genome.fa.s17.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Length:  56598092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  102  of  185  ( 22116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32242573--32242780	69	3.0	69	98	0	398	23	30	18	27	1.98
32242692--32242730	19	2.1	19	95	0	69	28	30	12	28	1.93
32244591--32244627	19	1.9	19	100	0	74	32	32	5	29	1.80
32245169--32245229	30	2.0	32	90	6	99	31	1	45	21	1.61
32245175--32245237	30	2.1	30	85	8	83	33	1	44	20	1.61
32248024--32248063	9	4.4	9	93	0	71	42	22	10	25	1.84
32254776--32254947	79	2.2	79	84	3	220	25	21	27	25	1.99
32254723--32254945	40	5.6	39	81	8	209	25	21	27	25	1.99
32254803--32254980	79	2.2	80	80	3	191	25	21	28	24	1.99
32262049--32262181	35	3.8	34	83	3	122	13	16	30	39	1.87
32269897--32269951	26	2.1	26	100	0	110	43	7	10	38	1.68
32273197--32273234	18	2.1	18	100	0	76	28	15	10	44	1.80
32274228--32274253	13	2.0	13	100	0	52	15	15	30	38	1.88
32281270--32281323	27	2.0	28	85	10	76	42	5	7	44	1.55
32291437--32291479	22	1.9	23	90	4	70	65	6	0	27	1.18
32306430--32306495	27	2.3	28	87	12	91	68	0	1	30	0.99
32306398--32306456	11	5.1	11	77	16	57	69	0	1	28	0.98
32306399--32306506	52	2.0	54	82	12	134	67	0	1	30	1.01
32313390--32313474	43	2.0	44	90	2	136	25	24	27	22	2.00
32317811--32317943	50	2.6	51	83	4	155	24	19	25	30	1.98
32323806--32324003	51	4.0	48	74	7	171	24	18	27	30	1.98
32323812--32323996	101	1.8	102	85	3	266	24	18	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32323812--32323940	50	2.6	50	81	3	152	22	20	27	29	1.98
32330161--32330248	42	2.1	42	89	0	131	26	20	30	22	1.98
32330182--32330266	42	2.0	41	82	8	100	27	21	29	22	1.99
32336432--32336463	8	4.1	8	92	8	57	62	0	12	25	1.30
32336432--32336462	15	2.1	15	100	0	62	61	0	12	25	1.32
32336410--32336546	26	5.4	26	77	11	151	48	6	18	25	1.72
32336410--32336546	51	2.7	50	83	8	147	48	6	18	25	1.72
32346318--32346380	29	2.2	29	91	0	99	26	20	11	41	1.86
32354525--32354567	17	2.5	17	100	0	86	23	41	25	9	1.84
32368260--32368304	23	2.0	23	90	0	72	57	4	6	31	1.44
32368353--32368604	24	10.8	24	72	16	181	55	4	4	34	1.42
32368375--32368609	69	3.4	69	79	9	214	56	4	5	34	1.42
32368353--32368603	45	5.4	48	70	17	129	55	4	4	34	1.42
32368442--32368609	70	2.4	69	80	5	187	57	4	5	32	1.42
32369439--32369483	22	2.0	22	86	4	63	33	17	6	42	1.76
32369462--32369517	19	2.9	19	97	0	103	30	19	10	39	1.86
32369833--32369959	51	2.5	50	82	5	130	25	22	18	33	1.97
32369947--32369989	21	2.0	21	90	0	68	23	37	4	34	1.76
32369875--32370097	123	1.8	123	81	0	275	27	26	16	30	1.96
32370302--32370471	46	3.7	46	91	0	268	28	28	18	24	1.98
32371297--32371321	12	2.1	12	100	0	50	36	8	32	24	1.84
32372827--32372864	16	2.3	17	90	4	60	2	18	0	78	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32372824--32372888	6	11.7	6	74	21	52	10	20	0	69	1.18
32372824--32372893	21	3.3	20	82	11	70	11	18	0	70	1.17
32375002--32375049	19	2.5	19	80	6	53	45	6	16	31	1.72
32375481--32375515	16	2.2	16	89	0	52	42	22	17	17	1.88
32376989--32377042	23	2.3	23	80	3	63	55	3	7	33	1.45
32377082--32377333	24	10.8	24	70	16	154	56	4	4	34	1.40
32377104--32377331	69	3.3	69	77	7	189	56	4	4	34	1.40
32377181--32377331	47	3.3	44	76	12	126	58	2	4	33	1.32
32378192--32378244	18	2.8	19	91	5	90	32	16	11	39	1.85
32388168--32388720	272	2.0	272	98	0	1063	43	6	17	32	1.76
32389954--32389987	16	2.1	16	100	0	68	14	5	26	52	1.64
32390499--32390541	20	2.2	19	83	4	50	13	23	27	34	1.93
32391379--32391412	16	2.1	16	94	0	59	17	5	23	52	1.66
32402214--32402404	41	4.6	41	92	1	303	28	20	28	22	1.98
32410632--32410688	28	2.0	28	86	6	80	29	21	17	31	1.96
