Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 ID=Chr07-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  60982465

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  17  of  204  ( 24458 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6428417--6428692
41
6.7
41
85
1
365
31
27
21
19
1.97
6428729--6428817
40
2.2
40
82
5
101
19
22
20
38
1.94
6428899--6428933
2
17.5
2
100
0
70
48
0
0
51
1.00
6431364--6431388
11
2.3
11
100
0
50
0
16
0
84
0.63
6438630--6438803
90
1.9
90
92
0
294
24
4
13
56
1.56
6438657--6438896
90
2.7
88
78
7
207
24
4
13
57
1.56
6441605--6441668
5
12.4
5
73
18
51
26
18
0
54
1.44
6441652--6441696
23
2.0
23
83
12
58
20
8
0
71
1.12
6442117--6442156
21
1.9
21
94
0
71
22
12
5
60
1.52
6442183--6442516
21
14.4
21
67
21
116
26
12
0
60
1.37
6442172--6442526
48
7.5
48
83
6
422
26
12
0
60
1.36
6442185--6442526
189
1.8
186
89
1
540
26
12
0
59
1.37
6442203--6442564
27
14.9
25
67
22
141
25
13
0
60
1.37
6442182--6442575
74
5.5
74
72
16
271
26
12
0
60
1.36
6443613--6443675
32
2.0
32
100
0
126
53
17
9
19
1.70
6445458--6445549
34
2.7
33
83
11
114
39
1
18
41
1.58
6445624--6446142
125
4.1
126
86
3
708
36
16
17
29
1.92
6445624--6446142
251
2.1
251
88
2
776
36
16
17
29
1.92
6448208--6448323
21
5.5
21
74
0
106
18
18
18
44
1.87
6448190--6448401
42
5.1
42
76
6
162
20
21
16
42
1.89
6448276--6448350
21
3.6
21
70
0
69
20
20
17
42
1.89
6452066--6452113
24
2.0
25
87
4
71
60
2
0
37
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6452061--6452124
25
2.5
27
75
19
73
53
1
0
45
1.10
6453581--6453633
17
3.4
17
72
20
60
15
11
18
54
1.70
6453580--6453638
30
2.0
30
93
0
100
15
11
18
54
1.71
6455238--6455275
20
1.9
20
88
0
58
47
0
5
47
1.24
6455247--6455285
20
2.0
20
84
0
51
48
0
5
46
1.24
6455362--6455403
20
2.1
21
91
8
70
47
9
9
33
1.68
6455387--6455438
14
3.7
14
89
0
77
38
13
5
42
1.68
6455473--6455504
7
4.6
7
100
0
64
59
12
0
28
1.34
6456642--6456706
30
2.2
30
97
0
121
38
3
30
27
1.72
6475730--6475799
36
1.9
36
88
0
104
31
28
12
27
1.93
6478289--6478362
37
2.0
37
100
0
148
40
5
13
40
1.67
6479244--6479296
26
2.0
27
85
7
72
69
0
0
30
0.88
6479265--6479299
18
1.9
18
94
0
61
65
0
0
34
0.93
6489164--6489197
12
2.8
12
100
0
68
44
0
0
55
0.99
6489869--6490087
46
4.8
46
92
0
348
37
7
23
31
1.82
6493536--6493803
37
7.0
37
87
8
376
27
21
14
36
1.92
6493490--6493803
157
2.0
156
93
0
538
27
21
14
35
1.93
6493573--6493839
119
2.2
120
93
0
446
28
21
13
36
1.92
6493490--6493803
156
2.0
154
90
4
436
27
21
14
35
1.93
6502888--6502936
20
2.5
20
86
0
62
30
6
6
57
1.48
6503868--6503921
8
6.4
8
79
10
54
51
0
0
48
1.00
6503867--6503997
34
3.8
35
89
9
173
56
0
2
41
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6503867--6503953
10
8.9
10
74
18
69
54
0
1
44
1.07
6503871--6503945
25
3.0
24
81
12
82
56
0
1
42
1.08
6504330--6504402
28
2.7
27
83
8
94
57
6
13
21
1.60
6507148--6507190
21
2.0
21
86
8
61
34
0
6
58
1.25
6507198--6507334
58
2.4
58
82
4
170
42
2
2
52
1.28
6507499--6507537
16
2.4
16
91
0
60
30
23
7
38
1.83
6513378--6513493
51
2.3
51
90
3
189
32
15
24
27
1.95
6531009--6531039
2
15.5
2
93
0
53
0
51
0
48
1.00
6535185--6535229
21
2.1
21
87
0
63
60
2
2
35
1.22
6535276--6535327
6
8.7
6
97
0
95
36
13
0
50
1.42
6538547--6538763
41
5.3
41
95
0
389
28
19
28
23
1.98
6558354--6559161
132
6.1
132
93
0
1346
29
23
17
29
1.97
6563786--6563841
28
2.0
27
86
6
76
58
3
3
33
1.32
6564028--6564059
3
10.7
3
100
0
64
65
0
0
34
0.93
6564058--6564082
