	1.43
52542864--52542947	44	1.9	44	82	4	107	20	0	25	54	1.44
52542938--52543000	33	1.9	33	96	0	117	25	0	30	44	1.54
52542992--52543043	7	7.3	7	77	12	52	15	0	32	51	1.43
52542992--52543043	14	3.6	14	80	14	61	15	0	32	51	1.43
52542940--52543043	33	3.3	31	80	12	79	22	0	31	46	1.52
52542992--52543036	15	3.0	16	84	9	51	13	0	33	53	1.40
52542998--52543044	22	2.1	23	88	4	69	14	0	29	55	1.40
52543004--52543108	22	4.8	22	77	14	83	24	0	29	44	1.60
52543012--52543099	45	2.0	44	80	14	101	26	1	27	45	1.61
52542857--52543144	148	2.0	147	85	2	389	24	0	29	45	1.56
52543073--52543169	33	2.9	34	83	4	117	28	0	28	42	1.56
52543140--52543201	21	2.9	21	76	11	63	20	0	25	53	1.46
52543268--52543309	15	2.9	15	82	3	50	19	0	30	50	1.48
52543300--52543422	33	3.7	32	91	4	183	28	0	29	42	1.56
52543300--52543447	66	2.2	68	86	6	203	26	0	29	44	1.54
52543426--52543531	22	4.8	22	74	16	78	19	0	25	54	1.44
52543465--52543568	7	14.7	7	73	16	63	22	0	27	50	1.50
52543478--52543673	14	13.8	14	68	17	84	23	0	28	48	1.51
52543465--52543619	21	7.6	21	69	20	71	23	0	27	49	1.50
52543579--52543673	7	13.4	7	74	9	59	25	0	27	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52543579--52543673	43	2.2	43	83	5	113	25	0	27	47	1.52
52543681--52543766	31	2.7	32	81	5	93	22	0	33	44	1.53
52543724--52543824	22	4.8	22	75	14	88	20	0	27	50	1.55
52543811--52543906	23	4.4	22	74	10	81	23	0	23	52	1.48
52543801--52543889	43	2.1	43	87	4	126	21	0	25	52	1.47
52543730--52543913	94	1.9	95	83	5	239	22	0	26	51	1.52
52543895--52543933	14	2.8	14	88	0	60	17	0	33	48	1.48
52543807--52543940	66	2.0	65	84	7	173	21	0	26	52	1.47
52543986--52544257	14	19.6	14	66	16	86	22	0	29	48	1.56
52543986--52544055	7	9.7	7	76	11	70	17	0	35	47	1.48
52544178--52544257	7	11.4	7	79	9	65	20	0	30	50	1.49
52544289--52544365	22	3.5	22	80	8	86	19	0	24	55	1.43
52544342--52544372	7	4.4	7	100	0	62	12	0	25	61	1.32
52544370--52544432	33	1.9	33	93	0	108	26	0	28	44	1.55
52544354--52544583	74	3.0	73	69	9	190	26	0	29	44	1.54
52544428--52544522	22	4.3	22	80	4	93	25	0	28	46	1.53
52544467--52544521	14	3.8	14	83	7	65	32	0	21	45	1.52
52544283--52544583	155	2.0	147	85	7	399	24	0	27	47	1.52
52544488--52544608	33	3.6	33	82	5	127	28	0	27	44	1.55
52544585--52544640	21	2.6	22	74	2	60	19	0	26	53	1.45
52544444--52544853	225	1.8	224	86	4	594	25	0	27	47	1.55
52544703--52544746	22	2.0	21	91	4	70	31	0	25	43	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52544707--52544753	15	3.2	15	81	3	51	23	0	25	51	1.49
52544744--52544832	32	2.8	32	84	1	115	26	0	30	42	1.56
52544744--52544826	33	2.5	33	86	1	114	27	0	28	43	1.55
52544813--52544852	21	1.9	21	89	0	62	17	0	32	50	1.47
52544836--52544916	22	3.6	22	76	12	85	19	0	25	54	1.45
52544875--52545096	7	31.4	7	67	16	57	22	0	26	50	1.53
52544882--52544961	21	3.8	21	80	9	65	21	0	28	50	1.49
52545044--52545089	15	3.1	15	81	6	58	19	0	26	54	1.44
52544823--52545096	14	19.1	14	65	17	57	21	0	27	50	1.52
52545088--52545149	27	2.3	27	94	0	106	19	0	37	43	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204