32411135--32411229	38	2.6	36	79	9	104	24	23	18	33	1.97
32413322--32413447	35	3.6	35	80	8	123	40	31	12	15	1.84
32414023--32414084	31	2.0	31	100	0	124	41	19	6	32	1.77
32415420--32415454	18	1.9	18	88	0	52	45	17	11	25	1.81
32416996--32417035	19	2.1	19	85	0	53	25	7	0	67	1.16
32417301--32417344	16	2.6	17	82	13	56	63	0	2	34	1.07
32418589--32418666	34	2.3	34	88	0	111	32	5	16	46	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32425651--32425823	50	3.3	51	85	6	215	22	30	21	25	1.99
32427526--32427608	34	2.5	34	86	2	105	39	4	15	39	1.69
32429021--32429106	43	2.0	43	97	0	163	33	19	4	41	1.72
32429122--32429203	41	2.0	41	100	0	164	26	12	7	53	1.64
32430334--32430387	18	3.1	18	73	13	58	48	0	9	42	1.35
32431311--32431390	40	2.0	40	100	0	160	40	17	10	32	1.83
32431560--32431586	14	1.9	14	100	0	54	18	22	51	7	1.70
32438992--32439030	14	2.6	15	88	8	53	56	2	0	41	1.13
32442849--32442878	3	10.3	3	92	7	53	66	0	33	0	0.92
32442829--32442882	14	3.9	13	85	7	63	62	1	35	0	1.06
32442849--32442882	17	2.1	17	94	5	61	67	0	32	0	0.91
32442954--32442979	12	2.2	12	100	0	52	38	0	15	46	1.46
32443027--32443291	101	2.7	101	82	6	321	30	1	12	54	1.47
32443150--32443228	41	2.0	41	94	2	142	30	2	15	51	1.56
32443184--32443313	57	2.5	53	81	9	151	33	1	11	53	1.47
32443184--32443312	27	4.9	27	69	23	103	33	1	11	53	1.47
32443044--32443291	19	12.5	19	71	18	159	31	1	12	54	1.46
32446538--32446617	27	3.0	27	77	3	81	26	32	22	18	1.97
32447898--32447945	21	2.2	22	81	3	62	47	2	2	47	1.25
32457853--32457926	13	5.7	13	74	6	69	40	24	8	27	1.83
32459742--32459839	27	3.5	28	88	5	128	32	28	13	25	1.93
32468028--32468097	27	2.5	28	93	2	115	32	27	12	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32472233--32472411	63	2.8	63	82	3	216	24	25	20	29	1.99
32472915--32472954	21	1.9	21	89	0	62	75	5	20	0	0.99
32472938--32472963	3	8.7	3	100	0	52	69	0	30	0	0.89
32475021--32475078	30	1.9	30	82	0	71	25	24	25	24	2.00
32475102--32475161	30	2.0	30	83	3	77	43	18	11	26	1.84
32476367--32476407	9	4.6	9	82	11	57	46	2	9	41	1.50
32477207--32477264	28	2.1	28	96	0	107	44	0	15	39	1.47
32482307--32482348	18	2.3	18	83	0	57	71	0	26	2	0.98
32490140--32490197	29	2.0	29	93	0	98	20	24	17	37	1.93
32499691--32499730	15	2.7	15	100	0	80	25	7	20	47	1.75
32506050--32506074	13	1.9	13	100	0	50	88	4	8	0	0.64
32507198--32507399	79	2.7	77	88	10	278	25	21	27	25	1.99
32507184--32507399	40	5.7	39	85	9	254	26	21	27	25	1.99
32507148--32507399	40	6.6	39	82	12	212	26	21	27	24	1.99
32507198--32507432	79	3.1	79	83	10	235	26	20	27	24	1.99
32515079--32515382	40	7.7	40	90	4	422	25	21	27	25	1.99
32527014--32527316	40	7.6	40	90	2	396	24	20	28	27	1.99
32534977--32535279	40	7.6	40	90	2	396	24	20	28	27	1.99
32541981--32542042	21	2.7	23	72	25	58	27	19	8	45	1.78
32542135--32542174	14	2.9	14	100	0	80	62	22	0	15	1.32
32545732--32545771	20	2.1	19	86	13	55	10	35	5	50	1.58
32546916--32546958	18	2.4	18	88	0	59	25	9	25	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32547095--32547292	63	3.1	63	81	2	175	25	20	20	32	1.97
32549299--32549482	60	3.1	59	82	2	208	26	17	23	31	1.97
32558391--32558465	30	2.5	30	89	2	107	37	9	17	36	1.82
32566125--32566257	18	7.6	18	71	20	77	65	1	19	13	1.34
32566149--32566213	12	5.2	12	71	23	53	66	1	20	12	1.32
32568170--32568200	16	1.9	16	100	0	62	12	6	25	54	1.62
32571807--32571868	21	2.7	23	72	25	58	29	19	8	43	1.79
32573973--32574018	18	2.6	18	79	10	58	8	17	4	69	1.31
32573906--32574014	57	1.9	55	84	14	143	11	21	2	65	1.37
32574802--32574861	21	2.6	23	70	24	54	30	21	8	40	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185