3
8.3
3
100
0
50
36
0
32
32
1.58
6564712--6564776
20
3.3
19
71
16
53
20
16
7
55
1.65
6564707--6564787
39
2.1
39
92
0
135
20
19
6
53
1.67
6565122--6565161
20
2.0
20
85
9
55
57
0
2
40
1.12
6568130--6568154
2
12.5
2
100
0
50
48
0
0
52
1.00
6572773--6572820
19
2.5
19
81
15
55
43
6
0
50
1.27
6574762--6574880
52
2.2
52
89
2
175
26
23
14
36
1.93
6583777--6583818
22
1.9
22
90
0
66
2
9
23
64
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6595242--6595270
5
6.0
5
92
8
51
0
17
0
82
0.66
6612299--6612348
3
16.7
3
95
0
91
36
0
32
32
1.58
6619719--6619771
26
2.0
26
85
7
72
24
18
20
35
1.95
6622423--6622453
16
1.9
16
93
0
53
25
0
16
58
1.38
6623131--6623205
24
3.2
24
61
21
59
30
6
32
30
1.83
6623130--6623323
46
4.2
46
96
0
352
33
8
28
28
1.87
6622816--6623824
501
2.0
501
97
0
1910
34
10
24
29
1.89
6623632--6623706
24
3.2
24
61
21
59
30
6
32
30
1.83
6623631--6623907
46
6.0
46
95
0
482
33
9
28
28
1.87
6626843--6626902
31
1.9
32
86
10
88
35
25
16
23
1.95
6627285--6627331
21
2.2
21
88
0
67
2
44
17
36
1.60
6634735--6634795
26
2.4
26
76
10
63
31
1
19
47
1.59
6635890--6635914
2
12.5
2
100
0
50
52
0
0
48
1.00
6636070--6636122
24
2.2
24
89
0
79
49
5
1
43
1.37
6637679--6637838
72
2.2
73
87
3
225
26
19
17
36
1.94
6637946--6638012
34
1.9
35
96
3
127
40
2
8
47
1.50
6638334--6638401
7
9.6
7
82
3
64
45
32
1
20
1.60
6638426--6638590
41
4.1
40
77
8
131
20
23
16
40
1.91
6638456--6638590
41
3.3
41
79
7
134
17
23
17
40
1.91
6639154--6639196
22
2.0
22
81
9
52
55
9
13
20
1.66
6644844--6644878
18
1.9
18
88
0
52
54
2
2
40
1.30
6648245--6648272
6
4.7
6
100
0
56
17
67
0
14
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6649278--6649324
7
6.9
7
76
13
53
23
0
4
72
1.02
6649775--6649830
27
2.1
27
83
6
71
66
1
0
32
1.03
6660725--6660765
17
2.3
18
83
4
57
39
21
0
39
1.54
6684858--6684910
27
2.0
27
82
10
65
56
0
9
33
1.32
6684987--6685020
14
2.4
14
90
0
50
35
2
2
58
1.28
6685803--6685853
7
7.3
7
100
0
102
68
0
0
31
0.90
6692884--6692917
16
2.1
17
88
5
52
79
8
2
8
1.03
6693909--6693950
22
1.9
22
90
0
66
28
11
26
33
1.92
6714622--6714674
24
2.2
24
96
0
97
35
22
26
15
1.93
6723595--6723631
2
19.0
2
94
5
67
48
0
0
51
1.00
6734474--6734843
109
3.5
102
78
11
318
25
20
21
32
1.97
6734546--6734842
104
2.8
106
82
6
361
27
19
20
32
1.97
6735544--6735784
90
2.7
90
88
2
367
26
7
14
51
1.68
6740347--6740407
21
3.0
20
83
9
86
34
11
0
54
1.37
6740373--6740546
79
2.2
79
78
11
178
30
12
3
53
1.55
6740538--6740577
21
1.9
21
94
0
71
30
5
0
65
1.14
6740540--6740585
21
2.2
21
84
7
58
30
6
0
63
1.20
6740784--6740828
17
2.7
16
86
6
54
20
17
0
62
1.33
6740764--6740849
28
3.0
26
74
12
64
20
13
1
63
1.36
6740834--6740880
21
2.2
22
85
11
62
25
10
0
63
1.26
6740824--6740913
27
3.6
25
69
24
73
25
12
0
62
1.30
6740834--6740880
22
2.2
21
85
11
60
25
10
0
63
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6740829--6740924
48
2.0
49
87
8
142
22
12
1
63
1.35
6740834--6740911
21
3.4
21
70
21
59
25
12
0
61
1.31
6740854--6740906
27
2.0
27
85
10
74
22
15
0
62
1.32
6740957--6741195
44
5.5
44
89
2
356
36
2
10
50
1.49
6740957--6741192
87
2.7
87
90
2
357
36
2
10
50
1.50
6741028--6741173
22
6.7
22
65
12
86
36
2
10
49
1.53
6740957--6741195
131
1.8
132
88
4
367
36
2
10
50
1.49
6748163--6748248
41
2.1
40
84
2
109
31
26
9
32
1.88
6753314--6753363
19
2.5
19
83
9
64
58
12
0
30
1.34
6753314--6753371
20
2.8
21
82
10
75
58
13
0
27
1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204